mRNA_L-elsbetiae_contig1567.3964.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1567.3964.1
Unique NamemRNA_L-elsbetiae_contig1567.3964.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A6H5LDQ8_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDQ8_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 2.070e-118
Identity = 223/285 (78.25%), Postives = 233/285 (81.75%), Query Frame = 1 
Query:   28 KPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXAG-----------------AADGNDRASGDGAQARKPAPAGKXXXXXVGDSHQRIRRRFKQSSPVADVGXXXXXXMDSTVLRSVFGGRGGDGGRK--NTKDG 825
            KPLS RK+KDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVV+RVYLVEEDQANRRARKK GGNSGKRY EGWVEFEDKKIARA AESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXX                    A G +   G+      PAPAG      VGDSH+RIRRRFKQS+PV DVG XXXXXMD+ VLRS+FGG  G   R+  N +DG
Sbjct:   86 KPLSHRKLKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKGGGNSGKRYAEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGGGEGVPGN------PAPAG------VGDSHRRIRRRFKQSNPVGDVGGXXXXXMDAKVLRSLFGGDDGGVRRRTGNNEDG 358
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A2D4BVT2_PYTIN (Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVT2_PYTIN)

HSP 1 Score: 224 bits (570), Expect = 8.190e-67
Identity = 107/166 (64.46%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:   34 LSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            LS +K+++Y E  AKRGVVY+SRVPPFMKP K+KHL+ Q+G ++RVYLV ED+A ++ R  AGGN   +YTEGW+EFEDKK+A+++A  LN   IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KMEER
Sbjct:   30 LSTKKLEEYRERAAKRGVVYISRVPPFMKPEKLKHLLGQYGAINRVYLVPEDKAQQKRRVAAGGNRKTKYTEGWIEFEDKKVAKSVAAMLNTKQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIREQKLRMEIAQAKKENDAYLERVEQSKQFQKMEER 195
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A5D6Y296_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y296_9STRA)

HSP 1 Score: 218 bits (556), Expect = 7.480e-65
Identity = 122/256 (47.66%), Postives = 152/256 (59.38%), Query Frame = 1 
Query:   13 LKRPLKPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXAGAADGNDRASGDGAQARKPAPAGKXXXXXVGDSHQRIRRRFKQSSPVADVGXXXXXXMDSTVLRSVF 780
            LKR    LS+ K++ + +   KRGVVYLSRVPPFMKP KVKHL+ Q G ++R+YLV ED+ N + R  AGGN  + YTEGW+EFEDKK+AR +A  LN   IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLRLE  QAK+EN  Y++ VE  + F KMEER               +GA D                           + HQ+IRR F Q +P +             +L  VF
Sbjct:   15 LKRSRADLSREKLEAFKKRADKRGVVYLSRVPPFMKPEKVKHLLGQFGDINRIYLVPEDKTNHKKRVAAGGNRKQSYTEGWIEFEDKKVARQVAAVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRLEIAQAKKENEAYLDKVEQSKQFEKMEERKHG------------SGARD---------------------------EQHQQIRRSFTQKAPTSSKQQSSLGANGDQLLAKVF 231
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: K3WDP5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP5_GLOUD)

HSP 1 Score: 217 bits (553), Expect = 4.040e-64
Identity = 122/256 (47.66%), Postives = 159/256 (62.11%), Query Frame = 1 
Query:   16 KRPLKPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXAGAADG-NDRASGDGAQARKPAPAGKXXXXXVGDSHQRIRRRFKQSSPVADVGXXXXXXMDSTVLRSVF 780
            KR    LS+ K++ + +   KRGVVY+SRVPPFMKP KVKHL+ Q+G ++R+YLV ED+ + + R  AGGN  + YTEGW+EFEDKK+A+ +A+ LN   IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KMEER               +GA  G NDR +                       +Q+IRR F+Q +P +          D T+L  VF
Sbjct:   30 KRSKLDLSREKMEQFKKKAEKRGVVYISRVPPFMKPEKVKHLLGQYGDINRIYLVPEDKTHHKKRVAAGGNRKQSYTEGWIEFEDKKVAKQVAKVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLEKVEQSKKFEKMEERK--------------SGANGGANDRDA----------------------QYQQIRRTFQQKAPTSSKQHSSLGSSD-TLLEKVF 248
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: H3HB09_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB09_PHYRM)

HSP 1 Score: 214 bits (544), Expect = 5.500e-63
Identity = 100/171 (58.48%), Postives = 136/171 (79.53%), Query Frame = 1 
Query:   19 RPLKPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            +PL  LS+ K++ + E   +RGVVY++RVPPFMKP K++HL+ ++G ++R+YLV ED++  + R  AGGN  ++YTEGW+EFEDKK+A+ +A+ LN TLIGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V+  + F KM+ R
Sbjct:   16 KPLAGLSREKMEQFKEMAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKSLHKKRVSAGGNRRQKYTEGWLEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMDAR 186
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A8K1FEZ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEZ1_PYTOL)

HSP 1 Score: 214 bits (544), Expect = 5.860e-63
Identity = 101/166 (60.84%), Postives = 132/166 (79.52%), Query Frame = 1 
Query:   34 LSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            LS+ K+ +Y E +AKRGVVY+SRVPP+MKP K+KHL+ ++G ++R+YLV ED+  ++ R  AGGN   +YTEGWVEFE+KK+A+ +A  LN   IGGRKR+YYHDD+WNLKYL+ FKW+HLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KMEER
Sbjct:   30 LSKAKLDEYRERVAKRGVVYISRVPPYMKPEKLKHLLSKYGDINRIYLVPEDKVQQKKRVAAGGNRKTKYTEGWVEFENKKVAKTVATMLNTKQIGGRKRDYYHDDIWNLKYLKGFKWEHLTEKIAYENRIRDQKLRMEIAQAKKENDAYLERVEQSKQFTKMEER 195
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A0P1B2U2_PLAHL (Pre-rrna-processing protein esf2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2U2_PLAHL)

HSP 1 Score: 212 bits (540), Expect = 1.740e-62
Identity = 101/171 (59.06%), Postives = 132/171 (77.19%), Query Frame = 1 
Query:   19 RPLKPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            +PL  LS+ K+  + E   +RGVVY++RVPPFMKP K++HL+ ++G ++R+YLV ED+   + R  AGGN   +YTEGW+EFEDKK+A+ +A+ LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  +   KMEER
Sbjct:   11 KPLAGLSREKMMQFKEKTERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRMKYTEGWIEFEDKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEVYLERVEQSKQLEKMEER 181
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A3R7J166_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J166_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.220e-62
Identity = 99/171 (57.89%), Postives = 132/171 (77.19%), Query Frame = 1 
Query:   19 RPLKPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            +PL+ LS+ K++ + +   KRGVVY++RVPPFMKP K++HL+ ++G ++R+YLV ED+   + R  AGGN    YTEGW+EFEDKKIA+ +A+ LN T IGGRKR+YYHDDMWN KYL+ FKWDHLTEK+AYE R+R QKLR+E  Q+K+EN  Y+E V+  + F KME R
Sbjct:   15 KPLEGLSREKMEQFKQKAEKRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRTNYTEGWIEFEDKKIAKRVAKMLNTTQIGGRKRDYYHDDMWNFKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQSKKENEAYLERVDQSKQFEKMEAR 185
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: D0MVG4_PHYIT (Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVG4_PHYIT)

HSP 1 Score: 210 bits (535), Expect = 1.120e-61
Identity = 99/169 (58.58%), Postives = 133/169 (78.70%), Query Frame = 1 
Query:   25 LKPLSQRKVKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            L  LS+ K++ + E   +RGVVY++RVPPFMKP K++HL+ ++G ++R+YLV ED+A  + R  +GGN  ++YTEGW+EFE+KK+A+ +A+ LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E VE  + F KME R
Sbjct:   18 LADLSREKMEQFKEKAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFENKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEAR 186
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Match: A0A7S1TZ85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ85_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.770e-60
Identity = 94/159 (59.12%), Postives = 130/159 (81.76%), Query Frame = 1 
Query:   55 DYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 531
            +YN  +A+RGV+YLSR+PPFMKP KV+HL+  HG V+RV+L  ED++NR+AR+++GG+  KRY EGWVEF +KK+A+ +A SLNNT IGG +R+YYH+D+WN+KYL+ FKWDHLTEK+AYERRVR  ++R E +QA+RENA  ++L + G++   ME R
Sbjct:   44 EYNAKMARRGVLYLSRIPPFMKPQKVRHLLAVHGEVTRVFLAAEDRSNRKARRRSGGSKAKRYDEGWVEFAEKKVAKRVALSLNNTKIGGSRRSYYHEDIWNIKYLKGFKWDHLTEKLAYERRVREHRMRAEMLQARRENAMLLDLADQGKALRAMEGR 202
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1567.3964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDQ8_9PHAE2.070e-11878.25RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2D4BVT2_PYTIN8.190e-6764.46Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium i... [more]
A0A5D6Y296_9STRA7.480e-6547.66RRM domain-containing protein n=1 Tax=Pythium bras... [more]
K3WDP5_GLOUD4.040e-6447.66RRM domain-containing protein n=1 Tax=Globisporang... [more]
H3HB09_PHYRM5.500e-6358.48RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8K1FEZ1_PYTOL5.860e-6360.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1B2U2_PLAHL1.740e-6259.06Pre-rrna-processing protein esf2 n=1 Tax=Plasmopar... [more]
A0A3R7J166_9STRA7.220e-6257.89RRM domain-containing protein n=2 Tax=Phytophthora... [more]
D0MVG4_PHYIT1.120e-6158.58Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophth... [more]
A0A7S1TZ85_9STRA1.770e-6059.12Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1567contigL-elsbetiae_contig1567:1348..5154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue4.3e-47
Seed eggNOG ortholog2880.D7FRK9
Preferred nameABT1
KEGG koko:K14785
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001671,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030182,GO:0030234,GO:0030490,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0032991,GO:0034462,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048513,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051704,GO:0051707,GO:0060255,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097659,GO:0098542,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.small-subunit processome assembly
EggNOG OGsKOG3152@1,KOG3152@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_002630.1
Exons4
Model size1436
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1567.3964.1prot_L-elsbetiae_contig1567.3964.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1567 1462..4546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.4332232-UTR-L-elsbetiae_contig1567:1347..14611622815642.4332232-UTR-L-elsbetiae_contig1567:1347..1461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1567 1348..1461 +
1691683009.3997731-UTR-L-elsbetiae_contig1567:1347..14611691683009.3997731-UTR-L-elsbetiae_contig1567:1347..1461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1567 1348..1461 +
1622815642.5150368-UTR-L-elsbetiae_contig1567:4546..51541622815642.5150368-UTR-L-elsbetiae_contig1567:4546..5154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1567 4547..5154 +
1691683009.4570003-UTR-L-elsbetiae_contig1567:4546..51541691683009.4570003-UTR-L-elsbetiae_contig1567:4546..5154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1567 4547..5154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.447507-CDS-L-elsbetiae_contig1567:1461..15151622815642.447507-CDS-L-elsbetiae_contig1567:1461..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 1462..1515 +
1691683009.4132404-CDS-L-elsbetiae_contig1567:1461..15151691683009.4132404-CDS-L-elsbetiae_contig1567:1461..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 1462..1515 +
1622815642.4643807-CDS-L-elsbetiae_contig1567:2945..30631622815642.4643807-CDS-L-elsbetiae_contig1567:2945..3063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 2946..3063 +
1691683009.422666-CDS-L-elsbetiae_contig1567:2945..30631691683009.422666-CDS-L-elsbetiae_contig1567:2945..3063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 2946..3063 +
1622815642.482728-CDS-L-elsbetiae_contig1567:3459..36401622815642.482728-CDS-L-elsbetiae_contig1567:3459..3640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 3460..3640 +
1691683009.4347334-CDS-L-elsbetiae_contig1567:3459..36401691683009.4347334-CDS-L-elsbetiae_contig1567:3459..3640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 3460..3640 +
1622815642.4998534-CDS-L-elsbetiae_contig1567:4185..45461622815642.4998534-CDS-L-elsbetiae_contig1567:4185..4546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 4186..4546 +
1691683009.445521-CDS-L-elsbetiae_contig1567:4185..45461691683009.445521-CDS-L-elsbetiae_contig1567:4185..4546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 4186..4546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1567.3964.1

>prot_L-elsbetiae_contig1567.3964.1 ID=prot_L-elsbetiae_contig1567.3964.1|Name=mRNA_L-elsbetiae_contig1567.3964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MKPAKVKHLMEQHGVVSRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEF
EDKKIARAIAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAY
ERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERKRKRREDNPPP
AAPPAGAADGNDRASGDGAQARKPAPAGKGAGGGVGDSHQRIRRRFKQSS
PVADVGGGGGGGMDSTVLRSVFGGRGGDGGRKNTKDG*
back to top

mRNA from alignment at L-elsbetiae_contig1567:1348..5154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1567.3964.1 ID=mRNA_L-elsbetiae_contig1567.3964.1|Name=mRNA_L-elsbetiae_contig1567.3964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3807bp|location=Sequence derived from alignment at L-elsbetiae_contig1567:1348..5154+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCAGAAAAAGCTCAAGCGCCCTCTCAAGCCACTCAGCCAGCGCAAGGT
AAAGGACTACAACGAGGGGTTGGCCAAGCGTGGAGTGGTGTACCTGAGCC
GCGTTCCACCCTTCATGAAGCCCGCTAAAGTTAAGCATCTTATGGAGCAG
CATGGCGTGGTATCACGGGTGAGTGAACCGCAGAAAGCTGGGAGGGTGTA
GGTATACGGCGGAGGTATCTAGATATACGTACATCCCAACACATCACAGA
TTTCGCCTGATGTACTCCTGACTGCGTTGTAGTTCCTGTGTACGCTTTTG
TGGGGCGATGGGGCAGGTTCGGACGCTGTAATCCACCCCTGTTTGCGTTG
TTCACCTGTGATCTGGAATTATTTGTTCTCTCGAAAAGCGTATTACAATA
GTCTATTTAGTCCAACTTTCTTTGTCCATGGGCACCATCCGCGGTTGATC
GACTTTGGCTGTTGTCACAGCAGTGTGAAAGTACCGTAGACGACACAAGA
TACTACGGGTACCGATGATACCACCCCTCCACAGAAAACCACCCCGGTGA
TAATAATTTTAATCGCAAAACAAAAGTAATAGGCCCATTTTTCACCAGGG
TACCGAAGATAACATCCCCCCCCTGAGGTTACACCGCATAAACCACGGCG
GGGCATGCTGTTTAGTTTTATCCTCGGCGAGTACCGGTAGGTAGGCAGGG
GTAATCTTTGTGGGGTCCTGTCGGCGACTGCAAGTAGCTTGCTGCGTGAA
AACGGCTTGTTGTTTTGATTATGCTTTTTGCATTCGCTCGAAAGCGCGCC
GGTATTTATAAGAGATTTGCAATACCGGAATCCAGCGGGGAACGTAGACG
GGTTTCAGCCTTTTCATGCCTGTCTAGAATTTAGAATCATATCTTCTTGG
TGCCACACCAGGTGTTGGTGGACTTTTTTTTTTAACGAGAGGCTGGTGGT
GTACCGTACATACATGCCCAGATGTCATGCGAAGCATGCATGAACCGTGA
TCGAGACACCCCCCCTTGTTACTAGCCCACTTATTCCCCAAGTATATACC
TCCTGCAGAACTGCGGCAATTTGCTCGGCAGACATTAATACCTACCCCCT
CTTGATGCCAGACCCCCTGCAGATGCAGGGCGGCAGTCATCGCCGGCAGT
GATATAACACGCCGCCGCGATCATCCTCCCTTGTTATCACTCCCCTTGGG
GACGGTACATCAGCAGTCATCGTAGGCAGTGATACACCACCCCTCCCTTA
TGTCATCACCCCCCGCCCTTGTGCTCACCCCCCTTTCGATGGGCTTTCCC
ACCACCTGCACTTTATCACCGGGGGACAATAGATACCACCTCCCCAATAG
AGAAAACCACGCCCGATGATAATATTTTCAAGCGCCCAAATGTATCACCG
GGGGGGAGGGGTGGTTTCTTGTGTCGTCTACGGTACAACAGCACCGGCCC
GATTATAAGAAACTGAAATTCCGGCCCAGGCTCGGTTTCTTTTTGTGCTG
GAGTCACCAACCATAGTTTCTCAAACGCGTCTTTCTGATATTTTTCGCCA
AAATTGCCCGCTTTTCTTGAATGCGTATCGCTTTTCGGAACGAGCCAGGT
GTACCTTGTGGAGGAGGACCAAGCCAATCGCCGTGCCAGAAAAAAGGCCG
GCGGAAACTCTGGCAAGCGATACACCGAAGGCTGGGTGGAATTCGAGGAC
AAAAAGATCGCACGAGGTCGGTAAACACGAGAAGCAAAACACTATCCCGT
ACAATAGACGAAAGTGAGCGCCCAGCAGCACCCACAGAGAGAGGCGCATT
CCTGCTGAGTACTGAGTAGACGGCGTGTGACGGCGAGCGCGGGGTTAGTC
TTGCAGAACGCTTCTCACATTCCCACACACATGGTAGACTCGATGTCTTG
ATCGTTCTTTGAGGGCTCACACGACACACGGGGCCGCGTCATCTAGGTTG
GATTGCTGGCCTCGGGAAGTCGCAGCTCGCGCTGCGCCACGTGCTCGTGC
TGATGTAGTGCGTTCTAGGTGGGGGTCACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGTGCATTCCCCCCACACCACCCCCCACCACCCAACCTGCCTTC
CTCCACCTGCAGCCATCGCCGAGAGCCTGAACAACACGCTCATCGGCGGG
AGAAAGAGGAACTACTACCACGACGACATGTGGAACCTCAAGTACCTGCG
CAAGTTTAAGTGGGACCACCTCACAGAAAAGGTTGCCTACGAGCGAAGAG
TGCGTTCCCAGAAGCTCCGCCTGGAGACGATGCAGGCGAAGAGGTGACTA
TGCTACATACACAACAGCAGAGAGAGGGGCCCTGGGTGTACATAAGCGTT
GGCTTGTTGTTTTCGGTGCGCTAGGGGGGGGGGCGCCCTATAGCGCGGTG
GGGTGGCTACTACTGGCTGTGCTTGCGCTACATGGGCTTGTCCTGCTTCG
GGTAAAAAGTGGCTTCCCTGGTTTCTGATACGAATGCAGCGTCGGTGCTG
GGTGGTCACAGTGCTGCCTGACTTAAAAAAAATATTCCTGCGAGCGATTT
CTTACTTGTGTATGTATGTTCGGGTTGTTTTTTTCAACGTGCGGAGCACG
CACAGCGTCGGCTTTTTTCCTTTCGTGATCTAAGGCCCAACGACGACGGT
TTCCAGATTTATTTTTTTGCTGCCTGCTGTAGTGTTCGTGCGCGCACAGC
TCAACTGCCTTCTTCCCCACGGTGATGTGCTGGCTGCCAACCACGTTTAA
CTTGTCGCTTCGAATCCTTCCCAACGATACTACTGCCCCTGCTGCTGCTG
CTGCTGCTGCTGGACCAACTTTACTTTGTGTCTTACAGAGAGAATGCGCG
GTACGTTGAACTGGTGGAGAGCGGACGCTCATTCGCCAAGATGGAAGAGC
GCAAGAGGAAGCGAAGAGAGGACAACCCGCCCCCCGCTGCTCCTCCGGCC
GGCGCCGCGGACGGAAATGACCGGGCCTCGGGGGACGGGGCACAAGCAAG
AAAACCCGCACCGGCAGGAAAAGGAGCAGGGGGAGGAGTTGGAGACTCGC
ACCAACGCATCCGGCGACGATTCAAACAATCAAGCCCAGTTGCCGACGTT
GGCGGGGGTGGCGGCGGGGGGATGGATTCGACGGTCTTGCGCTCCGTGTT
CGGGGGGCGGGGCGGTGACGGCGGTAGGAAGAATACGAAGGATGGATAGT
TTTTGTGTCGTGCGGTTCTTGTGAATAGGAAGCTGCAAGGCTCGTCTCCA
GTCGTACAGCTTCTTCTTCTGTTCTGCTTTGCCTTTTTGCGTGTCTTTCA
ACTTGGTGCGTATGTGTGTCTGGTTGCTTGGCCGGAATTTTGATGCTTTT
TTTATCACGCCTTTCGGGTGTTTTGCGTGGTTCCTGCCCTCCTGTACACT
ATAGAGCATCCCACGGGCAGCTTTTTACTTCGATGTTAAGATTGACCGAG
TTTTGTCAGAGCGATGAAAGTTCGACGTGAACTACTGTGTACACCCTCAA
TAGGGCTGTAAAACGTGGCTTTTGGGCAGACGCGGTGGGCATTTGGTGGA
GCTGCAGCGTAGACGGCACCTTGATACAGATGCCTGCAGCGACGTGTGTC
CGGGGCGCCACTTGAATGACAGCATATTTTTCCGTTGACTAGGCAGCCAT
TCGTCGCTTGAGCGCGCTTTTTGGGTGGACTCGACAAAGTATGGTCAATG
TGTCCTCGGTTTGTTGGACTTTCTTTATGAAAACCGGCATCGTCCTCTAT
TCTTCCAAGGAACAGGCTAACAACTTAAAGATCCGGGCTGATGGCAATCT
AGACTCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1567:1348..5154+

>mRNA_L-elsbetiae_contig1567.3964.1 ID=mRNA_L-elsbetiae_contig1567.3964.1|Name=mRNA_L-elsbetiae_contig1567.3964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig1567:1348..5154+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCCCGCTAAAGTTAAGCATCTTATGGAGCAGCATGGCGTGGTATC
ACGGATGAAGCCCGCTAAAGTTAAGCATCTTATGGAGCAGCATGGCGTGG
TATCACGGGTGTACCTTGTGGAGGAGGACCAAGCCAATCGCCGTGCCAGA
AAAAAGGCCGGCGGAAACTCTGGCAAGCGATACACCGAAGGCTGGGTGGA
ATTCGAGGACAAAAAGATCGCACGAGGTGTACCTTGTGGAGGAGGACCAA
GCCAATCGCCGTGCCAGAAAAAAGGCCGGCGGAAACTCTGGCAAGCGATA
CACCGAAGGCTGGGTGGAATTCGAGGACAAAAAGATCGCACGAGCCATCG
CCGAGAGCCTGAACAACACGCTCATCGGCGGGAGAAAGAGGAACTACTAC
CACGACGACATGTGGAACCTCAAGTACCTGCGCAAGTTTAAGTGGGACCA
CCTCACAGAAAAGGTTGCCTACGAGCGAAGAGTGCGTTCCCAGAAGCTCC
GCCTGGAGACGATGCAGGCGAAGAGCCATCGCCGAGAGCCTGAACAACAC
GCTCATCGGCGGGAGAAAGAGGAACTACTACCACGACGACATGTGGAACC
TCAAGTACCTGCGCAAGTTTAAGTGGGACCACCTCACAGAAAAGGTTGCC
TACGAGCGAAGAGTGCGTTCCCAGAAGCTCCGCCTGGAGACGATGCAGGC
GAAGAGAGAGAATGCGCGGTACGTTGAACTGGTGGAGAGCGGACGCTCAT
TCGCCAAGATGGAAGAGCGCAAGAGGAAGCGAAGAGAGGACAACCCGCCC
CCCGCTGCTCCTCCGGCCGGCGCCGCGGACGGAAATGACCGGGCCTCGGG
GGACGGGGCACAAGCAAGAAAACCCGCACCGGCAGGAAAAGGAGCAGGGG
GAGGAGTTGGAGACTCGCACCAACGCATCCGGCGACGATTCAAACAATCA
AGCCCAGTTGCCGACGTTGGCGGGGGTGGCGGCGGGGGGATGGATTCGAC
GGTCTTGCGCTCCGTGTTCGGGGGGCGGGGCGGTGACGGCGGTAGGAAGA
ATACGAAGGATGGATAGAGAGAATGCGCGGTACGTTGAACTGGTGGAGAG
CGGACGCTCATTCGCCAAGATGGAAGAGCGCAAGAGGAAGCGAAGAGAGG
ACAACCCGCCCCCCGCTGCTCCTCCGGCCGGCGCCGCGGACGGAAATGAC
CGGGCCTCGGGGGACGGGGCACAAGCAAGAAAACCCGCACCGGCAGGAAA
AGGAGCAGGGGGAGGAGTTGGAGACTCGCACCAACGCATCCGGCGACGAT
TCAAACAATCAAGCCCAGTTGCCGACGTTGGCGGGGGTGGCGGCGGGGGG
ATGGATTCGACGGTCTTGCGCTCCGTGTTCGGGGGGCGGGGCGGTGACGG
CGGTAGGAAGAATACGAAGGATGGATAG
back to top