mRNA_L-elsbetiae_contig15658.3959.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15658.3959.1
Unique NamemRNA_L-elsbetiae_contig15658.3959.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15658.3959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15658contigL-elsbetiae_contig15658:875..1561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.9378521-CDS-L-elsbetiae_contig15658:874..10001622815641.9378521-CDS-L-elsbetiae_contig15658:874..1000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15658 875..1000 +
1691683009.1329029-CDS-L-elsbetiae_contig15658:874..10001691683009.1329029-CDS-L-elsbetiae_contig15658:874..1000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15658 875..1000 +
1622815641.9515092-CDS-L-elsbetiae_contig15658:1375..15611622815641.9515092-CDS-L-elsbetiae_contig15658:1375..1561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15658 1376..1561 +
1691683009.1419535-CDS-L-elsbetiae_contig15658:1375..15611691683009.1419535-CDS-L-elsbetiae_contig15658:1375..1561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15658 1376..1561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15658.3959.1prot_L-elsbetiae_contig15658.3959.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15658 875..1561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15658.3959.1

>prot_L-elsbetiae_contig15658.3959.1 ID=prot_L-elsbetiae_contig15658.3959.1|Name=mRNA_L-elsbetiae_contig15658.3959.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
ASIPSTLEKKRALEKTVPALLQATDLKQSIKATKAMAKERKKDATAWNEA
IEQLLRVGQPGQQTATVGRAHRNVHVSALRNLVELAQYEGYSGRGISSAM
EILD
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mRNA from alignment at L-elsbetiae_contig15658:875..1561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15658.3959.1 ID=mRNA_L-elsbetiae_contig15658.3959.1|Name=mRNA_L-elsbetiae_contig15658.3959.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=687bp|location=Sequence derived from alignment at L-elsbetiae_contig15658:875..1561+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGCATCCCGTCGACGCTGGAGAAGAAGAGAGCCCTTGAGAAGACCGT
GCCTGCGCTGCTCCAAGCGACGGATCTGAAACAATCCATCAAGGCCACCA
AAGCCATGGCAAAAGAGAGGAAGAAGGTGCGCGGATGTAAAATTGGTCTG
TTCCAGGTCAGCGATGACTTTTGAACCTAACCGTGTAAGCGATCCGGTCT
ACGGCCGTTGCAGGACGTATGCATGTCCACTGATACGCCTGTCATGCCCC
ATGGGTGTGCTTAACGCCGATTGGTTAGTGGCGTACACCTGCCGTTTTGT
GCTCACATTCCCCCCCCCCCCTTTAACATTGTTTTCTAAATGTAGCTGGC
TAAGCCAGACGATGTTCGTCCGTTGCAATCGGGGCTTCAAAGAAATATGT
TTGTTGATGGTGTGCGTGGGGACAGTGGCATTTCAAAGCCAAAGCTCCCC
TTGCCTCCCACACCGCCCGTCCGGTCCGACTTTGGACACCATCGTTTTCA
GGATGCCACAGCTTGGAACGAGGCAATCGAGCAGCTTCTTCGTGTAGGCC
AGCCTGGACAGCAAACTGCAACAGTGGGGCGAGCACACCGGAACGTGCAC
GTTTCTGCTCTTCGAAACCTCGTGGAGCTTGCTCAGTACGAAGGATACAG
CGGAAGGGGTATCAGCAGCGCCATGGAGATATTGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15658:875..1561+

>mRNA_L-elsbetiae_contig15658.3959.1 ID=mRNA_L-elsbetiae_contig15658.3959.1|Name=mRNA_L-elsbetiae_contig15658.3959.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig15658:875..1561+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGCATCCCGTCGACGCTGGAGAAGAAGAGAGCCCTTGAGAAGACCGT
GCCTGCGCTGCTCCAAGCGACGGATCTGAAACAATCCATCAAGGCCACCA
AAGCCATGGCAAAAGAGAGGAAGAAGGCAAGCATCCCGTCGACGCTGGAG
AAGAAGAGAGCCCTTGAGAAGACCGTGCCTGCGCTGCTCCAAGCGACGGA
TCTGAAACAATCCATCAAGGCCACCAAAGCCATGGCAAAAGAGAGGAAGA
AGGATGCCACAGCTTGGAACGAGGCAATCGAGCAGCTTCTTCGTGTAGGC
CAGCCTGGACAGCAAACTGCAACAGTGGGGCGAGCACACCGGAACGTGCA
CGTTTCTGCTCTTCGAAACCTCGTGGAGCTTGCTCAGTACGAAGGATACA
GCGGAAGGGGTATCAGCAGCGCCATGGAGATATTGGATGATGCCACAGCT
TGGAACGAGGCAATCGAGCAGCTTCTTCGTGTAGGCCAGCCTGGACAGCA
AACTGCAACAGTGGGGCGAGCACACCGGAACGTGCACGTTTCTGCTCTTC
GAAACCTCGTGGAGCTTGCTCAGTACGAAGGATACAGCGGAAGGGGTATC
AGCAGCGCCATGGAGATATTGGAT
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