mRNA_L-elsbetiae_contig15655.3958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15655.3958.1
Unique NamemRNA_L-elsbetiae_contig15655.3958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15655.3958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15655contigL-elsbetiae_contig15655:2..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15655.3958.1prot_L-elsbetiae_contig15655.3958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15655 59..394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.8679943-UTR-L-elsbetiae_contig15655:1..581622815641.8679943-UTR-L-elsbetiae_contig15655:1..58Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15655 2..58 +
1691683009.1018176-UTR-L-elsbetiae_contig15655:1..581691683009.1018176-UTR-L-elsbetiae_contig15655:1..58Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15655 2..58 +
1622815641.8894665-UTR-L-elsbetiae_contig15655:394..5141622815641.8894665-UTR-L-elsbetiae_contig15655:394..514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15655 395..514 +
1691683009.1246912-UTR-L-elsbetiae_contig15655:394..5141691683009.1246912-UTR-L-elsbetiae_contig15655:394..514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15655 395..514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.878748-CDS-L-elsbetiae_contig15655:58..3941622815641.878748-CDS-L-elsbetiae_contig15655:58..394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15655 59..394 +
1691683009.113113-CDS-L-elsbetiae_contig15655:58..3941691683009.113113-CDS-L-elsbetiae_contig15655:58..394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15655 59..394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15655.3958.1

>prot_L-elsbetiae_contig15655.3958.1 ID=prot_L-elsbetiae_contig15655.3958.1|Name=mRNA_L-elsbetiae_contig15655.3958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MGHARKGSKYKPCLNLPMACEICTGEKYVWKYNMAAHIKSVHSEVDGGGS
PRFLFPKQSARKSWASLVSNQHHHRGVREEPRATPGHRGRFASDSRMLMP
AAAAAAAAAAP*
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mRNA from alignment at L-elsbetiae_contig15655:2..514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15655.3958.1 ID=mRNA_L-elsbetiae_contig15655.3958.1|Name=mRNA_L-elsbetiae_contig15655.3958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=513bp|location=Sequence derived from alignment at L-elsbetiae_contig15655:2..514+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGGCGCACGAGTGCCCGCCTCGAGGGATGGGTGGTATCGTTGGTCCG
GCTCTCAATGGGCCACGCACGGAAGGGGTCAAAGTACAAACCATGCCTCA
ATCTGCCGATGGCGTGCGAAATATGCACGGGCGAAAAATACGTCTGGAAG
TACAACATGGCTGCCCACATCAAGTCAGTGCACAGCGAGGTCGATGGTGG
CGGCAGTCCCCGATTTCTATTTCCGAAGCAGAGCGCAAGGAAGTCTTGGG
CCTCATTGGTGTCAAACCAACATCATCATCGGGGAGTAAGAGAGGAACCA
CGCGCGACACCAGGACACAGAGGGAGGTTCGCCAGCGACAGTCGGATGTT
GATGCCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCATAGCAACAGG
AACGACGGGCGAAACTCGGGTTTAGGAAGTTTGCACTTCCCAAGTCATCA
CATGTCGTGGTGTTGTTTTTCGTGTTGTTGTTCACAGCAAGACAATACTG
TAGCAGCCTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15655:2..514+

>mRNA_L-elsbetiae_contig15655.3958.1 ID=mRNA_L-elsbetiae_contig15655.3958.1|Name=mRNA_L-elsbetiae_contig15655.3958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig15655:2..514+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCACGCACGGAAGGGGTCAAAGTACAAACCATGCCTCAATCTGCC
GATGGCGTGCGAAATATGCACGGGCGAAAAATACGTCTGGAAGTACAACA
TGGCTGCCCACATCAAGTCAGTGCACAGCGAGGTCGATGGTGGCGGCAGT
CCCCGATTTCTATTTCCGAAGCAGAGCGCAAGGAAGTCTTGGGCCTCATT
GGTGTCAAACCAACATCATCATCGGGGAGTAAGAGAGGAACCACGCGCGA
CACCAGGACACAGAGGGAGGTTCGCCAGCGACAGTCGGATGTTGATGCCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCATAGATGGGCCACGCACG
GAAGGGGTCAAAGTACAAACCATGCCTCAATCTGCCGATGGCGTGCGAAA
TATGCACGGGCGAAAAATACGTCTGGAAGTACAACATGGCTGCCCACATC
AAGTCAGTGCACAGCGAGGTCGATGGTGGCGGCAGTCCCCGATTTCTATT
TCCGAAGCAGAGCGCAAGGAAGTCTTGGGCCTCATTGGTGTCAAACCAAC
ATCATCATCGGGGAGTAAGAGAGGAACCACGCGCGACACCAGGACACAGA
GGGAGGTTCGCCAGCGACAGTCGGATGTTGATGCCGGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCACCATAG
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