mRNA_L-elsbetiae_contig15650.3957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15650.3957.1
Unique NamemRNA_L-elsbetiae_contig15650.3957.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: A0A6H5L3G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.980e-21
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   25 VKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKVR 168
            VKQEFYKYPKP YNFNYVDQLISGD+EELW+ TKYRRLLFNIVPPK R
Sbjct: 1702 VKQEFYKYPKPPYNFNYVDQLISGDEEELWEVTKYRRLLFNIVPPKAR 1749
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: D7FUT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.030e-20
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   25 VKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKV 165
            VKQEFYKYPKP YNFNYVDQLISGD+E+LW+ TKYRRLLFNIVPPKV
Sbjct: 1633 VKQEFYKYPKPAYNFNYVDQLISGDEEQLWEVTKYRRLLFNIVPPKV 1679
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: A0A835YMX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.170e-10
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   13 RYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKV 165
            R+  VKQ FYKYP PEY++NY+D+L+ G   +L + TKYRR+LF I+PP V
Sbjct:   49 RFQTVKQMFYKYPSPEYSWNYLDELVCGYNSDLIENTKYRRILFAIIPPPV 99
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: K3W9W3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9W3_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 2.950e-8
Identity = 25/50 (50.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   16 YIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKV 165
            ++ V QEF KYP+ EY++NY+DQLI G  +E+ + T+Y+R+L+ IVPP++
Sbjct: 1101 FLSVSQEFRKYPRLEYSWNYLDQLICGYYDEMSEGTRYKRILYCIVPPRL 1150
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: F0X162_9STRA (Vacuolar membraneassociated protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X162_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.920e-7
Identity = 26/78 (33.33%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   13 RYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKVRGICCFPGTSPLPKVCEYVSQLAGRTA 246
            +++   QEF KY + EY++NY+DQLI G  +E+ +  KY+R+ + IVPP          +    K  +Y+   AG ++
Sbjct: 1245 KFLAATQEFRKYSRSEYSWNYLDQLICGYYDEMSEVIKYKRITYCIVPPSFEAESILEYSERFSKFQDYLKSRAGNSS 1322
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: A0A024GBS9_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GBS9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.190e-7
Identity = 26/78 (33.33%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   13 RYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKVRGICCFPGTSPLPKVCEYVSQLAGRTA 246
            +++   QEF KY + EY++NY+DQLI G  +E+ +  KY+R+ + I+PP          T    K  +Y+   AG ++
Sbjct: 1240 KFLAATQEFRKYSRSEYSWNYLDQLICGYYDEMSEVIKYKRITYCILPPPFGAESILEYTERFSKFHDYLKSRAGNSS 1317
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: K3X4M7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4M7_GLOUD)

HSP 1 Score: 53.9 bits (128), Expect = 1.670e-6
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   25 VKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKVRGICCFPGTSPLPKVCEYVSQ 228
            ++Q F++YP+PE N+N +D L+ G Q+++ DFTK RR+ F I+PP         G + L  V +YV +
Sbjct:  310 LQQTFHEYPQPEENWNLLDHLLCGYQDDMSDFTKCRRIRFAIMPPVEIASSSHQGAASL-SVSKYVEK 376
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: H3GUZ7_PHYRM (FYVE-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUZ7_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 2.350e-6
Identity = 23/53 (43.40%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 RYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKVRG 171
            R++ V QEF KYP+ EY +N++DQLI G  +++ +  +Y+R LF ++PP++ G
Sbjct: 1058 RFVNVAQEFRKYPQIEYQWNHLDQLICGYIDDMSEGIRYKRSLFCLLPPRLGG 1110
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: A0A3M6VGD7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGD7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.990e-6
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 IKKRYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKVRG 171
            I  R+  V QEF KYPK EY +N++DQLI G  +E+ +  +Y+R L+ + PP++ G
Sbjct: 1065 IVNRFATVGQEFRKYPKIEYQWNHLDQLICGYIDEMSEGIRYKRSLYCLFPPQLTG 1120
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BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Match: A0A0P1ALV4_PLAHL (Vacuolar membrane-associated n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALV4_PLAHL)

HSP 1 Score: 51.6 bits (122), Expect = 1.120e-5
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   13 RYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNIVPPKV 165
            R++ V QEF KYPK EY +N++DQLI G  +E+ +  +Y+R L  I PP++
Sbjct: 1043 RFVAVAQEFRKYPKIEYQWNHLDQLICGYIDEMSEGIRYKRTLHCIFPPRL 1093
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15650.3957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L3G7_9PHAE2.980e-2189.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUT6_ECTSI1.030e-2089.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMX3_9STRA1.170e-1056.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3W9W3_GLOUD2.950e-850.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0X162_9STRA4.920e-733.33Vacuolar membraneassociated protein putative n=1 T... [more]
A0A024GBS9_9STRA9.190e-733.33Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
K3X4M7_GLOUD1.670e-639.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GUZ7_PHYRM2.350e-643.40FYVE-type domain-containing protein n=2 Tax=Phytop... [more]
A0A3M6VGD7_9STRA5.990e-644.64Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1ALV4_PLAHL1.120e-547.06Vacuolar membrane-associated n=1 Tax=Plasmopara ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15650contigL-elsbetiae_contig15650:392..637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D7FUT6
Preferred nameIML1
KEGG koko:K20404
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006950,GO:0006995,GO:0007154,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010648,GO:0016020,GO:0016241,GO:0019222,GO:0019898,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071496,GO:0097042,GO:0098588,GO:0098772,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.negative regulation of TOR signaling
EggNOG OGsKOG3572@1,KOG3572@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.8252742-CDS-L-elsbetiae_contig15650:391..6371622815641.8252742-CDS-L-elsbetiae_contig15650:391..637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15650 392..637 +
1691683009.0902371-CDS-L-elsbetiae_contig15650:391..6371691683009.0902371-CDS-L-elsbetiae_contig15650:391..637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15650 392..637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15650.3957.1prot_L-elsbetiae_contig15650.3957.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15650 392..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15650.3957.1

>prot_L-elsbetiae_contig15650.3957.1 ID=prot_L-elsbetiae_contig15650.3957.1|Name=mRNA_L-elsbetiae_contig15650.3957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MIKKRYIQVKQEFYKYPKPEYNFNYVDQLISGDQEELWDFTKYRRLLFNI
VPPKVRGICCFPGTSPLPKVCEYVSQLAGRTA
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mRNA from alignment at L-elsbetiae_contig15650:392..637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15650.3957.1 ID=mRNA_L-elsbetiae_contig15650.3957.1|Name=mRNA_L-elsbetiae_contig15650.3957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig15650:392..637+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAAAAAACGCTACATACAGGTCAAGCAGGAGTTCTACAAGTACCC
GAAGCCCGAGTACAACTTCAACTACGTCGACCAGCTCATCTCCGGAGATC
AGGAGGAGCTGTGGGACTTCACCAAGTACAGACGTCTCCTGTTCAACATC
GTCCCACCCAAGGTGAGAGGCATTTGTTGCTTCCCGGGAACTTCGCCTCT
TCCCAAGGTTTGCGAGTACGTTTCTCAGCTGGCGGGGCGGACAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15650:392..637+

>mRNA_L-elsbetiae_contig15650.3957.1 ID=mRNA_L-elsbetiae_contig15650.3957.1|Name=mRNA_L-elsbetiae_contig15650.3957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig15650:392..637+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAAAAAACGCTACATACAGGTCAAGCAGGAGTTCTACAAGTACCC
GAAGCCCGAGTACAACTTCAACTACGTCGACCAGCTCATCTCCGGAGATC
AGGAGGAGCTGTGGGACTTCACCAAGTACAGACGTCTCCTGTTCAACATC
GTCCCACCCAAGGTGAGAGGCATTTGTTGCTTCCCGGGAACTTCGCCTCT
TCCCAAGGTTTGCGAGTACGTTTCTCAGCTGGCGGGGCGGACAGCTATGA
TAAAAAAACGCTACATACAGGTCAAGCAGGAGTTCTACAAGTACCCGAAG
CCCGAGTACAACTTCAACTACGTCGACCAGCTCATCTCCGGAGATCAGGA
GGAGCTGTGGGACTTCACCAAGTACAGACGTCTCCTGTTCAACATCGTCC
CACCCAAGGTGAGAGGCATTTGTTGCTTCCCGGGAACTTCGCCTCTTCCC
AAGGTTTGCGAGTACGTTTCTCAGCTGGCGGGGCGGACAGCT
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