mRNA_L-elsbetiae_contig15643.3955.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15643.3955.1
Unique NamemRNA_L-elsbetiae_contig15643.3955.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15643.3955.1 vs. uniprot
Match: D8LDB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB3_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 1.360e-84
Identity = 131/196 (66.84%), Postives = 157/196 (80.10%), Query Frame = 2 
Query:    2 GISNVNVPRIDRNGSSLQFSVSWADGGGDGGFEDTAPLVDIWLAGQQSDPPAWVELVVQLNVANERLAHLEVDMDWAMSGWDVTRDGKLQSCVYDSQDYGNFACSDFVPFVSSD---AEVDAANNDDSHRGEGGEGGTVAALVIAGALVVGLVGWMAAVSARRRQRRRWLGTANEAEALPEEDCIHPAEGTYSGLH 580
            GISNV+VPR+++NGS L FSV+W DGGG GGFEDTAP VDIWL  +QSDPPAWVELVV+ NV N+ L+H EV MDW+M GWD+TRDG+LQSCVYD+QDY N+ACSDFV F + +   A+VDA N      G+GGEGGTV ALV+AG LV+GLV W+A  S+RRRQRRRWLGTANEAEALPE+  +  ++  YSG H
Sbjct:  166 GISNVDVPRVEQNGSYLSFSVTWGDGGGAGGFEDTAPFVDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAAMEETAADVDATNG----GGDGGEGGTVLALVLAGGLVLGLVAWLAITSSRRRQRRRWLGTANEAEALPEDTFVRLSD-PYSGFH 356
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BLAST of mRNA_L-elsbetiae_contig15643.3955.1 vs. uniprot
Match: A0A6H5KP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP04_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.000e-45
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 2 
Query:  200 LAHLEVDMDWAMSGWDVTRDGKLQSCVYDSQDYGNFACSDFVPFVSSD---AEVDAANNDDSHRGEGGEGGTVAALVIAGALVVGLVGWMAAVSARRRQRRRWLGTANEAEALPEEDCIHPAEGTYSGLH 580
            L+H EV MDW+M GWD+TRDG+LQSCVYD+QDY N+ACSDFV F +++   A+ DA N+     G+GGEGGTV ALV+ G L  GLV W+A  S+RR+QRRRWLGTANEAEALPE+  I    G YSG H
Sbjct:    2 LSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAATEETAADGDATNS----GGDGGEGGTVLALVLVGGLFSGLVAWLAITSSRRKQRRRWLGTANEAEALPEDTFIR-LSGPYSGFH 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15643.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDB3_ECTSI1.360e-8466.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP04_9PHAE3.000e-4562.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15643contigL-elsbetiae_contig15643:1891..3670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001870.1
Exons3
Model size925
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15643.3955.1prot_L-elsbetiae_contig15643.3955.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15643 2233..2980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6876984-UTR-L-elsbetiae_contig15643:1890..22321622815641.6876984-UTR-L-elsbetiae_contig15643:1890..2232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15643 1891..2232 -
1691683009.017579-UTR-L-elsbetiae_contig15643:1890..22321691683009.017579-UTR-L-elsbetiae_contig15643:1890..2232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15643 1891..2232 -
1622815641.7227175-UTR-L-elsbetiae_contig15643:2980..30191622815641.7227175-UTR-L-elsbetiae_contig15643:2980..3019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15643 2981..3019 -
1691683009.0482132-UTR-L-elsbetiae_contig15643:2980..30191691683009.0482132-UTR-L-elsbetiae_contig15643:2980..3019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15643 2981..3019 -
1622815641.732515-UTR-L-elsbetiae_contig15643:3489..36701622815641.732515-UTR-L-elsbetiae_contig15643:3489..3670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15643 3490..3670 -
1691683009.0617967-UTR-L-elsbetiae_contig15643:3489..36701691683009.0617967-UTR-L-elsbetiae_contig15643:3489..3670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15643 3490..3670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.7016344-CDS-L-elsbetiae_contig15643:2232..24651622815641.7016344-CDS-L-elsbetiae_contig15643:2232..2465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15643 2233..2465 -
1691683009.0285625-CDS-L-elsbetiae_contig15643:2232..24651691683009.0285625-CDS-L-elsbetiae_contig15643:2232..2465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15643 2233..2465 -
1622815641.7123806-CDS-L-elsbetiae_contig15643:2850..29801622815641.7123806-CDS-L-elsbetiae_contig15643:2850..2980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15643 2851..2980 -
1691683009.038378-CDS-L-elsbetiae_contig15643:2850..29801691683009.038378-CDS-L-elsbetiae_contig15643:2850..2980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15643 2851..2980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15643.3955.1

>prot_L-elsbetiae_contig15643.3955.1 ID=prot_L-elsbetiae_contig15643.3955.1|Name=mRNA_L-elsbetiae_contig15643.3955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MDWAMSGWDVTRDGKLQSCVYDSQDYGNFACSDFVPFVSSDAEVDAANND
DSHRGEGGEGGTVAALVIAGALVVGLVGWMAAVSARRRQRRRWLGTANEA
EALPEEDCIHPAEGTYSGLH*
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mRNA from alignment at L-elsbetiae_contig15643:1891..3670-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15643.3955.1 ID=mRNA_L-elsbetiae_contig15643.3955.1|Name=mRNA_L-elsbetiae_contig15643.3955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1780bp|location=Sequence derived from alignment at L-elsbetiae_contig15643:1891..3670- (Laminarionema elsbetiae ELsaHSoW15)
CGGCATCAGCAACGTCAACGTTCCGCGCATCGACCGGAACGGGTCGTCTC
TCCAGTTTTCGGTTTCGTGGGCGGACGGCGGGGGGGACGGGGGATTCGAG
GACACCGCCCCCCTCGTGGACATCTGGTTGGCCGGTCAGCAGTCTGATCC
GCCGGCATGGGTCGAGCTTGTCGTCCAGCTGGTACGAAAATCACGTTGTA
TTCTGAATGCTCGCGATTCGGACTACTATATAAGTATAGGTGCTTTCCAT
ACATAGCCGTGTATGTAGTAGATTTTACCTACGAATAGTGTTGACACCAC
CATGAAATGACACCTTCCTAGGTAGCGGCAGCTCGAGAAGAAAACAACAC
CCGCAGCAAGTGGCGAGGTATTGGTGTCGCTACAGACTTCCTCGGAGTGC
GCCAGTCGTCTGCCTTTCCATCGATACAGTAGAGTGTGCCCCCGTGCATC
TGATGCCCTGTGCATCTGATGCGAAGATTTTTTTGTCGAAACTCAACCGA
GAGTACAGCAGTATCTCGCGGCAAGGACAAAACGACACGCGATCCCACTC
TACTCGCCTGCGCCAGCATGGTAATGATTTCCAGGCCTGCCTGCAGCAAC
CCACCGAGGAAAATGCCATGCTAAGTACGTACCCTGTTACCAACAACGCA
GAACGTAGCAAACGAACGATTGGCGCACTTGGAGGTCGACATGGATTGGG
CGATGTCGGGCTGGGATGTGACCCGCGACGGGAAGCTCCAGTCATGCGTG
TACGACTCCCAAGACTACGGAAACTTTGCCTGCAGCGACTTTGTGCCGTT
CGTTTCGAGCGACGCCGAAGGTACTTGTTGTGCTGAAACTGCTGCATGTC
CTAGCTGAAACAGCTACCCAAATAAATGTTCTCTAGACGATTAATTCGGT
ACTGCTGTTGATTGGGAGAGAGAGATAGAGAGAAGGAATCACCATTGGGG
GACAGAAGACAATAGAGTCGAAGCTAAAGAACGCAGCGCTCTCGTTAACG
TGTTCAAACTACTGCTGCTCATGTGGGTGCCGCTCCCGTGCTCCCGAAAC
AACTCACGACGAAAGCGAAACACATCGGCGACGGCAGCTCAGCGCCGCAG
CCGCGCAGCCGGTGCGACATTATTTCCTAATAAGCACCATCCTCTCCATC
TCGCCAATGATGGAGTTGTTTCAACCCGTCCTCCCATCCTGCCGCGTGCA
CCCAGTTGACGCAGCCAACAACGACGATAGCCATCGCGGCGAGGGAGGAG
AGGGGGGTACTGTCGCCGCTTTGGTGATTGCCGGTGCCCTCGTCGTCGGC
CTTGTAGGCTGGATGGCTGCCGTATCGGCCCGCCGGAGGCAGAGGAGGAG
GTGGCTCGGCACCGCCAACGAGGCCGAAGCGCTGCCGGAAGAAGACTGCA
TCCATCCGGCGGAGGGGACGTACTCGGGATTGCACTGAACTGAAACCAAG
CCGTTTGGGGGATTTTTTTCGAGTCATTTTGGGGAGTTTTGGTTTTGAGG
GTTTTATCCCCCCCCACTCCACCTCTTTTTCCCGTCACGGTGTTTAGCGG
GTGCCGGCATAACCACGTCGAAATGTCGACTATTTATAGTCTAAACGCCG
GGGCTATATTCATATTTTTTGCCTGTTGCCCGGACGAGATTCTTTCGTTT
GTCAAGAGTTTATTTTCCTACGTGCTGTTTTACACACGTTTTGTTATTGT
TGGAGCAAGGTCTTTGGCTGGAGGGCCGAAGCCAGAGTATCTTAGTCCTG
GCATTTTGCCGCTTTTTTGCCTTCACCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15643:1891..3670-

>mRNA_L-elsbetiae_contig15643.3955.1 ID=mRNA_L-elsbetiae_contig15643.3955.1|Name=mRNA_L-elsbetiae_contig15643.3955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig15643:1891..3670- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTGGGCGATGTCGGGCTGGGATGTGACCCGCGACGGGAAGCTCCA
GTCATGCGTGTACGACTCCCAAGACTACGGAAACTTTGCCTGCAGCGACT
TTGTGCCGTTCGTTTCGAGCGACGCCGAAGATGGATTGGGCGATGTCGGG
CTGGGATGTGACCCGCGACGGGAAGCTCCAGTCATGCGTGTACGACTCCC
AAGACTACGGAAACTTTGCCTGCAGCGACTTTGTGCCGTTCGTTTCGAGC
GACGCCGAAGTTGACGCAGCCAACAACGACGATAGCCATCGCGGCGAGGG
AGGAGAGGGGGGTACTGTCGCCGCTTTGGTGATTGCCGGTGCCCTCGTCG
TCGGCCTTGTAGGCTGGATGGCTGCCGTATCGGCCCGCCGGAGGCAGAGG
AGGAGGTGGCTCGGCACCGCCAACGAGGCCGAAGCGCTGCCGGAAGAAGA
CTGCATCCATCCGGCGGAGGGGACGTACTCGGGATTGCACTGATTGACGC
AGCCAACAACGACGATAGCCATCGCGGCGAGGGAGGAGAGGGGGGTACTG
TCGCCGCTTTGGTGATTGCCGGTGCCCTCGTCGTCGGCCTTGTAGGCTGG
ATGGCTGCCGTATCGGCCCGCCGGAGGCAGAGGAGGAGGTGGCTCGGCAC
CGCCAACGAGGCCGAAGCGCTGCCGGAAGAAGACTGCATCCATCCGGCGG
AGGGGACGTACTCGGGATTGCACTGA
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