mRNA_L-elsbetiae_contig15642.3954.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15642.3954.1
Unique NamemRNA_L-elsbetiae_contig15642.3954.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15642.3954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15642contigL-elsbetiae_contig15642:905..1636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size732
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15642.3954.1prot_L-elsbetiae_contig15642.3954.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15642 1011..1550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6225522-UTR-L-elsbetiae_contig15642:904..10101622815641.6225522-UTR-L-elsbetiae_contig15642:904..1010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15642 905..1010 +
1691683008.9853764-UTR-L-elsbetiae_contig15642:904..10101691683008.9853764-UTR-L-elsbetiae_contig15642:904..1010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15642 905..1010 +
1622815641.6499383-UTR-L-elsbetiae_contig15642:1550..16361622815641.6499383-UTR-L-elsbetiae_contig15642:1550..1636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15642 1551..1636 +
1691683009.0072072-UTR-L-elsbetiae_contig15642:1550..16361691683009.0072072-UTR-L-elsbetiae_contig15642:1550..1636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15642 1551..1636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6359842-CDS-L-elsbetiae_contig15642:1010..15501622815641.6359842-CDS-L-elsbetiae_contig15642:1010..1550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15642 1011..1550 +
1691683008.9976387-CDS-L-elsbetiae_contig15642:1010..15501691683008.9976387-CDS-L-elsbetiae_contig15642:1010..1550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15642 1011..1550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15642.3954.1

>prot_L-elsbetiae_contig15642.3954.1 ID=prot_L-elsbetiae_contig15642.3954.1|Name=mRNA_L-elsbetiae_contig15642.3954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MGPRRPLGHPAARRGSVTVGVNVASLTGARRPTPLRRPLPKSRRRRGSVG
VRGQRLLPKSRRSRGSVGTSGGRRYQSLTRSSWTTRSSATVLRQQCVCFR
IPRKRSPPAKPKTTRPTKRTTPGPVGRATPPLGVAPGTTPTLTTPALGVA
TLCPLACRVPDAVMCLVPLSVHRSSLGSA*
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mRNA from alignment at L-elsbetiae_contig15642:905..1636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15642.3954.1 ID=mRNA_L-elsbetiae_contig15642.3954.1|Name=mRNA_L-elsbetiae_contig15642.3954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig15642:905..1636+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTGGAAGCCTGACTCGCAGCCCGGTAGTAACCACTGGGCCGGATCGCG
CCGAAACCCTACTCCTACGGGGACCCCTGGCCAAATGCGCTTCACTGTGA
CCGTGCATGGGGCCCCGTCGCCCGTTGGGACACCCAGCGGCACGAAGAGG
AAGCGTAACAGTAGGCGTAAACGTAGCCAGTCTAACGGGCGCAAGGCGAC
CAACGCCACTCCGGCGGCCTCTCCCCAAATCTCGGAGACGCCGAGGATCC
GTGGGCGTAAGAGGGCAGCGGCTTCTCCCCAAATCTCGGAGAAGCCGAGG
ATCCGTGGGCACCTCAGGCGGACGCAGGTACCAGTCGCTCACCAGGAGCT
CCTGGACCACCAGGTCCTCAGCGACAGTATTGCGGCAGCAGTGCGTATGC
TTCAGAATACCAAGAAAGCGATCGCCGCCCGCCAAACCAAAGACGACGAG
ACCGACGAAGAGAACGACCCCGGGACCCGTAGGTCGGGCGACCCCTCCTC
TTGGGGTAGCACCGGGGACGACACCGACTCTGACGACTCCCGCTTTGGGG
GTGGCCACTTTGTGCCCATTGGCGTGTAGAGTACCCGACGCCGTGATGTG
TTTGGTTCCTCTCTCGGTGCATCGTTCTTCTCTAGGCTCGGCCTAGCTTT
GAGGTTTCTGCCGAGTCGATTTTATATTTTTTTGAATGGGGTGTACGTCC
GGGCGTCACATTTGCCTCATGCTTTCCGTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15642:905..1636+

>mRNA_L-elsbetiae_contig15642.3954.1 ID=mRNA_L-elsbetiae_contig15642.3954.1|Name=mRNA_L-elsbetiae_contig15642.3954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig15642:905..1636+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCCCCGTCGCCCGTTGGGACACCCAGCGGCACGAAGAGGAAGCGT
AACAGTAGGCGTAAACGTAGCCAGTCTAACGGGCGCAAGGCGACCAACGC
CACTCCGGCGGCCTCTCCCCAAATCTCGGAGACGCCGAGGATCCGTGGGC
GTAAGAGGGCAGCGGCTTCTCCCCAAATCTCGGAGAAGCCGAGGATCCGT
GGGCACCTCAGGCGGACGCAGGTACCAGTCGCTCACCAGGAGCTCCTGGA
CCACCAGGTCCTCAGCGACAGTATTGCGGCAGCAGTGCGTATGCTTCAGA
ATACCAAGAAAGCGATCGCCGCCCGCCAAACCAAAGACGACGAGACCGAC
GAAGAGAACGACCCCGGGACCCGTAGGTCGGGCGACCCCTCCTCTTGGGG
TAGCACCGGGGACGACACCGACTCTGACGACTCCCGCTTTGGGGGTGGCC
ACTTTGTGCCCATTGGCGTGTAGAGTACCCGACGCCGTGATGTGTTTGGT
TCCTCTCTCGGTGCATCGTTCTTCTCTAGGCTCGGCCTAGATGGGGCCCC
GTCGCCCGTTGGGACACCCAGCGGCACGAAGAGGAAGCGTAACAGTAGGC
GTAAACGTAGCCAGTCTAACGGGCGCAAGGCGACCAACGCCACTCCGGCG
GCCTCTCCCCAAATCTCGGAGACGCCGAGGATCCGTGGGCGTAAGAGGGC
AGCGGCTTCTCCCCAAATCTCGGAGAAGCCGAGGATCCGTGGGCACCTCA
GGCGGACGCAGGTACCAGTCGCTCACCAGGAGCTCCTGGACCACCAGGTC
CTCAGCGACAGTATTGCGGCAGCAGTGCGTATGCTTCAGAATACCAAGAA
AGCGATCGCCGCCCGCCAAACCAAAGACGACGAGACCGACGAAGAGAACG
ACCCCGGGACCCGTAGGTCGGGCGACCCCTCCTCTTGGGGTAGCACCGGG
GACGACACCGACTCTGACGACTCCCGCTTTGGGGGTGGCCACTTTGTGCC
CATTGGCGTGTAGAGTACCCGACGCCGTGATGTGTTTGGTTCCTCTCTCG
GTGCATCGTTCTTCTCTAGGCTCGGCCTAG
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