mRNA_L-elsbetiae_contig15640.3953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15640.3953.1
Unique NamemRNA_L-elsbetiae_contig15640.3953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.570e-74
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLNQRLV 399
            RVKVFEMDKIFVPVNVSN+HWCMAVI++Q+KRINYYDSMGG GKSV + LLLWLEDEDEDKNGD+ATFEPDDWT VGT V +TPQQENGSDCGAFAVSFASY+SD+L FDF QADI+QMRRRMLWSLL+QRLV
Sbjct:  447 RVKVFEMDKIFVPVNVSNAHWCMAVIFVQQKRINYYDSMGGGGKSVREDLLLWLEDEDEDKNGDNATFEPDDWTTVGTKVASTPQQENGSDCGAFAVSFASYLSDDLPFDFRQADISQMRRRMLWSLLHQRLV 579          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A836CHU4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU4_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.320e-34
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLN 387
            +V +F +DK+ +P NV N HWC+AVIY+QE+RI YYDSMGG G +  ++L  WLEDE +DK G         WT V T  GT PQQENG DCG F   FA YIS++L  +F Q  +   RR +   LL 
Sbjct:   50 KVDIFTLDKVIMPANVGNMHWCLAVIYVQERRIQYYDSMGGRGTTFLNALERWLEDEHKDKKGAPLGAT---WTKVPTIDGT-PQQENGCDCGVFTCMFADYISEDLPLEFGQDHMQHFRRSLALQLLQ 174          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: K3WMB9_GLOUD (ULP_PROTEASE domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMB9_GLOUD)

HSP 1 Score: 129 bits (324), Expect = 7.680e-33
Identity = 62/129 (48.06%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLN 387
            ++ +F MDKIFVPVN+SN+HWCMAVI++ EKRI YYDSM GSG +  + L+ +L DE E+K      F  + W  V T++ +TPQQ+NGSDCG F+  FA ++S N    F Q D+   R RM+  ++ 
Sbjct:  331 KIDLFAMDKIFVPVNISNTHWCMAVIFMSEKRIQYYDSMNGSGSTCLNVLMKYLHDEMENKKHQ--KFSDEGWKLVPTDLDSTPQQQNGSDCGVFSCMFADFLSQNKPLSFSQKDMEFHRSRMVLRIVE 457          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A5D6XMS5_9STRA (ULP_PROTEASE domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMS5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.320e-31
Identity = 65/132 (49.24%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLNQRL 396
            ++ +F MDK+FVPVN+SN+HWCMAVI++ EKRI YYDSM GSG +    LL +L DE E K    A F+ + W  V T  GT PQQ NGSDCG F+  FA ++S N    F Q D+   R RM+  ++   L
Sbjct:  295 KIDLFAMDKVFVPVNISNTHWCMAVIFVTEKRIQYYDSMSGSGTTCLKVLLRYLHDEMEHKKS--AKFDAEGWELVTTEDGT-PQQANGSDCGVFSCMFADFVSLNKPLSFSQKDMEFHRSRMVLRIVQGAL 423          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A7S2V080_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V080_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.120e-31
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLN 387
            ++ VF  +++ VPVNV N HWC+A +++ +KRI YYDSMGG+G++   +L  +L+DE +DK  +  T + +DW  VGT  GT PQQ NG DCG FA  FA Y+S+ L   F Q D+   R ++  ++L 
Sbjct:  140 KLDVFSAERVVVPVNVGNMHWCLACVHVPQKRIQYYDSMGGAGRNYLGALAQYLQDEMKDKKKE--TLDINDWEMVGTVQGT-PQQNNGCDCGVFACMFADYVSEGLPLSFSQKDMPLFREKIALAILQ 265          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A024G250_9STRA (ULP_PROTEASE domain-containing protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G250_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.450e-30
Identity = 60/133 (45.11%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLNQRLV 399
            +V +F MDKIFVPVN+SN+HWC+AVI++++K+I YYDSM G G    ++L  ++ DE +DK   +     DDW  + T +  TPQQ+NG DCG F   FA Y++ N + DF Q D+   R+RM +++L   +V
Sbjct:  324 KVDLFGMDKIFVPVNLSNTHWCLAVIFMKDKKIQYYDSMRGCGLRCLETLRRYICDEMKDKKNTEIVV--DDWELIPTTI-DTPQQKNGFDCGVFTCIFAEYVASNHALDFVQRDMEYHRQRMAYNILQGSIV 453          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A8K1CG44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG44_PYTOL)

HSP 1 Score: 122 bits (307), Expect = 1.800e-30
Identity = 63/129 (48.84%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLN 387
            ++ +F MDKIFVPVNVSN+HWC+AVI++ EKRI Y+DSM G G    + LL +L DE + K      F+ + W  V T  GT PQQENG DCG F   FA Y+S NL   F Q D+   R RM+  ++ 
Sbjct:  315 KIDLFSMDKIFVPVNVSNTHWCLAVIFMTEKRIQYFDSMAGPGTKCLEVLLKYLHDEMQHKK--QQPFDSEGWELVETVPGT-PQQENGWDCGVFTCLFADYLSQNLDLSFSQNDMEFQRNRMILRIVQ 440          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A0N7L7Z0_PLAHL (ULP_PROTEASE domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7Z0_PLAHL)

HSP 1 Score: 122 bits (306), Expect = 4.030e-30
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRML 372
            ++ VF MDKIF P+NV+N HWCMAVI++ EKRI YYDSM GSG S    LL +L DE E K  +   F  + W  V T    TPQQ+NGSDCG F+  FA Y+S N    F Q DI   R RM+
Sbjct:  364 KIDVFAMDKIFFPINVANMHWCMAVIFMTEKRIQYYDSMHGSGASCLKVLLRYLHDESEHKRKE--KFNDEGWELVTTTF-DTPQQKNGSDCGVFSCMFADYLSLNKPLSFVQKDIPFHRHRMV 484          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: W4H7T0_9STRA (ULP_PROTEASE domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7T0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.890e-29
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRMLWSLLN 387
            ++ +F MDKIFVPVN+ N HWC+AVI++QEKRI Y+DSM G+G    D LL +L DE + K      F+   W  VGT    TPQQ+N  DCG F   FA Y+S +    F Q D+   RRRM+  +++
Sbjct:  320 KIDIFAMDKIFVPVNIRNVHWCLAVIFMQEKRIQYFDSMAGTGSQCLDVLLKYLHDESQHKKN--TPFDATGWELVGT-TDDTPQQDNSFDCGVFTCMFADYLSLDRPLTFSQRDMKFYRRRMVLRMVH 445          
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Match: A0A6A3TAC2_9STRA (ULP_PROTEASE domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TAC2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.710e-29
Identity = 64/124 (51.61%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 RVKVFEMDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLEDEDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDNLSFDFCQADITQMRRRML 372
            ++ +F MDKIF+PVNV N HWCMAVI++ EKRI YYDSM GSG +    LL +L DE E K      F+ + W  V T    TPQQ NGSDCG F+  FA Y+S N    F Q DI+  R RM+
Sbjct:  358 KIDLFAMDKIFLPVNVGNMHWCMAVIFMTEKRIQYYDSMLGSGAACLKILLRYLHDESEHKKKQ--KFDEEGWELV-TCTPDTPQQNNGSDCGVFSCMFADYLSQNKPLTFKQKDISFHRHRMV 478          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15640.3953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK6_ECTSI1.570e-7485.71ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A836CHU4_9STRA2.320e-3449.61ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
K3WMB9_GLOUD7.680e-3348.06ULP_PROTEASE domain-containing protein n=1 Tax=Glo... [more]
A0A5D6XMS5_9STRA1.320e-3149.24ULP_PROTEASE domain-containing protein (Fragment) ... [more]
A0A7S2V080_9STRA8.120e-3144.19Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A024G250_9STRA1.450e-3045.11ULP_PROTEASE domain-containing protein n=3 Tax=Alb... [more]
A0A8K1CG44_PYTOL1.800e-3048.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0N7L7Z0_PLAHL4.030e-3052.42ULP_PROTEASE domain-containing protein n=1 Tax=Pla... [more]
W4H7T0_9STRA1.890e-2946.51ULP_PROTEASE domain-containing protein n=10 Tax=Ap... [more]
A0A6A3TAC2_9STRA2.710e-2951.61ULP_PROTEASE domain-containing protein n=9 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15640contigL-elsbetiae_contig15640:1143..2017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.6e-59
Seed eggNOG ortholog2880.D8LMK6
KEGG koko:K08592
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons3
Model size402
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15640.3953.1prot_L-elsbetiae_contig15640.3953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15640 1161..2017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.5488296-UTR-L-elsbetiae_contig15640:1142..11601622815641.5488296-UTR-L-elsbetiae_contig15640:1142..1160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15640 1143..1160 +
1691683008.945225-UTR-L-elsbetiae_contig15640:1142..11601691683008.945225-UTR-L-elsbetiae_contig15640:1142..1160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15640 1143..1160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.5649073-CDS-L-elsbetiae_contig15640:1160..12351622815641.5649073-CDS-L-elsbetiae_contig15640:1160..1235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15640 1161..1235 +
1691683008.9564366-CDS-L-elsbetiae_contig15640:1160..12351691683008.9564366-CDS-L-elsbetiae_contig15640:1160..1235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15640 1161..1235 +
1622815641.5787523-CDS-L-elsbetiae_contig15640:1566..17311622815641.5787523-CDS-L-elsbetiae_contig15640:1566..1731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15640 1567..1731 +
1691683008.9653575-CDS-L-elsbetiae_contig15640:1566..17311691683008.9653575-CDS-L-elsbetiae_contig15640:1566..1731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15640 1567..1731 +
1622815641.5894818-CDS-L-elsbetiae_contig15640:1873..20171622815641.5894818-CDS-L-elsbetiae_contig15640:1873..2017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15640 1874..2017 +
1691683008.9755287-CDS-L-elsbetiae_contig15640:1873..20171691683008.9755287-CDS-L-elsbetiae_contig15640:1873..2017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15640 1874..2017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15640.3953.1

>prot_L-elsbetiae_contig15640.3953.1 ID=prot_L-elsbetiae_contig15640.3953.1|Name=mRNA_L-elsbetiae_contig15640.3953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MDKIFVPVNVSNSHWCMAVIYIQEKRINYYDSMGGSGKSVTDSLLLWLED
EDEDKNGDDATFEPDDWTAVGTNVGTTPQQENGSDCGAFAVSFASYISDN
LSFDFCQADITQMRRRMLWSLLNQRLV*
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mRNA from alignment at L-elsbetiae_contig15640:1143..2017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15640.3953.1 ID=mRNA_L-elsbetiae_contig15640.3953.1|Name=mRNA_L-elsbetiae_contig15640.3953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=875bp|location=Sequence derived from alignment at L-elsbetiae_contig15640:1143..2017+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGAAGGTGTTCGAGATGGACAAGATCTTCGTGCCGGTGAACGTCAG CAACTCACACTGGTGCATGGCCGTCATCTATATACAAGAGAAGGTTAGTC TCTGCTTGTTCAATCAGCCTTGATTTTGCCGCCTGACCGACCTCTAGCGC CCCGTCTTGCTGGCTGGTTCTTTTTCGGTTGAGATGGCTGTCTTTCTCCT TCGCATGCGCAAGCTGACGAATCATGGCGAGATGAGCGACGATAATCCTC TGCATTTTTGAAAGGTATTGCATGTGTGCATCGCACATTCCAGGTGCACG CTTTGTGTCTCCCTCCCATGAGCAATTCTCGGGTTTGCTTCGATTCCAAA ACAGTGTTTGCTTTTTTGATCTGCAACAGTGGCTAGTCCCCCACCGCTCG TTTTCTTCTCTTGACGTTTCGCAGCGGATCAACTACTACGACAGCATGGG GGGAAGCGGTAAGTCGGTGACGGACTCGCTGCTGCTCTGGCTGGAAGACG AAGACGAGGACAAGAACGGCGACGACGCTACCTTCGAGCCCGACGACTGG ACCGCAGTGGGCACCAACGTGGGCACCACCCCACAGCAGGTGTGGTTGCG ACTGATATTTTTTGACACAGCAAACGGCAGTACACGAAACGGTGCATACA AGCCGGCACCTACATAGCCGCTTGGCGAACTAAGTGCTGCTGTCGCGGTC GTGTGTTGTCGGCCTGTTTTTTTTCCGTTAGGAGAACGGCAGCGACTGCG GCGCGTTCGCGGTGTCGTTCGCCTCCTACATCAGCGACAACCTTTCCTTC GACTTCTGCCAGGCGGACATCACACAGATGCGAAGGCGGATGCTCTGGTC GCTCCTCAACCAGCGCTTGGTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15640:1143..2017+

>mRNA_L-elsbetiae_contig15640.3953.1 ID=mRNA_L-elsbetiae_contig15640.3953.1|Name=mRNA_L-elsbetiae_contig15640.3953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig15640:1143..2017+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAAGATCTTCGTGCCGGTGAACGTCAGCAACTCACACTGGTGCAT
GGCCGTCATCTATATACAAGAGAAGATGGACAAGATCTTCGTGCCGGTGA
ACGTCAGCAACTCACACTGGTGCATGGCCGTCATCTATATACAAGAGAAG
CGGATCAACTACTACGACAGCATGGGGGGAAGCGGTAAGTCGGTGACGGA
CTCGCTGCTGCTCTGGCTGGAAGACGAAGACGAGGACAAGAACGGCGACG
ACGCTACCTTCGAGCCCGACGACTGGACCGCAGTGGGCACCAACGTGGGC
ACCACCCCACAGCAGCGGATCAACTACTACGACAGCATGGGGGGAAGCGG
TAAGTCGGTGACGGACTCGCTGCTGCTCTGGCTGGAAGACGAAGACGAGG
ACAAGAACGGCGACGACGCTACCTTCGAGCCCGACGACTGGACCGCAGTG
GGCACCAACGTGGGCACCACCCCACAGCAGGAGAACGGCAGCGACTGCGG
CGCGTTCGCGGTGTCGTTCGCCTCCTACATCAGCGACAACCTTTCCTTCG
ACTTCTGCCAGGCGGACATCACACAGATGCGAAGGCGGATGCTCTGGTCG
CTCCTCAACCAGCGCTTGGTTTAGGAGAACGGCAGCGACTGCGGCGCGTT
CGCGGTGTCGTTCGCCTCCTACATCAGCGACAACCTTTCCTTCGACTTCT
GCCAGGCGGACATCACACAGATGCGAAGGCGGATGCTCTGGTCGCTCCTC
AACCAGCGCTTGGTTTAG
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