mRNA_L-elsbetiae_contig1564.3950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1564.3950.1
Unique NamemRNA_L-elsbetiae_contig1564.3950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1564.3950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1564contigL-elsbetiae_contig1564:8587..9364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size778
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1564.3950.1prot_L-elsbetiae_contig1564.3950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1564 8785..9279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.233176-UTR-L-elsbetiae_contig1564:8586..87841622815641.233176-UTR-L-elsbetiae_contig1564:8586..8784Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1564 8587..8784 +
1691683008.7451632-UTR-L-elsbetiae_contig1564:8586..87841691683008.7451632-UTR-L-elsbetiae_contig1564:8586..8784Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1564 8587..8784 +
1622815641.2575598-UTR-L-elsbetiae_contig1564:9279..93641622815641.2575598-UTR-L-elsbetiae_contig1564:9279..9364Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1564 9280..9364 +
1691683008.7641134-UTR-L-elsbetiae_contig1564:9279..93641691683008.7641134-UTR-L-elsbetiae_contig1564:9279..9364Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1564 9280..9364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.2451272-CDS-L-elsbetiae_contig1564:8784..92791622815641.2451272-CDS-L-elsbetiae_contig1564:8784..9279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 8785..9279 +
1691683008.7558866-CDS-L-elsbetiae_contig1564:8784..92791691683008.7558866-CDS-L-elsbetiae_contig1564:8784..9279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 8785..9279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1564.3950.1

>prot_L-elsbetiae_contig1564.3950.1 ID=prot_L-elsbetiae_contig1564.3950.1|Name=mRNA_L-elsbetiae_contig1564.3950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MPAAAVVSRAVDVVVVVVGGGGGGAAVGRRCLGGPRRQLREGPRGRYAPS
HPPRKSVRLEVAMRHFADVFPVLLWRLRQARCHRPASSWSEQSGAAGAAG
ADGGADVAAACSPDGTCSLAAALGSADTGCCRCRHLRVLPLRLSHLCSAA
LTIGRLPNVAASGP*
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mRNA from alignment at L-elsbetiae_contig1564:8587..9364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1564.3950.1 ID=mRNA_L-elsbetiae_contig1564.3950.1|Name=mRNA_L-elsbetiae_contig1564.3950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=778bp|location=Sequence derived from alignment at L-elsbetiae_contig1564:8587..9364+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTGCCCTCGGGGGAGGTTACCAGTGGGTCCCGTTCGGCCGGGT
CCGGGCCTAAAAGTCGCCCCCTCGGGTGAAACACGAGCGCCACCCTGGAC
TTGTGGGTGGTGCTGCTGGCCCTGATTTTGGCGGTGGAGGCCAGGTCCAG
GACGGTCTTGCTGCCCGGCCGCGCCCTGCGGTGCACCCTCCAGTGGCAAT
GCCTGCTGCTGCTGTTGTTTCCCGCGCTGTTGATGTTGTTGTTGTTGTTG
TTGGTGGTGGTGGTGGCGGGGCTGCGGTGGGGCGGCGTTGCCTCGGCGGT
CCTCGTCGTCAGCTACGCGAGGGGCCCCGCGGCCGGTATGCGCCGTCTCA
CCCCCCCCGGAAGAGCGTCCGTCTCGAGGTAGCGATGCGCCATTTTGCTG
ATGTCTTCCCTGTCCTTCTCTGGCGGCTCCGGCAAGCCCGTTGCCACAGG
CCTGCAAGCTCTTGGTCTGAACAGTCTGGCGCTGCTGGTGCTGCTGGTGC
TGATGGTGGTGCTGATGTTGCGGCTGCCTGCTCCCCTGATGGTACCTGTT
CGCTTGCTGCTGCTCTCGGCTCTGCTGATACCGGTTGTTGCCGGTGCAGG
CACTTGCGTGTCCTGCCCCTGCGGCTGTCCCATCTGTGCTCTGCGGCGCT
GACGATTGGCCGGCTCCCCAACGTTGCTGCCTCTGGGCCGTAGACTGCTC
TGAGGCACTACTGTTATTCTGGGCTGACGGGGGCCCTCCTCCGGCGGAAG
GGGGGGCACGGGACACCGCTTGGAGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1564:8587..9364+

>mRNA_L-elsbetiae_contig1564.3950.1 ID=mRNA_L-elsbetiae_contig1564.3950.1|Name=mRNA_L-elsbetiae_contig1564.3950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig1564:8587..9364+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCTGCTGCTGTTGTTTCCCGCGCTGTTGATGTTGTTGTTGTTGT
TGTTGGTGGTGGTGGTGGCGGGGCTGCGGTGGGGCGGCGTTGCCTCGGCG
GTCCTCGTCGTCAGCTACGCGAGGGGCCCCGCGGCCGGTATGCGCCGTCT
CACCCCCCCCGGAAGAGCGTCCGTCTCGAGGTAGCGATGCGCCATTTTGC
TGATGTCTTCCCTGTCCTTCTCTGGCGGCTCCGGCAAGCCCGTTGCCACA
GGCCTGCAAGCTCTTGGTCTGAACAGTCTGGCGCTGCTGGTGCTGCTGGT
GCTGATGGTGGTGCTGATGTTGCGGCTGCCTGCTCCCCTGATGGTACCTG
TTCGCTTGCTGCTGCTCTCGGCTCTGCTGATACCGGTTGTTGCCGGTGCA
GGCACTTGCGTGTCCTGCCCCTGCGGCTGTCCCATCTGTGCTCTGCGGCG
CTGACGATTGGCCGGCTCCCCAACGTTGCTGCCTCTGGGCCGTAGATGCC
TGCTGCTGCTGTTGTTTCCCGCGCTGTTGATGTTGTTGTTGTTGTTGTTG
GTGGTGGTGGTGGCGGGGCTGCGGTGGGGCGGCGTTGCCTCGGCGGTCCT
CGTCGTCAGCTACGCGAGGGGCCCCGCGGCCGGTATGCGCCGTCTCACCC
CCCCCGGAAGAGCGTCCGTCTCGAGGTAGCGATGCGCCATTTTGCTGATG
TCTTCCCTGTCCTTCTCTGGCGGCTCCGGCAAGCCCGTTGCCACAGGCCT
GCAAGCTCTTGGTCTGAACAGTCTGGCGCTGCTGGTGCTGCTGGTGCTGA
TGGTGGTGCTGATGTTGCGGCTGCCTGCTCCCCTGATGGTACCTGTTCGC
TTGCTGCTGCTCTCGGCTCTGCTGATACCGGTTGTTGCCGGTGCAGGCAC
TTGCGTGTCCTGCCCCTGCGGCTGTCCCATCTGTGCTCTGCGGCGCTGAC
GATTGGCCGGCTCCCCAACGTTGCTGCCTCTGGGCCGTAG
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