mRNA_L-elsbetiae_contig1564.3949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1564.3949.1
Unique NamemRNA_L-elsbetiae_contig1564.3949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1564.3949.1 vs. uniprot
Match: A0A6H5KY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY04_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.770e-23
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 PEGEAAALRARLAEAEAKHAEALARVRELEENNFDLEAAVQMVEVEASHRVEKQAKALQSELTFKDHQLAVAQ 219
            P+G  AALRARLAEA+AK+AEAL RVRELEENNFDLEAA+QM+EVEASHRV++QAKALQS+L FKDHQL  A+
Sbjct:  395 PDG-VAALRARLAEAQAKNAEALERVRELEENNFDLEAAMQMIEVEASHRVDRQAKALQSKLAFKDHQLTTAR 466
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BLAST of mRNA_L-elsbetiae_contig1564.3949.1 vs. uniprot
Match: D7FVV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 8.000e-7
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:  118 VQMVEVEASHRVEKQAKALQSELTFKDHQLAVAQ 219
            +QM+EVEASHRVE+QAKALQS+LTFKDHQL  A+
Sbjct:    1 MQMIEVEASHRVERQAKALQSKLTFKDHQLTTAR 34
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1564.3949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY04_9PHAE6.770e-2379.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV4_ECTSI8.000e-779.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1564contigL-elsbetiae_contig1564:5646..7993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.289414-CDS-L-elsbetiae_contig1564:5647..58361622815641.289414-CDS-L-elsbetiae_contig1564:5647..5836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 5648..5836 -
1691683008.7725136-CDS-L-elsbetiae_contig1564:5647..58361691683008.7725136-CDS-L-elsbetiae_contig1564:5647..5836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 5648..5836 -
1622815641.2997572-CDS-L-elsbetiae_contig1564:7870..79931622815641.2997572-CDS-L-elsbetiae_contig1564:7870..7993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 7871..7993 -
1691683008.781867-CDS-L-elsbetiae_contig1564:7870..79931691683008.781867-CDS-L-elsbetiae_contig1564:7870..7993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 7871..7993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1564.3949.1prot_L-elsbetiae_contig1564.3949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1564 5648..7993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1564.3949.1

>prot_L-elsbetiae_contig1564.3949.1 ID=prot_L-elsbetiae_contig1564.3949.1|Name=mRNA_L-elsbetiae_contig1564.3949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
PEGEAAALRARLAEAEAKHAEALARVRELEENNFDLEAAVQMVEVEASHR
VEKQAKALQSELTFKDHQLAVAQKDHTSAVRELNAERAKRKRDSQQAARE
RQDA
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mRNA from alignment at L-elsbetiae_contig1564:5646..7993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1564.3949.1 ID=mRNA_L-elsbetiae_contig1564.3949.1|Name=mRNA_L-elsbetiae_contig1564.3949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2348bp|location=Sequence derived from alignment at L-elsbetiae_contig1564:5646..7993- (Laminarionema elsbetiae ELsaHSoW15)
CCGGAGGGAGAGGCGGCAGCGCTTCGAGCACGGCTGGCGGAGGCAGAGGC
GAAACACGCCGAGGCGCTGGCGCGCGTGCGAGAGCTGGAGGAGAACAACT
TCGACCTGGAGGCCGCAGTGCAGGTCTGTATGTATGTTCTTTGTTTCCAT
GTATGTTTACGTATGTATTATGTGTTCATGACGAAAAACTTTGTGAAAAG
TACATGTGAGACCATCGAGAAACGGATGTCACACTTCGCGTTAAGGTCAT
GCTTCTTCCATGAGCGTACCAACTTGCGCAGTACCGTAGGTGACACAAGG
TACCACACCCCCTAGACAGACTTTTAGAGCTCCATTCCTCCGTAACTAAG
AAGGTGCCAGCACCAAACGAAACATTTTCGGACAGCCCTCGGCTAGATCT
TTCCAGCGCTACCCTTTTTGGCACTGGCACTCTTCTTGCTGGGGAGGAAT
CGAGCTTCGAAAATCTGCCCAGGGGGTGTGGTATCTTGTGCCACCTACCG
TAGCCTTCGCGGGTTTCACTGGAATAAATCATATGGGATAAAGTGTGGAA
ACGGCTAATGGGGGGTCGGTTTGGGGTTAGGGTTAGGGTCAGGGTTACGG
AACCCCTGCCTATTATTTCCTGTACATTGACAGGAATTCTTTGCGAAGGC
GGTCCAACTTTTGCGAAACCCTCAGACCGGTCGATTCACAGCACAGGCCG
CATATGTCAGTGTTATTGGAACTAAATTTCAAGGGGGCGCATATGCGGGA
GGATTTCAAGGGGGCGCATTCTGTCACGGCCAAAGGCACAGGGCCTCAGT
ATATCCACGCACAAGTCAGCCGATATCTCAGCTTGCAGGACGTGATCCAA
AACGCGACTTTGAGGCTGTGTAGTAGAGATGTGTGGCTACAGAGCGGGCC
AAAAATCTAGGTGGTAGCTCTTGCACTGCATTTAGAGGTGGTATCGCAAA
ATATGATAGGGAAGAGAGAGGGAGAGTCGAAAAAATAGAGCCAGCTGCGA
GACAGACGACCACGATTCCTATACGAAACGCAGCTTCTTGATCCCTGAAG
AGATCCATCGCAAGACCGCGCACGTCAGCAAGAAGAGGGTCTCAGATGTG
CAGAGCACCCACTGAAATGAGCTAACTCGTTGCGTGGCAATTAGAGGAGC
TGCTGCCGTCTGCTGCTGCTGGCCTGGCCGAGGGCACCAACGTGTGCGGG
AAGGCAGCTCTGATTCGACACTCACAGAGCGATTCTGAGTTTAAAATCTG
CACCGGCACTAGCTATGAGCAACATATCGCACCACTTCTAGTTTGTTTGG
TCTGGGATGGGTTATGTGAGCTCCTAGGGCTGGCGCAGTGGTGTCAGCCA
GGCCACAAGAGGGCGGGGGCTTTTGGTGGGGGGGTCTTTAATGCGCGTGC
TTTTTGTCTGCGAGTCCCCGACGAACTTGTGATCGGTGTAAATCATCCGT
ACGCGGCGACTGAAGGACCGATTCGCTTCATTCTTTTTTCTACACCATCC
ACAAAGCCAGTAGCTACAGATTGGTTGTTGTTTCGCCGCCAATCCAGCAC
TCGGCGGTGAGGAATTGACGATAAGGAGCGAATTGGGCGCCCCCTTGAAA
ATTAATCAAAATAACACTATGTAGCATACCTTCCCCCCATATCAACATAC
CTCGCCATGATCCTGTTTAGTTTCAGACGCTCGAAGGTTTCCGCCGGAAC
GTGGCGGCCTACTGCTGTTACCGAGATAGAGAAAAGGCAAACATTTCACA
CGCGTACGCGAGGCTGTCAAGCCCCACGACACGTTTTCCTCGCGACCCTG
GGCACACCGGGAGGAATTCCGCTTTCGTAGGGTTCAGCAGGGAGAATTCC
CAAGACGTTGTTCGCTTGTCTAAATGTCCGCTGTTCTTGGGAAAGTGTTG
TCGACAAGGTACATCTTCTTTCTTGCAGATGGCGTTTTTTTTTCCCCGCA
GATTGCTCGGGGGAATGGTGCGAGGCAAAGCTACACAGCCAATGCGGTCA
CAGGGGTAGAAGAGGCCCTTAGTTCTTGTTGATTTTGAAGCTGATCAACT
TGATCGAGCAAAGCTACGCATTGTTTCGGTCTGTAGTGCGCGAAGCTAAC
TCTTGTGCGCGCCGCCGTGATCGCCCCCCGCCCCCCTAAATATCTCTTGG
CGCTCAGATGGTCGAGGTCGAAGCTTCCCACCGGGTGGAGAAACAAGCCA
AAGCGCTCCAGAGCGAGCTGACCTTCAAAGACCACCAGCTCGCGGTAGCC
CAGAAAGACCACACGAGCGCGGTCCGCGAGCTGAACGCGGAGCGGGCGAA
GAGGAAGAGGGACTCCCAGCAGGCAGCGCGGGAGCGGCAAGACGCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1564:5646..7993-

>mRNA_L-elsbetiae_contig1564.3949.1 ID=mRNA_L-elsbetiae_contig1564.3949.1|Name=mRNA_L-elsbetiae_contig1564.3949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1564:5646..7993- (Laminarionema elsbetiae ELsaHSoW15)
CCGGAGGGAGAGGCGGCAGCGCTTCGAGCACGGCTGGCGGAGGCAGAGGC
GAAACACGCCGAGGCGCTGGCGCGCGTGCGAGAGCTGGAGGAGAACAACT
TCGACCTGGAGGCCGCAGTGCAGCCGGAGGGAGAGGCGGCAGCGCTTCGA
GCACGGCTGGCGGAGGCAGAGGCGAAACACGCCGAGGCGCTGGCGCGCGT
GCGAGAGCTGGAGGAGAACAACTTCGACCTGGAGGCCGCAGTGCAGATGG
TCGAGGTCGAAGCTTCCCACCGGGTGGAGAAACAAGCCAAAGCGCTCCAG
AGCGAGCTGACCTTCAAAGACCACCAGCTCGCGGTAGCCCAGAAAGACCA
CACGAGCGCGGTCCGCGAGCTGAACGCGGAGCGGGCGAAGAGGAAGAGGG
ACTCCCAGCAGGCAGCGCGGGAGCGGCAAGACGCCATGGTCGAGGTCGAA
GCTTCCCACCGGGTGGAGAAACAAGCCAAAGCGCTCCAGAGCGAGCTGAC
CTTCAAAGACCACCAGCTCGCGGTAGCCCAGAAAGACCACACGAGCGCGG
TCCGCGAGCTGAACGCGGAGCGGGCGAAGAGGAAGAGGGACTCCCAGCAG
GCAGCGCGGGAGCGGCAAGACGCC
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