mRNA_L-elsbetiae_contig1563.3941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1563.3941.1
Unique NamemRNA_L-elsbetiae_contig1563.3941.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D7FZF9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZF9_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 2.350e-160
Identity = 263/347 (75.79%), Postives = 297/347 (85.59%), Query Frame = 1
Query:   13 RRNGMAARGTGALGLAALAVATRSVTAI----DCPPLDLVNYNLTDYIRYSTTSDMMYLENGACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGNGIMLH 1041
            R NG AA+   A+ +AA    TRS  A     +CPP+DLVN+N+TDYIR+ST SD +YLENGAC TM DI+ +RID++T EN GPVYPFDE T  IT N TGSWYLGSSL+VTEG+RLVVQGL+KGGDCDHLLLASS +KFI +RA+GGEI++DGTHVESWD+  G VDE+Y+DGRSYLSAISEVI +P   C+G A N+MGEAR+DIIDSEINHLG+YESESYGIAYKVRGFC DLSN E+F++V VTGDIL SHIHHLYFGHYSYGHQGGNWSYN VHDN+GYGFDPHDDSD VTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX H+ D GK TGNGIMLH
Sbjct:    8 RPNGAAAKKIVAVLVAAALGNTRSAAATTVATNCPPMDLVNHNITDYIRWSTMSDRLYLENGACATMTDIYESRIDTYTGENKGPVYPFDETTGGITNNVTGSWYLGSSLYVTEGARLVVQGLSKGGDCDHLLLASSAEKFINVRAYGGEIMLDGTHVESWDLLEGTVDENYDDGRSYLSAISEVIINPAMECEGMATNDMGEARMDIIDSEINHLGHYESESYGIAYKVRGFCNDLSNPELFETVGVTGDILGSHIHHLYFGHYSYGHQGGNWSYNTVHDNVGYGFDPHDDSDYVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHVTDAGKITGNGIMLH 354          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 432 bits (1112), Expect = 7.010e-146
Identity = 236/310 (76.13%), Postives = 273/310 (88.06%), Query Frame = 1
Query:   97 DCPPLDLVNYNLTDYIRYSTTSDMMYLENGACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGN 1026
            DC  +DLVN+N+TDYIR+S  SD +YLENGACVT+ DI+ +R+D   N+  GP+YPFDE T  I+   TGSWYL S+L++TEGSRLVVQGL+KGGDCDHLLLASSP+KFI +RAHGGE+++DGTHVESWD+ AG VDE+ EDGRSYLSAISEVITDP ETCDGTA+N+MGEAR+DIIDSE+NHLG+Y+SESYGIAYKVRGFCKDLSN E+FDSVSVTGDIL S IH  YFGHYSYGHQGGNWS+N++H NIGYGFDPHDDSD +TI NN  XXXXXXXXXXXXXXXXXXXXXXXXXXX HI++ G+ TGN
Sbjct:   50 DCTSMDLVNHNITDYIRWSNMSDRLYLENGACVTLTDIYESRLDDTGNK--GPLYPFDETTLDISDTVTGSWYLESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITDPAETCDGTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNNEVXXXXXXXXXXXXXXXXXXXXXXXXXXXGHINEAGQRTGN 357          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 1.970e-124
Identity = 217/305 (71.15%), Postives = 248/305 (81.31%), Query Frame = 1
Query:  172 YLENGACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINH--------------------LGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGN 1026
            YLENGACVT+ DI+ +R D   N+  GP+YPFDE    I+   TGSWYL SSL++TEGSRLVVQGL+KGGDCDHLLLASSP+KFI +RAHGGE+++DGTHVESWD+ AG VDE+ EDGRSYLSAISEVITDP ETCDGTA+N+MGEAR+DIIDSE+N                     LG+Y+SESYGI+YKVRGFC DLSN E+FDSVSVTGDIL S IH  YFGHYSYGHQGGNWS+N++H NIGYGFDPHDDSD +TI NN   XXXXXXXXXXXXXXXXXXXXXXXXXX HI++ G+ TGN
Sbjct:   35 YLENGACVTLTDIYESRSDDSGNK--GPLYPFDETALDISDTVTGSWYLESSLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINVRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITDPTETCDGTAKNDMGEARMDIIDSEVNRTTQTSHSAPLTSRLPQYKTDLGWYDSESYGISYKVRGFCTDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYLTIHNNEVYXXXXXXXXXXXXXXXXXXXXXXXXXXGHINEAGQRTGN 337          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.220e-82
Identity = 137/258 (53.10%), Postives = 179/258 (69.38%), Query Frame = 1
Query:  142 IRYSTTSDMMYLEN----GACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNN 903
            +RY++T+  +Y+E     G C T+ +I+ +         + P+YP +  T +     TG W L   L+VT+G  L V G  +GGDCD L L S    FI +RAHGG     GT V SW+   G VD ++EDGRSY+SA+SEVI DP +TC+GTA++ MGEAR+D+IDSEI  LGYYESESYG+ +KVRGFC D SN ++FD V+V GD++NS+IH  YFGHYSYGHQGGNWSYN++H+N+ YGFDPHDDSD + I  N
Sbjct:  359 VRYASTTARIYVEQATNRGGCFTLTEIWES--------GSRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVEYGFDPHDDSDYLHIVGN 608          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.410e-80
Identity = 143/315 (45.40%), Postives = 186/315 (59.05%), Query Frame = 1
Query:  142 IRYSTTSDMMYLEN-------GACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGNGIMLHRSCDFATV 1065
            IRY+ ++  +YLE+       G CVT+  I+ +R         GP+Y  D  +  ++T+ TG+W L   L+V +G  L V G   GGD D L L S+ + FI +RAHGG +    T V SWD      DED  DGRSY+SAISE+ITD  ETC+G A+N MGEAR+DI  SEI +LGY++SESYG+ +KVRGFC+D SN E+FD V+V G++ +S IHH+ FG Y+YGHQ G+W  N++HDN GYGFDPHDDSD +TI +N                                   G  T  GI LHRS D A V
Sbjct:   46 IRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGK------GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYG-------GAETSAGIFLHRSSDDAIV 347          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 9.050e-80
Identity = 144/315 (45.71%), Postives = 186/315 (59.05%), Query Frame = 1
Query:  142 IRYSTTSDMMYLEN-------GACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGNGIMLHRSCDFATV 1065
            IRY+ T+  +YLE+       G CVT+  I+ +R         GP+Y  D  +  ++T+ TG+W L   L+V +G  L V G   GGD D L L S+ + FI +RAHGG +    T V SWD      DED  DGRSY+SAISE+ITD  ETC+G A+N MGEAR+DI  SEI +LGY++SESYG+ +KVRGFC+D SN E+FD V+V G++ +S IHH+ FG Y+YGHQ G+W  N++HDN GYGFDPHDDSD +TI +N                                   G  T  GI LHRS D A V
Sbjct:   46 IRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGK------GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYG-------GAETSAGIFLHRSSDDAIV 347          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.050e-79
Identity = 141/296 (47.64%), Postives = 187/296 (63.18%), Query Frame = 1
Query:   49 LGLAALAVATRSVTAIDCPPLDLVNY-----NLTDYIRYSTTSDMMYLEN------GACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNN 903
            LGL  LA   R+  A    P D ++      ++   IRY++++  +YLE+      G CVT+  I+  R          P+Y  D  +   + N TG+W L   L+V +G  L V G  +GGD D L L S+ D +I +RAHGG +   GT V SWD      DED  DGRSY+SAISE+ITD  ETC+G A+N MGEAR+DI +SEI +LG+ +SESYG+ +KVRGFCKD SN  IFD V+V G++ +S IHH+ FG Y+YGHQ G+W  N++HDN GYGFDPHDDSD +TI +N
Sbjct:   16 LGL--LAATMRAAAADTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGK------APLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDN 303          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 2.210e-78
Identity = 135/261 (51.72%), Postives = 177/261 (67.82%), Query Frame = 1
Query:  142 IRYSTTSDMMYLEN------GACVTMEDIF-HARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNN 903
            IRYS+  + +YLE+      G CVT+E I+ H R ++       P+Y  D  +  I+ + TG+W L   LFV +G  L V G + GGD D L L S+ D FI +RAHGG +    T V +WD    G D D EDGRSY+SA+SEVITD  +TC+G A+NNMGEAR+DI DSE+ +LGY+ SESYG+ +KVRGFC D SN ++F+ V+V G+I +S IHH  FG Y+YGHQ G+W  N++HDN GYGFDPHDDSD +TI +N
Sbjct:   44 IRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEA-------PLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDN 297          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 4.360e-78
Identity = 153/362 (42.27%), Postives = 203/362 (56.08%), Query Frame = 1
Query:   13 RRNGMAARGTGALGLAALAVATRSVTAIDCPPLDLVNYNLTDY-----IRYSTTSDMMYLEN------GACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGNGIMLHRSCDFATV 1065
            R++  ++ G   LGL  LA  T +  A    P D ++    D      IRY+ T+  +YLE+      G C T+  I+ +R          P+Y  D  +  ++   TG+W L   L+V +G  L V G  +GGD D L L S+ + +I +RAHGG +   GT V SWD      DED  DGRSY+SA+SE++TD  ETC+G A+N MGEAR+DI +SEI +LG+ +SESYG+ +KVRGFCKD SN EIFD V+V G++ +S IHHL FG Y+YGHQ G+W  N++HDN GYGFDPHDDSD +TI +N                                   G  T  GI LHRS D A V
Sbjct:    5 RKSATSSFGLALLGL--LASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGK------APLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYG-------GAETSAGIFLHRSSDDAIV 351          
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 1.320e-75
Identity = 137/321 (42.68%), Postives = 185/321 (57.63%), Query Frame = 1
Query:  142 IRYSTTSDMMYLE------NGACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNFTGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDK-------FIQIRAHGGEILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNNMGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTGDILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIDDEGKPTGNGIMLHRSCDFATV 1065
            IRYS T+  +YLE       G CVT+E I+ AR    T     P+Y  D ++ + +   TG+W L   L+V +G  L V G   GG  D L L S+P         +I +RAHGG +  + T V  WD      D D  DGRSY+SA+SE++ DP +TC+G A+N MGEAR+DI++SE+ ++G+++SESYG+ +KVRGFCKD SN E+FD V+V G+I +S +HH+ F  Y+YGHQ G+W  N VH N GYG+DPHDDSD +TI +N                              +I   G  T  GI LHRS D+A V
Sbjct:  123 IRYSATTGRLYLEAGVEGERGGCVTVEQIWEARGGGTTTGAKAPLYAVDPVSGEYSDVITGTWLLEEDLYVEDGITLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQG-------NIVYGGNDTSAGIFLHRSSDYAVV 436          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1563.3941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZF9_ECTSI2.350e-16075.79Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FZF8_ECTSI7.010e-14676.13Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KBD3_9PHAE1.970e-12471.15MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FMJ0_ECTSI1.220e-8253.10Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI1.410e-8045.40Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI9.050e-8045.71Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE2.050e-7947.64MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAJ7_9PHAE2.210e-7851.72Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
D7FXE4_ECTSI4.360e-7842.27Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LD45_ECTSI1.320e-7542.68Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1563contigL-elsbetiae_contig1563:3..3659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue3.2e-62
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons7
Model size1065
Cds size1065
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.57384-CDS-L-elsbetiae_contig1563:2..1331622815640.57384-CDS-L-elsbetiae_contig1563:2..133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 3..133 -
1691683008.3483422-CDS-L-elsbetiae_contig1563:2..1331691683008.3483422-CDS-L-elsbetiae_contig1563:2..133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 3..133 -
1622815640.5850267-CDS-L-elsbetiae_contig1563:362..4621622815640.5850267-CDS-L-elsbetiae_contig1563:362..462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 363..462 -
1691683008.3605616-CDS-L-elsbetiae_contig1563:362..4621691683008.3605616-CDS-L-elsbetiae_contig1563:362..462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 363..462 -
1622815640.6002293-CDS-L-elsbetiae_contig1563:759..9501622815640.6002293-CDS-L-elsbetiae_contig1563:759..950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 760..950 -
1691683008.369717-CDS-L-elsbetiae_contig1563:759..9501691683008.369717-CDS-L-elsbetiae_contig1563:759..950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 760..950 -
1622815640.6133459-CDS-L-elsbetiae_contig1563:1221..13341622815640.6133459-CDS-L-elsbetiae_contig1563:1221..1334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 1222..1334 -
1691683008.378988-CDS-L-elsbetiae_contig1563:1221..13341691683008.378988-CDS-L-elsbetiae_contig1563:1221..1334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 1222..1334 -
1622815640.6235113-CDS-L-elsbetiae_contig1563:1767..19331622815640.6235113-CDS-L-elsbetiae_contig1563:1767..1933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 1768..1933 -
1691683008.3933167-CDS-L-elsbetiae_contig1563:1767..19331691683008.3933167-CDS-L-elsbetiae_contig1563:1767..1933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 1768..1933 -
1622815640.6335206-CDS-L-elsbetiae_contig1563:2172..23661622815640.6335206-CDS-L-elsbetiae_contig1563:2172..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 2173..2366 -
1691683008.4072547-CDS-L-elsbetiae_contig1563:2172..23661691683008.4072547-CDS-L-elsbetiae_contig1563:2172..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 2173..2366 -
1622815640.6456914-CDS-L-elsbetiae_contig1563:3489..36591622815640.6456914-CDS-L-elsbetiae_contig1563:3489..3659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 3490..3659 -
1691683008.416876-CDS-L-elsbetiae_contig1563:3489..36591691683008.416876-CDS-L-elsbetiae_contig1563:3489..3659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1563 3490..3659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1563.3941.1prot_L-elsbetiae_contig1563.3941.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1563 3..3659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1563.3941.1

>prot_L-elsbetiae_contig1563.3941.1 ID=prot_L-elsbetiae_contig1563.3941.1|Name=mRNA_L-elsbetiae_contig1563.3941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=355bp
MRAARRNGMAARGTGALGLAALAVATRSVTAIDCPPLDLVNYNLTDYIRY
STTSDMMYLENGACVTMEDIFHARIDSFTNENTGPVYPFDEMTQQITTNF
TGSWYLGSSLFVTEGSRLVVQGLAKGGDCDHLLLASSPDKFIQIRAHGGE
ILIDGTHVESWDIEAGGVDEDYEDGRSYLSAISEVITDPLETCDGTAQNN
MGEARLDIIDSEINHLGYYESESYGIAYKVRGFCKDLSNTEIFDSVSVTG
DILNSHIHHLYFGHYSYGHQGGNWSYNEVHDNIGYGFDPHDDSDNVTISN
NHVYNNGWHGIIASKRCDHVSIQNNIVHDNGHIDDEGKPTGNGIMLHRSC
DFATV
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mRNA from alignment at L-elsbetiae_contig1563:3..3659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1563.3941.1 ID=mRNA_L-elsbetiae_contig1563.3941.1|Name=mRNA_L-elsbetiae_contig1563.3941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3657bp|location=Sequence derived from alignment at L-elsbetiae_contig1563:3..3659- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGCGGCGAGACGCAACGGTATGGCGGCAAGGGGTACGGGCGCGCT AGGGCTGGCAGCGCTAGCTGTGGCCACGCGATCGGTGACTGCGATAGACT GCCCCCCACTGGATCTGGTCAACTACAACCTCACCGACTACATCCGCTAC AGTACAACCAGCGACATGATGTGAGTGTACAGCTCGTGTGACAGATGGGG ACCGCGAGGTGCACATGTATCTAGGTCTAGTCTACAGTAGTTGAGGCTCT ACTATGACCCTACCGACAAGGTGAAGAGAGCCTACTCACCTGGCAGCGAC AACTTCAGTCGCCCCGATGGTGGGCTGGTCCGTCTTTCACTTCCAAATAG ATTGGTTGCTCACCGGAGTGTGCAGGTGCGGGTCATTTTATTTCCGGTGT TGTTGTAGTGCGCGATCCTTGAACACAAACATACGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTTCA CATTAAAAATTAAAAACAGTTCCGATCTCTCCGTCCAGTACCTCCCTATG AGCATATTTGATGCGGTCAATTCCCGTGATCACGCAGGCTAACTTAGATC TAAAAAAAGGTATCCAAGACAATATTAGATACTGTACGAAAATAAAATGG ACCCGAGGGTCGCAACGCGATAAATAAAAGACAAATACTGTAGTGTGGAG CCCCCCGCTCCCCCGACACACTATGCGAGGTAAAAACAAAACTAGACAAG CCAACATCACCATCCGGGCGTATAACCCCAAGTATACACACAGAACGCGC CACGACCTAAGAACTTGGCAGTTAAGAACTCCGTACTCAAAATATCGAAT ATATAAGAACCTGAGCACATTTGAGCCCCCGCACACGCCACACTCAAACC TATAGTCTAGATCTCTATGAAACGCGGCTTGCCGCACAAAAAATAAGACG AGCCTCACCGAAAATAGGCGGGTGGCGCGCCCTGTGCAACAAGTTCTAGT ACTACTGCTGCGCGTACTGTGCACAAACCCACGCCGTAGGTTTTGCTGTT GCATCAACACGTAAGTAACTACACATGGACTAGACTTATAAATTTCAACC CGCCAATGGGTGCACTCTTTAAAATGACGGCTTATGAGGTTTTTACCTAC GTAGGTCTGAGCCGTTCTGGATTTCCGTGCGTCCGAAATACGGAATCGGT CCGCATCCTCTGGCCCGTTCCTCACAAAAATCCCGCTACTACTGCCTGTG CCCTCTCTCTTCCTGCATTGCCCTTCCCGCGCATACGCAATAGGTACTTG GAGAACGGCGCCTGCGTAACGATGGAGGACATTTTCCACGCACGCATCGA TTCGTTCACGAATGAAAACACGGGGCCCGTGTATCCCTTCGACGAGATGA CACAACAGATAACGACCAACTTCACCGGGTCCTGGTACCTCGGATCCAGC CTCTTCGTCACCGAGGGCTCGAGGCTCGTTGTGCAGGGTAAAAAATATAC GACGAAGTGGGGGTTTGGGAGGAATAAAGGGGCGGGATTTAGTTTAGTGT TGGGTCGTGCATTTCCTAGTCGTCTAGATATATAGTCTAGAGCACGTCCA GAGAGATAGTAAGACCTCGGAGTATTACAGAGTATTTCGAAGGTATACAT TTTTCGTCCTCTAAACATCGTATTACCTCTGCGCTCACTCATCCCCTCTC CCTCGTGTTTTCCTTCTTTTACACAGGCTTGGCAAAGGGCGGAGACTGCG ACCACCTTCTGCTGGCCTCTTCTCCAGACAAGTTCATCCAAATCCGGGCA CACGGCGGCGAGATACTGATCGACGGCACGCACGTGGAGTCGTGGGACAT AGAAGCGGGGGGCGTCGACGAGGACTACGAGGACGGCCGAAGGTGCTTGC CGTGCCGGCGTTTTGTCTGATTCATGATTCATCCACGAATGGTGCCGCGT TCTACCTCTTTTTGCGCCTCTCAGTACGAGTTTGTTGATTAGGTTTGGTT CCTATCTTAATTTTCTCTTCGACGAGTTTCCTTGATGGAACAGGGCGAAG GTATCGATTGTAGCAGAAGAAGCTGACGAAACCAAAGCGCAGTCTCGATT GAGTCAAATCAACCAATACTGGGCTCGTTTTTGTCACACGCGTTCGCGTT GCATCCATTTCCTTCCTCCCGTTCACCGCACCGCGCGCACACACACACAC CACTCTCGGCCATTCGTAACCGGCAGTTTAAATAAAGGATCAAATTATAC CAGAAGTGTGTATCTGATCTAGACCCTAAATCCCGATTCTTCTATATCTC AACCCTAAACCTTGTGTGCTAACAGCTACCTCAGCGCTATCAGCGAGGTC ATCACGGACCCGCTGGAGACGTGTGATGGGACGGCCCAGAACAACATGGG CGAGGCCAGGCTGGATATCATCGACTCGGAGATCAACCGTGAGTGAGAGC TGGAGATCGCTTCAAGCCCCAGACTGCCGACCTGGCCCGACCGAATGGAC TCTACCAGGGTCCGAGCTGCTCTGGTATCTAGTGGCTTAAGGCGCGCTGT TTGTTTGCTTACCCATAATATTACACGGGTAGTAGGTGGCCTGTAGGTGG CCCTTGACCCTGAACCACCTGACTGGCGGACTACGAATAATAATTGAAAT TAAACCTAATTCCATCTTATCTTCCGTGTCGAAACTTTATCCGTGCGCAA ACGAAACAGACCTCGGGTACTACGAGTCGGAGAGCTACGGCATCGCCTAC AAGGTCCGCGGCTTCTGCAAGGACCTTTCCAACACGGAGATTTTTGACTC GGTGTCGGTGACTGGGGACATTCTCAACTCGCACATCCACCATCTCTACT TCGGGCACTACTCCTACGGGCACCAGGGCGGAAACTGGAGCTACAACGAG GTCAGTAGAAAGAGTGGATGCTGCTTGCTTTTTTCATTGGATGAAAAACA ATATTGGAGTTCACGACGCCCTCACTTAAGGGTATTTATTCTCCAAGAAA TTTCTTCACGGTGCGTTCTATTTTGTTTTTCGTGTTTCTGTAAACACTGT TAATCACGCAGTGTCATATTGGAGATGTTGTCCGAATATGTGGTGCTTTC CCTCGATGTCTCCCCAATCTTTTTTTTTTATACTATCTATCTAATCAACG GTGTTTTTTTTCCTTTGCTGATCTTTTGTGTGACCAAATCTCATCAGGTG CATGACAACATCGGCTACGGGTTTGACCCGCATGACGACTCCGACAACGT CACCATCAGCAACAACCACGTCTACAACAACGGCTGGCACGGAATCAGTG AGTAGTGCCTCTTCGAAGCCAACACCACTTGTCGACGGGGAAGAGGGAGA TAAACTAGAGGCCAAAATGTTTTGTTCGCCCAGTTCAGCCATGCAGAAAC AAACGCAATCCACTCATTCGCTCATCTGATTCTCCCGTGTTTCCCGAGTG CTCCTCGACTGACTGACTAACCCCCGCCCGCCCACGCAACCCATTATATT CACTACGTGTGTCTTGTTCTCTCCAGTCGCCTCGAAGAGGTGCGACCACG TGAGCATCCAGAACAACATCGTGCACGACAACGGGCACATCGACGATGAG GGCAAGCCGACCGGTAACGGCATCATGCTCCACCGCAGCTGCGACTTCGC GACGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1563:3..3659-

>mRNA_L-elsbetiae_contig1563.3941.1 ID=mRNA_L-elsbetiae_contig1563.3941.1|Name=mRNA_L-elsbetiae_contig1563.3941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2130bp|location=Sequence derived from alignment at L-elsbetiae_contig1563:3..3659- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGCGGCGAGACGCAACGGTATGGCGGCAAGGGGTACGGGCGCGCT
AGGGCTGGCAGCGCTAGCTGTGGCCACGCGATCGGTGACTGCGATAGACT
GCCCCCCACTGGATCTGGTCAACTACAACCTCACCGACTACATCCGCTAC
AGTACAACCAGCGACATGATATGCGAGCGGCGAGACGCAACGGTATGGCG
GCAAGGGGTACGGGCGCGCTAGGGCTGGCAGCGCTAGCTGTGGCCACGCG
ATCGGTGACTGCGATAGACTGCCCCCCACTGGATCTGGTCAACTACAACC
TCACCGACTACATCCGCTACAGTACAACCAGCGACATGATGTACTTGGAG
AACGGCGCCTGCGTAACGATGGAGGACATTTTCCACGCACGCATCGATTC
GTTCACGAATGAAAACACGGGGCCCGTGTATCCCTTCGACGAGATGACAC
AACAGATAACGACCAACTTCACCGGGTCCTGGTACCTCGGATCCAGCCTC
TTCGTCACCGAGGGCTCGAGGCTCGTTGTGCAGGGTACTTGGAGAACGGC
GCCTGCGTAACGATGGAGGACATTTTCCACGCACGCATCGATTCGTTCAC
GAATGAAAACACGGGGCCCGTGTATCCCTTCGACGAGATGACACAACAGA
TAACGACCAACTTCACCGGGTCCTGGTACCTCGGATCCAGCCTCTTCGTC
ACCGAGGGCTCGAGGCTCGTTGTGCAGGGCTTGGCAAAGGGCGGAGACTG
CGACCACCTTCTGCTGGCCTCTTCTCCAGACAAGTTCATCCAAATCCGGG
CACACGGCGGCGAGATACTGATCGACGGCACGCACGTGGAGTCGTGGGAC
ATAGAAGCGGGGGGCGTCGACGAGGACTACGAGGACGGCCGAAGGCTTGG
CAAAGGGCGGAGACTGCGACCACCTTCTGCTGGCCTCTTCTCCAGACAAG
TTCATCCAAATCCGGGCACACGGCGGCGAGATACTGATCGACGGCACGCA
CGTGGAGTCGTGGGACATAGAAGCGGGGGGCGTCGACGAGGACTACGAGG
ACGGCCGAAGCTACCTCAGCGCTATCAGCGAGGTCATCACGGACCCGCTG
GAGACGTGTGATGGGACGGCCCAGAACAACATGGGCGAGGCCAGGCTGGA
TATCATCGACTCGGAGATCAACCCTACCTCAGCGCTATCAGCGAGGTCAT
CACGGACCCGCTGGAGACGTGTGATGGGACGGCCCAGAACAACATGGGCG
AGGCCAGGCTGGATATCATCGACTCGGAGATCAACCACCTCGGGTACTAC
GAGTCGGAGAGCTACGGCATCGCCTACAAGGTCCGCGGCTTCTGCAAGGA
CCTTTCCAACACGGAGATTTTTGACTCGGTGTCGGTGACTGGGGACATTC
TCAACTCGCACATCCACCATCTCTACTTCGGGCACTACTCCTACGGGCAC
CAGGGCGGAAACTGGAGCTACAACGAGACCTCGGGTACTACGAGTCGGAG
AGCTACGGCATCGCCTACAAGGTCCGCGGCTTCTGCAAGGACCTTTCCAA
CACGGAGATTTTTGACTCGGTGTCGGTGACTGGGGACATTCTCAACTCGC
ACATCCACCATCTCTACTTCGGGCACTACTCCTACGGGCACCAGGGCGGA
AACTGGAGCTACAACGAGGTGCATGACAACATCGGCTACGGGTTTGACCC
GCATGACGACTCCGACAACGTCACCATCAGCAACAACCACGTCTACAACA
ACGGCTGGCACGGAATCAGTGCATGACAACATCGGCTACGGGTTTGACCC
GCATGACGACTCCGACAACGTCACCATCAGCAACAACCACGTCTACAACA
ACGGCTGGCACGGAATCATCGCCTCGAAGAGGTGCGACCACGTGAGCATC
CAGAACAACATCGTGCACGACAACGGGCACATCGACGATGAGGGCAAGCC
GACCGGTAACGGCATCATGCTCCACCGCAGCTGCGACTTCGCGACGGTCT
CGCCTCGAAGAGGTGCGACCACGTGAGCATCCAGAACAACATCGTGCACG
ACAACGGGCACATCGACGATGAGGGCAAGCCGACCGGTAACGGCATCATG
CTCCACCGCAGCTGCGACTTCGCGACGGTC
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