mRNA_L-elsbetiae_contig15624.3940.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15624.3940.1
Unique NamemRNA_L-elsbetiae_contig15624.3940.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15624.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15624contigL-elsbetiae_contig15624:336..980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15624.3940.1prot_L-elsbetiae_contig15624.3940.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15624 336..768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.511035-CDS-L-elsbetiae_contig15624:335..5871622815640.511035-CDS-L-elsbetiae_contig15624:335..587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15624 336..587 +
1691683008.3118367-CDS-L-elsbetiae_contig15624:335..5871691683008.3118367-CDS-L-elsbetiae_contig15624:335..587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15624 336..587 +
1622815640.5228767-CDS-L-elsbetiae_contig15624:603..7681622815640.5228767-CDS-L-elsbetiae_contig15624:603..768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15624 604..768 +
1691683008.3229022-CDS-L-elsbetiae_contig15624:603..7681691683008.3229022-CDS-L-elsbetiae_contig15624:603..768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15624 604..768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.536102-UTR-L-elsbetiae_contig15624:768..9801622815640.536102-UTR-L-elsbetiae_contig15624:768..980Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15624 769..980 +
1691683008.3327236-UTR-L-elsbetiae_contig15624:768..9801691683008.3327236-UTR-L-elsbetiae_contig15624:768..980Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15624 769..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15624.3940.1

>prot_L-elsbetiae_contig15624.3940.1 ID=prot_L-elsbetiae_contig15624.3940.1|Name=mRNA_L-elsbetiae_contig15624.3940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
YYRSSVRHKPKTLSTETRSRTSGFSIFGILREVAFSHKKTPPNGFPLKRD
TLFILQTPGAHTNELLNKEHKKKLATFSTSTAKTPQENVSEKRTATTNDL
SSKDARDTATNSFSLRLRAVGVDELISNTRGRGRWLLA*
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mRNA from alignment at L-elsbetiae_contig15624:336..980+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15624.3940.1 ID=mRNA_L-elsbetiae_contig15624.3940.1|Name=mRNA_L-elsbetiae_contig15624.3940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=645bp|location=Sequence derived from alignment at L-elsbetiae_contig15624:336..980+ (Laminarionema elsbetiae ELsaHSoW15)
TATTACAGATCCTCAGTACGGCACAAGCCTAAAACGCTCTCAACGGAAAC
ACGTTCGAGAACAAGCGGCTTCTCTATTTTCGGTATACTGAGGGAAGTTG
CATTTAGTCACAAGAAAACGCCTCCCAATGGCTTTCCTTTGAAACGGGAC
ACTCTTTTCATCCTTCAAACGCCCGGTGCTCATACAAACGAGCTACTAAA
TAAAGAACACAAGAAAAAACTCGCTACCTTCAGTACGTCTACAGCCAAGA
CACACCGATCAAGCAATGCCACAAGAAAATGTAAGCGAAAAACGCACCGC
AACGACAAACGATTTAAGCTCGAAAGATGCCCGCGACACAGCAACCAACA
GCTTCAGCCTGAGACTCCGTGCTGTAGGCGTTGACGAGTTGATTTCGAAC
ACCAGAGGTCGCGGTCGTTGGCTGCTCGCTTGACGACCATCCCTTCCACC
GCGTCGTTGTTGAATTGAAGACCTGGAGAATTTAGGCGAAAATCTCCGAG
AAAAGCAAAAACACAGGGTGACTTCCAGTTTTAGCAGCAGAAATCACTGT
GAAAAACATGTCAGCTAGCTTACACTCATGCGCAAACAAAGGCAAGCTGA
AACAAAAATGGTACTCCCTCGGTCGACACCGACGAAACACACGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15624:336..980+

>mRNA_L-elsbetiae_contig15624.3940.1 ID=mRNA_L-elsbetiae_contig15624.3940.1|Name=mRNA_L-elsbetiae_contig15624.3940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig15624:336..980+ (Laminarionema elsbetiae ELsaHSoW15)
TATTACAGATCCTCAGTACGGCACAAGCCTAAAACGCTCTCAACGGAAAC
ACGTTCGAGAACAAGCGGCTTCTCTATTTTCGGTATACTGAGGGAAGTTG
CATTTAGTCACAAGAAAACGCCTCCCAATGGCTTTCCTTTGAAACGGGAC
ACTCTTTTCATCCTTCAAACGCCCGGTGCTCATACAAACGAGCTACTAAA
TAAAGAACACAAGAAAAAACTCGCTACCTTCAGTACGTCTACAGCCAAGA
CATATTACAGATCCTCAGTACGGCACAAGCCTAAAACGCTCTCAACGGAA
ACACGTTCGAGAACAAGCGGCTTCTCTATTTTCGGTATACTGAGGGAAGT
TGCATTTAGTCACAAGAAAACGCCTCCCAATGGCTTTCCTTTGAAACGGG
ACACTCTTTTCATCCTTCAAACGCCCGGTGCTCATACAAACGAGCTACTA
AATAAAGAACACAAGAAAAAACTCGCTACCTTCAGTACGTCTACAGCCAA
GACACCACAAGAAAATGTAAGCGAAAAACGCACCGCAACGACAAACGATT
TAAGCTCGAAAGATGCCCGCGACACAGCAACCAACAGCTTCAGCCTGAGA
CTCCGTGCTGTAGGCGTTGACGAGTTGATTTCGAACACCAGAGGTCGCGG
TCGTTGGCTGCTCGCTTGACCACAAGAAAATGTAAGCGAAAAACGCACCG
CAACGACAAACGATTTAAGCTCGAAAGATGCCCGCGACACAGCAACCAAC
AGCTTCAGCCTGAGACTCCGTGCTGTAGGCGTTGACGAGTTGATTTCGAA
CACCAGAGGTCGCGGTCGTTGGCTGCTCGCTTGA
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