mRNA_L-elsbetiae_contig15622.3938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15622.3938.1
Unique NamemRNA_L-elsbetiae_contig15622.3938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: D7G7C2_ECTSI (Rep_fac_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C2_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 2.040e-98
Identity = 152/163 (93.25%), Postives = 158/163 (96.93%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VVVLVGVDRLTKQAQAGLRRTME+YTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAP ESEVC VL+SVCRKESLTLPPALAARVAK S RNLRRAVLM+EACRVQQYPF+EDQEVQMTDWENYITQLARE+ LEQ+PRRLLEAREKLYELLTNCIPADIILK
Sbjct:  140 VVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPSESEVCSVLTSVCRKESLTLPPALAARVAKVSKRNLRRAVLMIEACRVQQYPFSEDQEVQMTDWENYITQLAREVVLEQSPRRLLEAREKLYELLTNCIPADIILK 302
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: A0A7S2SEJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEJ8_9STRA)

HSP 1 Score: 234 bits (598), Expect = 3.680e-74
Identity = 118/163 (72.39%), Postives = 140/163 (85.89%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VV+L+ VDRLT+QAQA LRRTMEKYTSSCRLIL C +PSKVIEPVRSRCLG+RV AP E EVCGVL++V RKE LT+PP LA R+AK S RN+RRA+LMLEA +VQQYPFT DQ VQ+ DWE YI  LA+EM  +Q+P++L++ARE LYELLTNCIPAD+I+K
Sbjct:  131 VVLLMEVDRLTRQAQAALRRTMEKYTSSCRLILYCTNPSKVIEPVRSRCLGIRVAAPTEDEVCGVLANVARKEKLTMPPELALRIAKLSGRNVRRALLMLEATKVQQYPFTVDQTVQLPDWELYIATLAQEMTTDQSPQKLIKAREMLYELLTNCIPADVIMK 293
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: A0A7S2XUU0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 8.680e-69
Identity = 109/162 (67.28%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:   10 LVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESL--TLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            ++ VDRL++QAQAGLRRTMEKY+SSCRL+L C SPSKVIEPVRSRCLG+RVPAP   E+C VL+ V RKE L   LPPALA R++ +S RNLRRA+LMLEACRVQ YPFTEDQ V + DWE +I  LA+++  EQ+P+ LL  REKLY+LL NCIP D+I+K
Sbjct:    1 MMEVDRLSRQAQAGLRRTMEKYSSSCRLVLCCTSPSKVIEPVRSRCLGIRVPAPSHEEICTVLNEVARKEHLGQNLPPALAQRLSMSSGRNLRRAILMLEACRVQTYPFTEDQTVPLPDWELFIASLAKDIINEQSPQMLLTCREKLYKLLINCIPPDVIIK 162
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: F0XVP2_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVP2_AURAN)

HSP 1 Score: 216 bits (551), Expect = 4.700e-67
Identity = 109/163 (66.87%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VV+LV VDRLT+QAQAGLRRTMEK TSSCRLIL C++PSKVI+P+RSRCLG+RV AP E+E+  VL  V  +E L LPPALAAR+AKAS RNLRRA+L LE C+VQQYPF   Q V + DWE Y+  +A ++  EQ+P+RLL  R+KLYELL+ CIPAD+ILK
Sbjct:  132 VVLLVEVDRLTRQAQAGLRRTMEKCTSSCRLILCCNNPSKVIDPLRSRCLGIRVAAPTEAEIVAVLDDVAARERLDLPPALAARIAKASKRNLRRAILSLEECKVQQYPFDAAQAVPLPDWEQYVVAIASDIAREQSPQRLLATRDKLYELLSKCIPADVILK 294
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: A0A7S4RK33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RK33_9STRA)

HSP 1 Score: 211 bits (536), Expect = 9.850e-67
Identity = 109/168 (64.88%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYP-----FTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VVVLV VDRL++QAQA LRRTMEKY++SCRLIL C++ SKVIEPVRSRCLG+RVPAP   ++C VL  V RKES+TLP  LA  +A+ S+RN+RRA+LMLE+C VQ+        + DQ VQ TDWE YI+QLA E+  EQ+P+RL+ AREKLYELL NCIPAD+I+K
Sbjct:   17 VVVLVEVDRLSRQAQAALRRTMEKYSASCRLILCCNNQSKVIEPVRSRCLGIRVPAPSHDDICSVLKKVSRKESITLPDELAVNIARESSRNMRRALLMLESCHVQRRDAHGNSLSADQPVQKTDWELYISQLASEITREQSPQRLMAAREKLYELLINCIPADVIIK 184
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: UPI00101A2291 (replication factor C subunit 3 n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101A2291)

HSP 1 Score: 211 bits (538), Expect = 7.810e-66
Identity = 108/163 (66.26%), Postives = 130/163 (79.75%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VV+L  VD+LT+ AQ  LRRTMEKY S+CRLIL C+S SKVI P+RSRCL VRVPAP   E+C VLS+VC+KE LTLP  LA R+A+ S RNLR+A+LM EACRVQQYPFTEDQEV  TDWE Y+ + A  +  +QTP+RLLE R +LYELLT+CIP +II+K
Sbjct:  130 VVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEEICHVLSTVCKKEGLTLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEVPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMK 292
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: A0A7S2PRB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRB1_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.040e-65
Identity = 112/163 (68.71%), Postives = 128/163 (78.53%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VVVL  VDRL+KQAQA LRRTMEKYTSSCRLIL C + SKVIEPVRSRCLG+RV AP   ++C VL  V RKE  TLP  LA  +A+ S RN+RRA+LMLEAC+VQQ   T DQ VQ TDWE YI+QLA +   EQ+P++LL AREKLYELL NCIPAD+ILK
Sbjct:  142 VVVLNEVDRLSKQAQASLRRTMEKYTSSCRLILCCANQSKVIEPVRSRCLGIRVAAPSHDDICRVLKLVSRKEQFTLPDELAINIARESGRNIRRAILMLEACKVQQNILTADQPVQKTDWELYISQLAMDCAREQSPQKLLAAREKLYELLINCIPADVILK 304
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: UPI001CF44FE1 (replication factor C subunit 3-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF44FE1)

HSP 1 Score: 213 bits (541), Expect = 1.600e-65
Identity = 107/163 (65.64%), Postives = 130/163 (79.75%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VVVL  VDRLTK AQ  LRRTMEKYT++CRLIL C+S SKVI  +RSRCLGVRV AP   E+C +L +VC+KE L++P  L+ R+A+ SNRNLRRA+LM EACRVQQYPFT DQ VQ  DWE Y+ + A+++  +QTP+RLLE R +LYELLT+CIP DIILK
Sbjct:  131 VVVLTEVDRLTKDAQHSLRRTMEKYTTTCRLILCCNSTSKVIPAIRSRCLGVRVAAPTAEEICQILHNVCKKEGLSIPAELSKRIAEKSNRNLRRALLMCEACRVQQYPFTPDQHVQEADWEIYLRETAQQIVEQQTPKRLLEIRSRLYELLTHCIPPDIILK 293
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: A0A452S0Q3_URSAM (Replication factor C subunit 3 n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452S0Q3_URSAM)

HSP 1 Score: 207 bits (526), Expect = 1.710e-65
Identity = 105/163 (64.42%), Postives = 128/163 (78.53%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VV+L  VD+LTK AQ  LRRTMEKY S+CRLIL C+S SKVI P+RSRCL VRVPAP   ++C VLS+VC+KE L LP  LA R+A+ S RNLR+A+LM EACRVQQYPFT DQE+  TDWE Y+ + A  +  +QTP+RLLE R +LYELLT+CIP +II+K
Sbjct:   21 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMK 183
[Close]
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Match: A0A835YV35_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV35_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.010e-65
Identity = 108/163 (66.26%), Postives = 131/163 (80.37%), Query Frame = 1 
Query:    1 VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLMLEACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYELLTNCIPADIILK 489
            VV+L GVD LTKQAQA LRRTMEKYTSSCRLIL C+S SKVI+PVRSRCL VRVPAP E E+ GVL +V RKE + LP  LAAR+++AS RNLRRA+LMLEAC+V+Q P   +Q V + DWE YI  LA+++  EQ+P+ L+ AR KLYELL NCIPAD++L+
Sbjct:  154 VVLLTGVDSLTKQAQAALRRTMEKYTSSCRLILCCNSISKVIDPVRSRCLSVRVPAPSEPEITGVLGAVARKEGVALPAELAARISRASGRNLRRALLMLEACKVEQSPLLANQRVALADWETYIESLAKDITQEQSPQALVAARGKLYELLVNCIPADVVLR 316
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15622.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C2_ECTSI2.040e-9893.25Rep_fac_C domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2SEJ8_9STRA3.680e-7472.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XUU0_9STRA8.680e-6967.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0XVP2_AURAN4.700e-6766.87AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S4RK33_9STRA9.850e-6764.88Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
UPI00101A22917.810e-6666.26replication factor C subunit 3 n=1 Tax=Eptesicus f... [more]
A0A7S2PRB1_9STRA1.040e-6568.71Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
UPI001CF44FE11.600e-6565.64replication factor C subunit 3-like n=3 Tax=Acropo... [more]
A0A452S0Q3_URSAM1.710e-6564.42Replication factor C subunit 3 n=1 Tax=Ursus ameri... [more]
A0A835YV35_9STRA2.010e-6566.26P-loop containing nucleoside triphosphate hydrolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15622contigL-elsbetiae_contig15622:335..3802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.1
Seed ortholog evalue2.5e-78
Seed eggNOG ortholog2880.D7G7C2
Preferred nameRFC3
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003689,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019985,GO:0022402,GO:0022616,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033170,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042221,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0046683,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG2035@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Ec32 ortholog descriptionReplication factor C small subunit
Ec32 orthologEc-04_003360.1
Exons5
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15622.3938.1prot_L-elsbetiae_contig15622.3938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15622 335..3802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.3844898-CDS-L-elsbetiae_contig15622:334..4041622815640.3844898-CDS-L-elsbetiae_contig15622:334..404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 335..404 -
1691683008.2493289-CDS-L-elsbetiae_contig15622:334..4041691683008.2493289-CDS-L-elsbetiae_contig15622:334..404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 335..404 -
1622815640.3988616-CDS-L-elsbetiae_contig15622:1171..12701622815640.3988616-CDS-L-elsbetiae_contig15622:1171..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 1172..1270 -
1691683008.270349-CDS-L-elsbetiae_contig15622:1171..12701691683008.270349-CDS-L-elsbetiae_contig15622:1171..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 1172..1270 -
1622815640.415228-CDS-L-elsbetiae_contig15622:1852..19891622815640.415228-CDS-L-elsbetiae_contig15622:1852..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 1853..1989 -
1691683008.2781308-CDS-L-elsbetiae_contig15622:1852..19891691683008.2781308-CDS-L-elsbetiae_contig15622:1852..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 1853..1989 -
1622815640.4280283-CDS-L-elsbetiae_contig15622:2956..30681622815640.4280283-CDS-L-elsbetiae_contig15622:2956..3068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 2957..3068 -
1691683008.285634-CDS-L-elsbetiae_contig15622:2956..30681691683008.285634-CDS-L-elsbetiae_contig15622:2956..3068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 2957..3068 -
1622815640.4390316-CDS-L-elsbetiae_contig15622:3731..38021622815640.4390316-CDS-L-elsbetiae_contig15622:3731..3802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 3732..3802 -
1691683008.293534-CDS-L-elsbetiae_contig15622:3731..38021691683008.293534-CDS-L-elsbetiae_contig15622:3731..3802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15622 3732..3802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15622.3938.1

>prot_L-elsbetiae_contig15622.3938.1 ID=prot_L-elsbetiae_contig15622.3938.1|Name=mRNA_L-elsbetiae_contig15622.3938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
VVVLVGVDRLTKQAQAGLRRTMEKYTSSCRLILLCHSPSKVIEPVRSRCL
GVRVPAPEESEVCGVLSSVCRKESLTLPPALAARVAKASNRNLRRAVLML
EACRVQQYPFTEDQEVQMTDWENYITQLAREMCLEQTPRRLLEAREKLYE
LLTNCIPADIILK
back to top

mRNA from alignment at L-elsbetiae_contig15622:335..3802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15622.3938.1 ID=mRNA_L-elsbetiae_contig15622.3938.1|Name=mRNA_L-elsbetiae_contig15622.3938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3468bp|location=Sequence derived from alignment at L-elsbetiae_contig15622:335..3802- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGGTGCTGGTTGGGGTGGACCGGCTCACCAAGCAGGCGCAGGCGGG
GCTGAGGCGAACTATGGAGAAGTGAGTTCGTGATTTTTTTCTCTTCTTCT
TCCTACTCTCCTCGTTTTTTTGTGTCTCGAGGCGGCCGGCACACACTTGG
AGGGATATTTACCCGTTTTACCCCGAGTACACCCTCTTGTGGCTTATGTT
TGTCGTTGCATCCCTCGGCCCCGCTGTTGGCTGCCGTTGTCATCGATCGT
CCTTTGTTGCTGTTGTTGATGCTGCTGCTATTATTGTTACCGTTGCTTCT
CTGCCTTTGCTGCTGCCGCCCTGTGTCTGCTGCTGCTGTTGTTGTTGTTG
CCGTTGCTCCTCTGCCTTTGCTGCTGCCGCTCTGTGTCTACTGCTGCTGC
TGCTGCCTCCGCCGCTGAAGGTTGACTTGACCCAATAGCCCGTTTGCCTT
TTACGTTACCCTCGTATTCGGACGACGCGCCTCTCCTTTGACCAACAAAC
CCGATGAAAGTAAACAATCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCC
CCCCACCACCACCNNNNNNNNNNTTTTCCTCCTCCCCTTCTTTCGGCGGC
CCCCCCCCCCCCTCTCCACAACCCCCCCTAAAAAAAAAACACCCCCCCCC
CCCCCCCCCCCCCCCAATCCTCCTCCCCAAACAGGTACACCTCGTCGTGC
CGGCTGATACTGCTGTGCCACAGCCCCAGCAAGGTCATAGAGCCGGTGCG
CTCCCGTTGCCTCGGGGTGCGCGTTCCCGCACCTGAAGAGTCGGAGGTAA
GAGGACAAGAGCAGCTCCAGGGAGAGCATCCCCCAGCCCCGGGGAAGCGC
TAGAATTGCTTGCCTTCCCCGCCCCTTGAGCGTGCTAGTTTTTTTAGGGA
AACGCCCCCCCCCCCCCCCCCCCGCCCACCCTCAATTATTTAAATACAAA
TTTTTCCCAAACCCCAAAAACAAACCCCCCCCCCCCAAAAACTCTTCGCT
TTNNNNNNNNNGGGGGGACCCCCCCCCCCCCCGGGGGGGGCGCAAGATTT
TCTCCCCCCCCCCCCCCCTGGGGGGGGTTTTTTTTTTTGGGAACCCCCCC
CCCCCCCCCCCCCCCCGGCCAACTCTAGATATTTTAGATACATATTGTAC
CAATACTCTAAAAGCAGACCTCCACCCCGAGAGACTGCTTCGTCTTTGCT
TTCGAAAGAAGGCCCCCCTCTCTCCGGGCCTATGTAATGCCTCAACAAAG
CCCACGACGCTCAATCCGAGAGGGGGACAAAATTAACGGGAGGGGGGGGG
GCGGGCGGGGGGGGTGCAGGTAGCGGTGTGACGTGCTGTGCTGTGCTGTA
CTGTGCTGTGCTGTGCTTTTCGGTGTGTGCCCCCGATGTTGGCTTCCGGC
ACCCTTAACGGCGTAGATAGATCGACCCAAAGGTGTGTGTGTGTGTGTGT
GCGTGCGTGTTTTCCCTCCCACTATTGGCTTATTCGTCGACTGCCCCACG
GGCCCCCTTCCTCCACTACGACTAGCTGGACAACCCAACCGGGGTCAGTC
GCATGCTGTACATATCTTTAGTTCTTCTCGGCTGCCCACACAGGCAATAG
TTACGTATTGTAGTCACAGCATGCGGGTTGCGGCGGGACTTCCGGAACTC
CTTCTTGTGTCTCTTACCCGCCCCTCCTGCCCGCGCCGCCCCTCCCCGCC
CTGCCCTGCCCCGGCCGACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCAGGTTTGCGGGGTGCTGTCGTCGGTGTGCAGGAAGGAGT
CGCTCACCCTGCCCCCAGCCCTGGCAGCGCGCGTGGCGAAGGCGTCCAAC
AGGAACCTCAGACGGGCGGTGCTCATGCTGGAGGCGTGCCGGGTGCAACA
GTGAGTGTTTTTGATGATGGTGACTAAATCTGAAGGGAGAACGCCTCTGC
AAGAAGGAAAACACGCGTATCGTATCGTGTCGTGTGTGCGTGCCGCCTTG
TTTATTTCCAGCGTTTACACCGCGCTGTCTTACCGGCTGCTGGCCAATAA
ATACACGCTGCTCTTCGCCGGCCGAGAAGTCTAAGGCAGGGCGCCCGGGG
GGGGTTATGAGGAGGGTTCGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTTCGTGGGTGATCGTCACACGCACA
GCTAGCTCGTGGCGTATTTGTGTTGGTTGAGTTTTCACTGCTGGGTGTTT
TTTTTCCGTGTCGGTGTTGGCTTTAGAGACACATATCAAAGATGGATGGG
TGTGCAAACGGGCCGGTTTCGGCGTTTCGGCGTATCAGAAATGAAGGATC
TATTTTTGCGTTTTTCCGGATAATATCTTCAGTTTATGATCGATATTTTA
CCCAACAGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTCTGCTCTGCTGTG
CTGTGCTCTGCTTTAAAAACCAAAACAAAAAGGTACCCGTTCACGGAGGA
CCAAGAGGTCCAGATGACGGACTGGGAGAACTACATCACGCAGCTCGCCA
GAGAGATGTGCTTGGAGCAGACCCCTCGCAGGTGGGGTAGGGCAGGGGCG
GCAGATCCCGCCTTCGACGCTCTGTGACAGTCTCTATGTGTAACTGCTGT
AACCGTCGCTAAACGCCGACACGACGATGCGGGCGTGGAGAACCGGGCTG
ACTTGAGTTCCTTCGCGCCCACTTTCCCACCCATATCATTTCTCCCTCTC
TCTGCACGTATATATGTGTGTGTGTGCGTGTGCTGCTTCGTGCGGTGCTT
CTGCGATGATGCCGTGCGTGACGCGCGGAATTTCAGGCGCCGGTCTGTTC
GTGTTTTTTTTACCTTTCGTTGTCTTTTTCGCGGTTGGTGTCCTGTCTAT
GTAGACTAAATAGGAGTATGTTTTTGTTTTGTTTTCCTCCCATTTTTGAC
ACATTTGTGTTTTGAGAGAGCGCGCGCACGTGCATGGCGTCTCGTGCCCC
ACTCTTGCCGGTAAGAATCCGCTTTACCGTTCCCCCGTCAGCGAACAAGC
CTTTCCTCGCGACCGAGAACGCCCGTAGCCGTAGCGCCGCGTGTGAGCAT
ATATATGTAGATATGCAGGTGCCCCCGAAGGGCGAAGGGAGGCAGCCTCT
TGGAAGCAGGAATCACATTCACATAAGGTCAAGCTTGTCTCATTTCCACG
CTCGTATCTTGGCGGTGCCCACTCCAACCCAACCCGACCCCCCCCCCTCC
CCCCCCCCCCCCCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGAAGAC
TACTCGAGGCGAGAGAAAAACTGTACGAGCTCCTGACAAACTGCATCCCG
GCGGACATAATCCTCAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15622:335..3802-

>mRNA_L-elsbetiae_contig15622.3938.1 ID=mRNA_L-elsbetiae_contig15622.3938.1|Name=mRNA_L-elsbetiae_contig15622.3938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig15622:335..3802- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGGTGCTGGTTGGGGTGGACCGGCTCACCAAGCAGGCGCAGGCGGG
GCTGAGGCGAACTATGGAGAAGTGGTGGTGCTGGTTGGGGTGGACCGGCT
CACCAAGCAGGCGCAGGCGGGGCTGAGGCGAACTATGGAGAAGTACACCT
CGTCGTGCCGGCTGATACTGCTGTGCCACAGCCCCAGCAAGGTCATAGAG
CCGGTGCGCTCCCGTTGCCTCGGGGTGCGCGTTCCCGCACCTGAAGAGTC
GGAGGTACACCTCGTCGTGCCGGCTGATACTGCTGTGCCACAGCCCCAGC
AAGGTCATAGAGCCGGTGCGCTCCCGTTGCCTCGGGGTGCGCGTTCCCGC
ACCTGAAGAGTCGGAGGTTTGCGGGGTGCTGTCGTCGGTGTGCAGGAAGG
AGTCGCTCACCCTGCCCCCAGCCCTGGCAGCGCGCGTGGCGAAGGCGTCC
AACAGGAACCTCAGACGGGCGGTGCTCATGCTGGAGGCGTGCCGGGTGCA
ACAGTTTGCGGGGTGCTGTCGTCGGTGTGCAGGAAGGAGTCGCTCACCCT
GCCCCCAGCCCTGGCAGCGCGCGTGGCGAAGGCGTCCAACAGGAACCTCA
GACGGGCGGTGCTCATGCTGGAGGCGTGCCGGGTGCAACAGTACCCGTTC
ACGGAGGACCAAGAGGTCCAGATGACGGACTGGGAGAACTACATCACGCA
GCTCGCCAGAGAGATGTGCTTGGAGCAGACCCCTCGCAGGTACCCGTTCA
CGGAGGACCAAGAGGTCCAGATGACGGACTGGGAGAACTACATCACGCAG
CTCGCCAGAGAGATGTGCTTGGAGCAGACCCCTCGCAGACTACTCGAGGC
GAGAGAAAAACTGTACGAGCTCCTGACAAACTGCATCCCGGCGGACATAA
TCCTCAAGACTACTCGAGGCGAGAGAAAAACTGTACGAGCTCCTGACAAA
CTGCATCCCGGCGGACATAATCCTCAAG
back to top