mRNA_L-elsbetiae_contig1562.3936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1562.3936.1
Unique NamemRNA_L-elsbetiae_contig1562.3936.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1562.3936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1562contigL-elsbetiae_contig1562:11270..12062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size793
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1562.3936.1prot_L-elsbetiae_contig1562.3936.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1562 11307..11747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.852898-UTR-L-elsbetiae_contig1562:11269..113061622815639.852898-UTR-L-elsbetiae_contig1562:11269..11306Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 11270..11306 +
1691683008.0010648-UTR-L-elsbetiae_contig1562:11269..113061691683008.0010648-UTR-L-elsbetiae_contig1562:11269..11306Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 11270..11306 +
1622815639.8805678-UTR-L-elsbetiae_contig1562:11747..120621622815639.8805678-UTR-L-elsbetiae_contig1562:11747..12062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 11748..12062 +
1691683008.0186527-UTR-L-elsbetiae_contig1562:11747..120621691683008.0186527-UTR-L-elsbetiae_contig1562:11747..12062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 11748..12062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.867041-CDS-L-elsbetiae_contig1562:11306..117471622815639.867041-CDS-L-elsbetiae_contig1562:11306..11747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 11307..11747 +
1691683008.0107164-CDS-L-elsbetiae_contig1562:11306..117471691683008.0107164-CDS-L-elsbetiae_contig1562:11306..11747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 11307..11747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1562.3936.1

>prot_L-elsbetiae_contig1562.3936.1 ID=prot_L-elsbetiae_contig1562.3936.1|Name=mRNA_L-elsbetiae_contig1562.3936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MVASTAFARLMEVTDRPLKSTLRMSAMLMSTRGSAFPASNSVRLPVRPSI
FSWSGCPPSLGPALWCNATQLVVAASISSRFALNASRLEGAQLVSRSFSR
LSSIISSRRICCSPPDDRLSRPASCTSSNSETRCGRGSVSARYILP*
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mRNA from alignment at L-elsbetiae_contig1562:11270..12062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1562.3936.1 ID=mRNA_L-elsbetiae_contig1562.3936.1|Name=mRNA_L-elsbetiae_contig1562.3936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=793bp|location=Sequence derived from alignment at L-elsbetiae_contig1562:11270..12062+ (Laminarionema elsbetiae ELsaHSoW15)
TGACGCCTCGCTATTGGTTTTTGTCGCGGGTTCACCCATGGTGGCCTCAA
CAGCGTTTGCTAGGCTCATGGAGGTGACAGATCGGCCGCTCAAATCTACC
CTCCGTATGTCGGCGATGCTGATGTCTACTCGCGGAAGTGCGTTCCCGGC
TTCGAACTCAGTACGGTTGCCTGTTCGGCCCTCCATTTTTTCTTGGTCCG
GATGTCCTCCATCGCTCGGCCCAGCTCTCTGGTGCAATGCAACACAGCTT
GTGGTGGCCGCTAGTATTTCTTCCCGTTTTGCACTGAATGCATCCAGGCT
AGAGGGCGCACAGCTCGTCTCTCGTTCGTTTTCCCGACTCAGCTCCATTA
TCTCCTCCCGCAGAATATGCTGCTCACCGCCCGACGACAGACTCTCCCGG
CCTGCCAGTTGTACCTCGTCGAACTCCGAGACTCGTTGTGGTCGAGGATC
TGTATCTGCGCGATACATTTTACCCTGATCAACAGCACGCTGTGTCGGCT
AGAGTAGTTCAAAATTTCTTTAGAAGGCTGCTATTTGACCCGCTTACCGT
GCACCAAACCTTCGCAACGGCACTGTAGGGTAGCTCTCTGGCAGCTCCGG
ATAAGGATTAGTCTCGATATGCCAAGTGACGGGCCCCACAAATCTCTTCG
AATGTCATCTAAGGCAACGCAGTGCGATCTGTGGCCTCATCACTCACGAA
TCAGCAGATACCAAATCTCTGTCCCACGCGATGTGTGTCAACTGCAGAAA
ATGTATTGAAGCTGAGAGGCTGCGTCCACAGAATGGCGAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1562:11270..12062+

>mRNA_L-elsbetiae_contig1562.3936.1 ID=mRNA_L-elsbetiae_contig1562.3936.1|Name=mRNA_L-elsbetiae_contig1562.3936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig1562:11270..12062+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCCTCAACAGCGTTTGCTAGGCTCATGGAGGTGACAGATCGGCC
GCTCAAATCTACCCTCCGTATGTCGGCGATGCTGATGTCTACTCGCGGAA
GTGCGTTCCCGGCTTCGAACTCAGTACGGTTGCCTGTTCGGCCCTCCATT
TTTTCTTGGTCCGGATGTCCTCCATCGCTCGGCCCAGCTCTCTGGTGCAA
TGCAACACAGCTTGTGGTGGCCGCTAGTATTTCTTCCCGTTTTGCACTGA
ATGCATCCAGGCTAGAGGGCGCACAGCTCGTCTCTCGTTCGTTTTCCCGA
CTCAGCTCCATTATCTCCTCCCGCAGAATATGCTGCTCACCGCCCGACGA
CAGACTCTCCCGGCCTGCCAGTTGTACCTCGTCGAACTCCGAGACTCGTT
GTGGTCGAGGATCTGTATCTGCGCGATACATTTTACCCTGAATGGTGGCC
TCAACAGCGTTTGCTAGGCTCATGGAGGTGACAGATCGGCCGCTCAAATC
TACCCTCCGTATGTCGGCGATGCTGATGTCTACTCGCGGAAGTGCGTTCC
CGGCTTCGAACTCAGTACGGTTGCCTGTTCGGCCCTCCATTTTTTCTTGG
TCCGGATGTCCTCCATCGCTCGGCCCAGCTCTCTGGTGCAATGCAACACA
GCTTGTGGTGGCCGCTAGTATTTCTTCCCGTTTTGCACTGAATGCATCCA
GGCTAGAGGGCGCACAGCTCGTCTCTCGTTCGTTTTCCCGACTCAGCTCC
ATTATCTCCTCCCGCAGAATATGCTGCTCACCGCCCGACGACAGACTCTC
CCGGCCTGCCAGTTGTACCTCGTCGAACTCCGAGACTCGTTGTGGTCGAG
GATCTGTATCTGCGCGATACATTTTACCCTGA
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