mRNA_L-elsbetiae_contig1562.3935.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1562.3935.1
Unique NamemRNA_L-elsbetiae_contig1562.3935.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1562.3935.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 3.650e-84
Identity = 139/223 (62.33%), Postives = 163/223 (73.09%), Query Frame = 1 
Query:    1 LLWSLAIRQCHLSSLIPVAGLLHHLDGLMGLEVHEVAGLALAGVERVLADGRCLSTVTIRKCGLTYLPRLQSGSIEVLDLSDNELNSASGLEMLFRLKELNLAGNNLSTLADLRPLISLGAGCLTELNLDRNPVQNIPSRYRESAAVMLPSIQRLDGVATARPWRARKTVDNSTGGNQG-----CTTPPRIRDKPVDGYLSDGAAWVRRRAGQGS-SRCNSKS 651
            LLWSL  RQC L SL+PVAGLLHHLDGL+GL +H + GL LAGVERVLAD RCL T+TIR C L  LPRLQSGSIEVLD+S+N + SA+GLE LFRLKELNLAGN + TL+ LRPL+ LG G L ELNLD NPVQN P RYRES   + PSIQ LDG+A ++ WR R     +T G +G     C+TPPR+R+   +GY SDGA W  RRAG    S C S++
Sbjct:    5 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVGEEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAGLAEYSTCGSET 226
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BLAST of mRNA_L-elsbetiae_contig1562.3935.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.280e-82
Identity = 137/223 (61.43%), Postives = 165/223 (73.99%), Query Frame = 1 
Query:    1 LLWSLAIRQCHLSSLIPVAGLLHHLDGLMGLEVHEVAGLALAGVERVLADGRCLSTVTIRKCGLTYLPRLQSGSIEVLDLSDNELNSASGLEMLFRLKELNLAGNNLSTLADLRPLISLGAGCLTELNLDRNPVQNIPSRYRESAAVMLPSIQRLDGVATARPWRARKTVDNSTGGNQG-----CTTPPRIRDKPVDGYLSDGAAWVRRRAG-QGSSRCNSKS 651
            LLWSL  RQC L SL+PVAGLLHHLDGL+GL +H   GLALAG+ERVLAD RCL T+TIR CGL  LPRLQSGSIEVLD S+N + SA+GLE LFRL+ELNLAGN + TL+DLRPL+ LG G L ELNL+ NPVQ+ P RYRES   + PSIQ LDG+A ++ WR R     +  G +G     C+TPPR+R+   +GY SDGA W  RRAG +  S+C S++
Sbjct:   89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAGEEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAGLKEYSKCGSEA 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1562.3935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G481_ECTSI3.650e-8462.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KR55_9PHAE1.280e-8261.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1562contigL-elsbetiae_contig1562:8219..11269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1187
Cds size1035
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1562.3935.1prot_L-elsbetiae_contig1562.3935.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1562 8287..11185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.9120169-UTR-L-elsbetiae_contig1562:8218..82861622815639.9120169-UTR-L-elsbetiae_contig1562:8218..8286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 8219..8286 -
1691683008.0276484-UTR-L-elsbetiae_contig1562:8218..82861691683008.0276484-UTR-L-elsbetiae_contig1562:8218..8286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 8219..8286 -
1622815640.0048172-UTR-L-elsbetiae_contig1562:11185..112691622815640.0048172-UTR-L-elsbetiae_contig1562:11185..11269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 11186..11269 -
1691683008.1183062-UTR-L-elsbetiae_contig1562:11185..112691691683008.1183062-UTR-L-elsbetiae_contig1562:11185..11269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1562 11186..11269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.926489-CDS-L-elsbetiae_contig1562:8286..84551622815639.926489-CDS-L-elsbetiae_contig1562:8286..8455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 8287..8455 -
1691683008.0385897-CDS-L-elsbetiae_contig1562:8286..84551691683008.0385897-CDS-L-elsbetiae_contig1562:8286..8455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 8287..8455 -
1622815639.9399197-CDS-L-elsbetiae_contig1562:8694..89321622815639.9399197-CDS-L-elsbetiae_contig1562:8694..8932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 8695..8932 -
1691683008.0489938-CDS-L-elsbetiae_contig1562:8694..89321691683008.0489938-CDS-L-elsbetiae_contig1562:8694..8932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 8695..8932 -
1622815639.9514048-CDS-L-elsbetiae_contig1562:9211..92601622815639.9514048-CDS-L-elsbetiae_contig1562:9211..9260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 9212..9260 -
1691683008.0591733-CDS-L-elsbetiae_contig1562:9211..92601691683008.0591733-CDS-L-elsbetiae_contig1562:9211..9260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 9212..9260 -
1622815639.9637666-CDS-L-elsbetiae_contig1562:10071..102131622815639.9637666-CDS-L-elsbetiae_contig1562:10071..10213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 10072..10213 -
1691683008.0697548-CDS-L-elsbetiae_contig1562:10071..102131691683008.0697548-CDS-L-elsbetiae_contig1562:10071..10213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 10072..10213 -
1622815639.9754262-CDS-L-elsbetiae_contig1562:10573..106781622815639.9754262-CDS-L-elsbetiae_contig1562:10573..10678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 10574..10678 -
1691683008.0885403-CDS-L-elsbetiae_contig1562:10573..106781691683008.0885403-CDS-L-elsbetiae_contig1562:10573..10678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 10574..10678 -
1622815639.9916117-CDS-L-elsbetiae_contig1562:10853..111851622815639.9916117-CDS-L-elsbetiae_contig1562:10853..11185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 10854..11185 -
1691683008.1067486-CDS-L-elsbetiae_contig1562:10853..111851691683008.1067486-CDS-L-elsbetiae_contig1562:10853..11185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1562 10854..11185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1562.3935.1

>prot_L-elsbetiae_contig1562.3935.1 ID=prot_L-elsbetiae_contig1562.3935.1|Name=mRNA_L-elsbetiae_contig1562.3935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MGLEVHEVAGLALAGVERVLADGRCLSTVTIRKCGLTYLPRLQSGSIEVL
DLSDNELNSASGLEMLFRLKELNLAGNNLSTLADLRPLISLGAGCLTELN
LDRNPVQNIPSRYRESAAVMLPSIQRLDGVATARPWRARKTVDNSTGGNQ
GCTTPPRIRDKPVDGYLSDGAAWVRRRAGQGSSRCNSKSRAERQDVGDKH
GFVRGLAGLGLIWGGTPTPRTSRSVCSSPDGATILRGGSDSAALFGNSLD
GGFGELERSGGLVSATRSSKRCRPPSPARCRQMEADNARSRPRDTPKPRA
HWDTRFRHHHHQELVARTFAKKRAAELSRHTQTAIMDRLAQPVR*
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mRNA from alignment at L-elsbetiae_contig1562:8219..11269-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1562.3935.1 ID=mRNA_L-elsbetiae_contig1562.3935.1|Name=mRNA_L-elsbetiae_contig1562.3935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3051bp|location=Sequence derived from alignment at L-elsbetiae_contig1562:8219..11269- (Laminarionema elsbetiae ELsaHSoW15)
CTGTTGTGGTCTTTGGCCATTCGGCAGTGCCACTTATCCTCACTTATTCC
AGTCGCTGGGCTGCTGCACCATTTAGACGGCCTAATGGGCCTGGAAGTTC
ACGAGGTAGCTGGGCTCGCGCTTGCGGGGGTGGAACGCGTGTTGGCCGAC
GGACGGTGCCTGAGCACAGTCACAATTCGTAAGTGTGGTCTGACATATCT
ACCTCGTCTCCAGAGCGGATCGATCGAGGTTCTTGACTTAAGCGACAACG
AGCTTAACAGTGCCAGCGGGCTGGAGATGCTATTTCGCCTCAAAGAGCTG
AATCTCGCAGGGAACAACCTAAGCACGCTGGCAGATCTGAGGCCCTTGAT
TTCGCTGGGAGCTGGTTGTCTTACGGAGTTAAACTTGGACAGGAACCCCG
TTCAAAATATCCCAAGGTATGTACAAGCATCAAAACATCAAAACATCCCA
AGGTTGTCGTATGCTGATCCACGAGGTAGGCCCACACATTAAATATTTCC
ACTGTCTTCACATGCTCATTCTCAAGTCTGTACTGCGGTCCGAACGGCAG
CATACGTGTTAGGCAACACGATATGCTGCTTCTTCTCTGAGCAGGTATAG
AGAATCGGCGGCGGTGATGCTCCCGTCCATCCAACGTCTTGACGGGGTCG
CCACGGCTCGGCCTTGGCGGGCTAGAAAGACCGTGGACAATTCCACGTGA
GAGCACCGCCCCTCAGCAAAGAATTTTAACTTCATATATGACACCTCTTT
GATGAGGGGTATAGCCAGTGTTAGCGTGCGAAGCGCACTACTGTAGCCTA
GTGTTCTTGTAGCGTTCACTCCACGAGCTGTCTCCGATATGGTGATGTTA
CACTCGAAAGTATTCGGTGCCACCGTTTGTAACATCGCGTAACCACTGGT
GCTGGAGAGGGGGCGGCCCATCTGTATTTCGAGTGCAAGAAAGGGAGGGG
GTAGGGATCCCTCTTGGTATTTGGAGTATAGCAATTCGGCGGATTGACGA
AAACATCCCACAACACGCCATCCCATTCGACACAACCACGTGTAACCAAC
ATTCAGGGGGGGTAATCAAGGTTGCACTACACCACCAAGGATCAGGGATA
AGCCTGTCGACGGATATTTGAGCGATGGTGCGGCTTGGGTGCGGAGGCGA
GCAGGGCAAGGAAGTTCGAGATGCAATTCGAAGTCTCGCGCAGAACGGGT
GAGCTTTTCGTGAGTTGATCAAGAAAGCAACGCTATCAGTATCGTACGGA
TAGTGGGAGGCCGCCCATAGGTGCTCGACCGGTACAATGTTTTGTGTGTA
TTTGAGGTGTACGGTCTTTGTCCTTTTCGCGTGTGCATGATCTTGAGACA
TCTTGCGACCTCTCAACTTAGCGCTTTCGATTGGTATTTTCATCATTATA
ACGTCGGCCTTTATAGACCAAGCTGCCTTGGGAGGGCACCTTTCTCTGCC
GTGTTAACCGTTGCCAAAATAGGAGATATACATGCAATGCCAGTATCAAC
ACGATCGGAAATCTCACATCACCGTGTCGCCCGGGTGATTATGTTGCGTT
CTGCACGTGCCGACGAACGCTCCTCGTCCCAGTTTGCCTGGGGGAGTGTC
ATGAACGAAACGTTTTTGTGCCAGTTTGCCAGGGAATATGCCGTACATCA
TGCTCCATGTCTGGTTTGTGCGCTCTATCTTGACGACTTGACGACATCTT
CACTCTGCAAACATGAAACACTCCTTTTACCAATCCCACCAACAATAATA
TCAGTGCAGTGCAGCCCCACGTTTTTTCTGGTGTAGAGACGAGACTCAGG
CCTGCTTAGGGTGAAGTTTTTTTGTATCTAGTCTATATGTTGATGTTCAA
CACATTCAGCAACCGGATCGATAACTCCAAATATATACTCCAGCCGAAAT
CCTCAAAACTCACAGGTGAACAGTTAAAATGTGCTTAGCTGTCCAATTGG
CCTGCTCTGACTGACGTCGTGCTGTTCGGGTGGTGACTTGTTTGTTTGGT
TTGTTGCAGCAAGATGTCGGTGACAAGCACGGGTTCGTGCGGGGTCTAGC
AGGCTTAGGTGAGAACGCTTCGCACACATTGCTTCCTATAGGTGCTCCTG
AAAGAGAGGTTTGACGCATGCCTCGTTCAAATAATCCTAAAATATCATGC
TCCATTTGTGTGAGTACTTACTTCTCTCCCACACCCTACAACATCCCTTA
TCGAAAAATGGGTTTCCTTCGATAATTGCACACCTGCCAGTGTTAACAAC
ATATTTCGGCTGGAATGCACGCATAAGGTCCACAAGGTTCTCTTCAAGCA
CTTAACTCGCTTCCCACCGTATTGTCAACTCTGCAAGGGCTGATCTGGGG
TGGGACACCAACGCCTCGTACCTCCCGAAGCGTGTGTTCATCGCCGGATG
GAGCTACGATCCTACGAGGCGGGAGTGACAGTGCCGCCTTGTTCGGAAAT
AGTTTGGACGGTGGTTTTGGCGAGTTGGAGCGATCGGGAGGATTGGTGAG
CGCAACCCGATCATCGAAGAGGTGCCGTCCACCTTCTCCGGCGCGATGCC
GCCAAATGGAGGCTGACAACGCCAGGTAAGATACATTATTTTTCTCAGGA
TTCTCGGGATTTTGGAGCTTGCCTTTGAAACGATCGTTGAAACTCCTTCC
TCAAAAACCGAAGGTTTGCTCTGTTCACCAAGCCGTGCACATTGGAAAGA
TGGACTGGAGATACTTCTGCGGGGTGGAATTAAATTACTTGCTAAATGTA
TGCTTGTCACAATGGGAGTCACCGGGCAAAACTTCGTCTACACATGGATT
TCTTGTCAAAAAAGATCAAGACCAAGAGACACGCCGAAACCAAGAGCCCA
CTGGGACACACGTTTTCGACACCATCACCACCAGGAGTTAGTCGCCAGAA
CATTCGCGAAAAAACGAGCAGCTGAGTTGTCTCGACATACGCAGACAGCA
ATCATGGACCGGCTGGCCCAGCCTGTGCGGTAAGAGGAATCCCATCTACG
TTCCTGAGTAGGTTAGATATCGCATCTTACGACGGAAGAGCAGGGGCGAA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1562:8219..11269-

>mRNA_L-elsbetiae_contig1562.3935.1 ID=mRNA_L-elsbetiae_contig1562.3935.1|Name=mRNA_L-elsbetiae_contig1562.3935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2070bp|location=Sequence derived from alignment at L-elsbetiae_contig1562:8219..11269- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCTGGAAGTTCACGAGGTAGCTGGGCTCGCGCTTGCGGGGGTGGA
ACGCGTGTTGGCCGACGGACGGTGCCTGAGCACAGTCACAATTCGTAAGT
GTGGTCTGACATATCTACCTCGTCTCCAGAGCGGATCGATCGAGGTTCTT
GACTTAAGCGACAACGAGCTTAACAGTGCCAGCGGGCTGGAGATGCTATT
TCGCCTCAAAGAGCTGAATCTCGCAGGGAACAACCTAAGCACGCTGGCAG
ATCTGAGGCCCTTGATTTCGCTGGGAGCTGGTTGTCTTACGGAGTTAAAC
TTGGACAGGAACCCCGTTCAAAATATCCCAAGATGGGCCTGGAAGTTCAC
GAGGTAGCTGGGCTCGCGCTTGCGGGGGTGGAACGCGTGTTGGCCGACGG
ACGGTGCCTGAGCACAGTCACAATTCGTAAGTGTGGTCTGACATATCTAC
CTCGTCTCCAGAGCGGATCGATCGAGGTTCTTGACTTAAGCGACAACGAG
CTTAACAGTGCCAGCGGGCTGGAGATGCTATTTCGCCTCAAAGAGCTGAA
TCTCGCAGGGAACAACCTAAGCACGCTGGCAGATCTGAGGCCCTTGATTT
CGCTGGGAGCTGGTTGTCTTACGGAGTTAAACTTGGACAGGAACCCCGTT
CAAAATATCCCAAGCAGGTATAGAGAATCGGCGGCGGTGATGCTCCCGTC
CATCCAACGTCTTGACGGGGTCGCCACGGCTCGGCCTTGGCGGGCTAGAA
AGACCGTGGACAATTCCACCAGGTATAGAGAATCGGCGGCGGTGATGCTC
CCGTCCATCCAACGTCTTGACGGGGTCGCCACGGCTCGGCCTTGGCGGGC
TAGAAAGACCGTGGACAATTCCACGGGGGGTAATCAAGGTTGCACTACAC
CACCAAGGATCAGGGATAAGCCTGTCGACGGATATTTGAGCGATGGTGCG
GCTTGGGTGCGGAGGCGAGCAGGGCAAGGAAGTTCGAGATGCAATTCGAA
GTCTCGCGCAGAACGGGGGGGGTAATCAAGGTTGCACTACACCACCAAGG
ATCAGGGATAAGCCTGTCGACGGATATTTGAGCGATGGTGCGGCTTGGGT
GCGGAGGCGAGCAGGGCAAGGAAGTTCGAGATGCAATTCGAAGTCTCGCG
CAGAACGGCAAGATGTCGGTGACAAGCACGGGTTCGTGCGGGGTCTAGCA
GGCTTAGCAAGATGTCGGTGACAAGCACGGGTTCGTGCGGGGTCTAGCAG
GCTTAGGGCTGATCTGGGGTGGGACACCAACGCCTCGTACCTCCCGAAGC
GTGTGTTCATCGCCGGATGGAGCTACGATCCTACGAGGCGGGAGTGACAG
TGCCGCCTTGTTCGGAAATAGTTTGGACGGTGGTTTTGGCGAGTTGGAGC
GATCGGGAGGATTGGTGAGCGCAACCCGATCATCGAAGAGGTGCCGTCCA
CCTTCTCCGGCGCGATGCCGCCAAATGGAGGCTGACAACGCCAGGGCTGA
TCTGGGGTGGGACACCAACGCCTCGTACCTCCCGAAGCGTGTGTTCATCG
CCGGATGGAGCTACGATCCTACGAGGCGGGAGTGACAGTGCCGCCTTGTT
CGGAAATAGTTTGGACGGTGGTTTTGGCGAGTTGGAGCGATCGGGAGGAT
TGGTGAGCGCAACCCGATCATCGAAGAGGTGCCGTCCACCTTCTCCGGCG
CGATGCCGCCAAATGGAGGCTGACAACGCCAGATCAAGACCAAGAGACAC
GCCGAAACCAAGAGCCCACTGGGACACACGTTTTCGACACCATCACCACC
AGGAGTTAGTCGCCAGAACATTCGCGAAAAAACGAGCAGCTGAGTTGTCT
CGACATACGCAGACAGCAATCATGGACCGGCTGGCCCAGCCTGTGCGGTA
AATCAAGACCAAGAGACACGCCGAAACCAAGAGCCCACTGGGACACACGT
TTTCGACACCATCACCACCAGGAGTTAGTCGCCAGAACATTCGCGAAAAA
ACGAGCAGCTGAGTTGTCTCGACATACGCAGACAGCAATCATGGACCGGC
TGGCCCAGCCTGTGCGGTAA
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