mRNA_L-elsbetiae_contig15616.3934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15616.3934.1
Unique NamemRNA_L-elsbetiae_contig15616.3934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15616.3934.1 vs. uniprot
Match: A0A6H5JFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN5_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.280e-47
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 1 
Query:    1 KTLDSRLTLREACRICATVSGFVAIIA----------KGGDRAGKAMHPSRQDRDFGVSRQIQEEEALLAVGDDSMGPEEFARAVYHCGDLKTWDGMCPVSQRVELFVVHDLFERFLQKTGEASVWWTRD 360
            + LDSRLTL EACRIC  V+GFVAI            + G+  G + HP  +++          EEALL++GDDSM PE+F+RAV+HCGDLKTWDG+CPVSQRV  FVVHDL+ERFL++TGEAS+WWTRD
Sbjct:   16 QALDSRLTLHEACRICTAVTGFVAIACPARQQATTRRRRGEENGLSGHPEGEEKG---------EEALLSIGDDSMDPEQFSRAVFHCGDLKTWDGLCPVSQRVGRFVVHDLYERFLERTGEASLWWTRD 136
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BLAST of mRNA_L-elsbetiae_contig15616.3934.1 vs. uniprot
Match: D8LDA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA4_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.760e-45
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 1 
Query:    1 KTLDSRLTLREACRICATVSGFVAIIA----------KGGDRAGKAMHPSRQDRDFGVSRQIQEEEALLAVGDDSMGPEEFARAVYHCGDLKTWDGMCPVSQRVELFVVHDLFERFLQKTGEASVWWTRD 360
            + LDSRLTLREACRICA V+GFVAI            + G+  G + HP  +++         EEEALL++GDDSMGPEEF+RAV+HCGDLKT DG+CPVSQRV LFVVHDL+ERFL++TGEAS+WWTRD
Sbjct:  516 EALDSRLTLREACRICAAVTGFVAIACPARQQATTRRRRGEENGLSGHPEGEEK---------EEEALLSIGDDSMGPEEFSRAVFHCGDLKTRDGLCPVSQRVGLFVVHDLYERFLERTGEASLWWTRD 636
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15616.3934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFN5_9PHAE1.280e-4758.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDA4_ECTSI1.760e-4562.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15616contigL-elsbetiae_contig15616:467..1236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.789391-CDS-L-elsbetiae_contig15616:466..5591622815639.789391-CDS-L-elsbetiae_contig15616:466..559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15616 467..559 -
1691683007.9808998-CDS-L-elsbetiae_contig15616:466..5591691683007.9808998-CDS-L-elsbetiae_contig15616:466..559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15616 467..559 -
1622815639.8065279-CDS-L-elsbetiae_contig15616:960..12361622815639.8065279-CDS-L-elsbetiae_contig15616:960..1236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15616 961..1236 -
1691683007.991428-CDS-L-elsbetiae_contig15616:960..12361691683007.991428-CDS-L-elsbetiae_contig15616:960..1236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15616 961..1236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15616.3934.1prot_L-elsbetiae_contig15616.3934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15616 467..1236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15616.3934.1

>prot_L-elsbetiae_contig15616.3934.1 ID=prot_L-elsbetiae_contig15616.3934.1|Name=mRNA_L-elsbetiae_contig15616.3934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
KTLDSRLTLREACRICATVSGFVAIIAKGGDRAGKAMHPSRQDRDFGVSR
QIQEEEALLAVGDDSMGPEEFARAVYHCGDLKTWDGMCPVSQRVELFVVH
DLFERFLQKTGEASVWWTRDRE*
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mRNA from alignment at L-elsbetiae_contig15616:467..1236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15616.3934.1 ID=mRNA_L-elsbetiae_contig15616.3934.1|Name=mRNA_L-elsbetiae_contig15616.3934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=770bp|location=Sequence derived from alignment at L-elsbetiae_contig15616:467..1236- (Laminarionema elsbetiae ELsaHSoW15)
AAGACCCTGGATTCACGCCTCACCCTCCGAGAGGCATGCAGAATTTGTGC
AACAGTATCGGGCTTCGTGGCGATCATAGCGAAGGGAGGAGATCGTGCAG
GGAAAGCAATGCATCCATCACGGCAAGACCGAGATTTCGGGGTTTCCCGT
CAAATCCAGGAAGAAGAGGCGTTGCTGGCTGTTGGGGACGACTCCATGGG
ACCCGAGGAGTTTGCGCGAGCGGTATACCATTGTGGTGATCTCAAGACGT
GGGACGGCATGTGCCCTGTTTCTCAGGTGTATTTCTATAGATATAGCTCT
ATTTAGTGCAAGAAAGTTATTTGAGGAGCCTATTGAGCACACCATCATGC
TGTGGCGCACCTGGCCAAAGCTTCAAACAAGCTCTACGTACATAACTGCA
ATTGGAACATCTAGGACACCTCGAAAGGTCACTGGTGGTGATGTGTTTGG
ATCGCAAAACCCTGCGCATTTTTTTGTGAAGTGCGGGTCAGATCGGTCGT
CAACGAAGGCACAGAGTATAGCGCGTGCTACTGTATCCCCCCCTGCTGCA
ACTTCTGTGTGAACCTCTTGTACTTATTTTCCACCTCGCCCCTTCCTCTT
GTCCGTTTCCTCCCTGCCATGATCGTCGCCGTCCGGGACCAAACGGCGAT
CGGTCACCGAAACAACCAACAAATCAGCGAGTCGAGTTGTTTGTCGTGCA
CGATCTGTTCGAACGGTTCCTGCAAAAGACGGGCGAGGCTTCTGTGTGGT
GGACCCGGGACAGAGAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15616:467..1236-

>mRNA_L-elsbetiae_contig15616.3934.1 ID=mRNA_L-elsbetiae_contig15616.3934.1|Name=mRNA_L-elsbetiae_contig15616.3934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig15616:467..1236- (Laminarionema elsbetiae ELsaHSoW15)
AAGACCCTGGATTCACGCCTCACCCTCCGAGAGGCATGCAGAATTTGTGC
AACAGTATCGGGCTTCGTGGCGATCATAGCGAAGGGAGGAGATCGTGCAG
GGAAAGCAATGCATCCATCACGGCAAGACCGAGATTTCGGGGTTTCCCGT
CAAATCCAGGAAGAAGAGGCGTTGCTGGCTGTTGGGGACGACTCCATGGG
ACCCGAGGAGTTTGCGCGAGCGGTATACCATTGTGGTGATCTCAAGACGT
GGGACGGCATGTGCCCTGTTTCTCAGAAGACCCTGGATTCACGCCTCACC
CTCCGAGAGGCATGCAGAATTTGTGCAACAGTATCGGGCTTCGTGGCGAT
CATAGCGAAGGGAGGAGATCGTGCAGGGAAAGCAATGCATCCATCACGGC
AAGACCGAGATTTCGGGGTTTCCCGTCAAATCCAGGAAGAAGAGGCGTTG
CTGGCTGTTGGGGACGACTCCATGGGACCCGAGGAGTTTGCGCGAGCGGT
ATACCATTGTGGTGATCTCAAGACGTGGGACGGCATGTGCCCTGTTTCTC
AGCGAGTCGAGTTGTTTGTCGTGCACGATCTGTTCGAACGGTTCCTGCAA
AAGACGGGCGAGGCTTCTGTGTGGTGGACCCGGGACAGAGAATAGCGAGT
CGAGTTGTTTGTCGTGCACGATCTGTTCGAACGGTTCCTGCAAAAGACGG
GCGAGGCTTCTGTGTGGTGGACCCGGGACAGAGAATAG
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