mRNA_L-elsbetiae_contig15611.3932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15611.3932.1
Unique NamemRNA_L-elsbetiae_contig15611.3932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15611.3932.1 vs. uniprot
Match: A0A6H5L9L5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.870e-29
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 2 
Query:  428 SSSGANSPFAVSDFLFREDLYSLGYVFLELVFGAFCESKSKRPDQNALKRLLEDIFKGDFKAFK 619
            SSSGA SPFAVSDFLFREDLYSLGYVFLELVFGAFC+ KSKRPDQN+LKRLLEDIFKGDFKAFK
Sbjct:  318 SSSGATSPFAVSDFLFREDLYSLGYVFLELVFGAFCDDKSKRPDQNSLKRLLEDIFKGDFKAFK 381
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BLAST of mRNA_L-elsbetiae_contig15611.3932.1 vs. uniprot
Match: A0A7S3ECV9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECV9_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 5.590e-6
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  434 SGANSPFAVSDFLFREDLYSLGYVFLELVFGAFCES-KSKRPDQNALKRLLEDIF 595
            SGA+SP  VS + F +D+Y+LGY F+E++FG+  ES    +  Q A KRL ED++
Sbjct:  286 SGASSPTEVSRYFFADDIYALGYAFMEIIFGSLSESGPGPQTTQEAFKRLFEDVY 340
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BLAST of mRNA_L-elsbetiae_contig15611.3932.1 vs. uniprot
Match: A0A2V3IFG9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFG9_9FLOR)

HSP 1 Score: 51.2 bits (121), Expect = 8.650e-5
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:  434 SGANSPFAVSDFLFREDLYSLGYVFLELVFGAFCESKSKRPDQNALKRLLEDIFKGDFKAFK 619
            +GA +P  ++ F F ED+Y+LGY FLEL+F +F         Q+  K+L ED FK D  AF+
Sbjct:   41 AGAVTPATIAAFHFAEDIYALGYSFLELIFSSF---SGVPVPQDRFKKLFEDTFKLDVNAFR 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15611.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L9L5_9PHAE1.870e-2993.75Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S3ECV9_9RHOD5.590e-647.27Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IFG9_9FLOR8.650e-543.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15611contigL-elsbetiae_contig15611:2597..3215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.4e-25
Seed eggNOG ortholog2880.D8LSY5
Hectar predicted targeting categoryother localisation
EggNOG OGs28J07@1,2QRC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-26_001880.1
Exons1
Model size619
Cds size288
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.661624-UTR-L-elsbetiae_contig15611:2596..29271622815639.661624-UTR-L-elsbetiae_contig15611:2596..2927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15611 2597..2927 +
1691683007.9172168-UTR-L-elsbetiae_contig15611:2596..29271691683007.9172168-UTR-L-elsbetiae_contig15611:2596..2927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15611 2597..2927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.6787639-CDS-L-elsbetiae_contig15611:2927..32151622815639.6787639-CDS-L-elsbetiae_contig15611:2927..3215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15611 2928..3215 +
1691683007.9297824-CDS-L-elsbetiae_contig15611:2927..32151691683007.9297824-CDS-L-elsbetiae_contig15611:2927..3215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15611 2928..3215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15611.3932.1prot_L-elsbetiae_contig15611.3932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15611 2928..3215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15611.3932.1

>prot_L-elsbetiae_contig15611.3932.1 ID=prot_L-elsbetiae_contig15611.3932.1|Name=mRNA_L-elsbetiae_contig15611.3932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MSSVVTATANCHRPPPRNPPTTLSTAAAATRASSSGANSPFAVSDFLFRE
DLYSLGYVFLELVFGAFCESKSKRPDQNALKRLLEDIFKGDFKAFK
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mRNA from alignment at L-elsbetiae_contig15611:2597..3215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15611.3932.1 ID=mRNA_L-elsbetiae_contig15611.3932.1|Name=mRNA_L-elsbetiae_contig15611.3932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig15611:2597..3215+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTGCTTGCAGTCAGTGGCGAAGAGTTAGTTGGGCATTGACGAACGGAT
AGTGCAAGCTTGCCAGCTTATAGCTGTCCCCCCGAGCCTCCGCAACGACG
GCCCTAGATGAGATGCCAACTGTTGTGTCTTGAGAGAGTTTTTTTCAATA
ATTATCCTCGAAGATTTACAAACAAACAAAAAAATCTCTGTCCTTCCCCC
TCCCCACGCTCTCCACCCCAAACGCCCGGGAGTTTGTCCCTTTTGCACCC
AAACGCCCGGGAGTTTGTCCTTTTTGCTGCCGCCAGTAACAATATACTTC
GAAGTATAATATATAGTCCATCTCTGTCGAAATGTCATCCGTAGTAACCG
CCACCGCGAACTGCCACCGCCCCCCTCCCCGGAACCCTCCAACAACACTA
TCCACCGCCGCCGCCGCAACAAGGGCGAGCTCGTCGGGTGCAAACTCGCC
GTTCGCCGTGTCCGACTTCCTGTTCCGGGAGGACTTGTACTCCCTGGGAT
ACGTCTTCCTCGAGCTCGTGTTCGGGGCCTTCTGCGAGTCCAAGTCCAAG
CGCCCCGATCAGAACGCGCTGAAGCGCCTCCTCGAGGACATCTTCAAGGG
AGACTTCAAGGCCTTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15611:2597..3215+

>mRNA_L-elsbetiae_contig15611.3932.1 ID=mRNA_L-elsbetiae_contig15611.3932.1|Name=mRNA_L-elsbetiae_contig15611.3932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig15611:2597..3215+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCATCCGTAGTAACCGCCACCGCGAACTGCCACCGCCCCCCTCCCCG
GAACCCTCCAACAACACTATCCACCGCCGCCGCCGCAACAAGGGCGAGCT
CGTCGGGTGCAAACTCGCCGTTCGCCGTGTCCGACTTCCTGTTCCGGGAG
GACTTGTACTCCCTGGGATACGTCTTCCTCGAGCTCGTGTTCGGGGCCTT
CTGCGAGTCCAAGTCCAAGCGCCCCGATCAGAACGCGCTGAAGCGCCTCC
TCGAGGACATCTTCAAGGGAGACTTCAAGGCCTTCAAGATGTCATCCGTA
GTAACCGCCACCGCGAACTGCCACCGCCCCCCTCCCCGGAACCCTCCAAC
AACACTATCCACCGCCGCCGCCGCAACAAGGGCGAGCTCGTCGGGTGCAA
ACTCGCCGTTCGCCGTGTCCGACTTCCTGTTCCGGGAGGACTTGTACTCC
CTGGGATACGTCTTCCTCGAGCTCGTGTTCGGGGCCTTCTGCGAGTCCAA
GTCCAAGCGCCCCGATCAGAACGCGCTGAAGCGCCTCCTCGAGGACATCT
TCAAGGGAGACTTCAAGGCCTTCAAG
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