mRNA_L-elsbetiae_contig1560.3929.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1560.3929.1
Unique NamemRNA_L-elsbetiae_contig1560.3929.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1560.3929.1 vs. uniprot
Match: D7FWS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.320e-43
Identity = 80/120 (66.67%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:   22 HRIAFIEADKRRRAARRARDFETSKKAQAEKGRPRRDANIALLQGLLDVVLELEPWDPTRHVSKVGVAWAECGRRVPGYLKGGGRAEPRQLVQLQVTRMGCQLLDPTAKPPWESYTEVVR 381
            HR+  IEADKRRRAAR+A+  E S+KA+AE  RPRRD  +ALL  LLD VLE+EPW+  RH +KV  AW ECGRRVPGYLK G R EPR LVQ QV R+G QL+DPTAK PW+SY EV R
Sbjct:   15 HRV--IEADKRRRAARKAKGLEASRKARAEMRRPRRDEKMALLLRLLDAVLEVEPWNLARH-TKVSEAWEECGRRVPGYLKEGARTEPRLLVQQQVFRLGDQLIDPTAKTPWKSYPEVKR 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1560.3929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWS8_ECTSI2.320e-4366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1560contigL-elsbetiae_contig1560:18662..21447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_004250.1
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.440183-CDS-L-elsbetiae_contig1560:18661..188291622815639.440183-CDS-L-elsbetiae_contig1560:18661..18829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1560 18662..18829 +
1691683007.7821045-CDS-L-elsbetiae_contig1560:18661..188291691683007.7821045-CDS-L-elsbetiae_contig1560:18661..18829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1560 18662..18829 +
1622815639.4512107-CDS-L-elsbetiae_contig1560:21234..214471622815639.4512107-CDS-L-elsbetiae_contig1560:21234..21447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1560 21235..21447 +
1691683007.7968965-CDS-L-elsbetiae_contig1560:21234..214471691683007.7968965-CDS-L-elsbetiae_contig1560:21234..21447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1560 21235..21447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1560.3929.1prot_L-elsbetiae_contig1560.3929.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1560 18662..21447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1560.3929.1

>prot_L-elsbetiae_contig1560.3929.1 ID=prot_L-elsbetiae_contig1560.3929.1|Name=mRNA_L-elsbetiae_contig1560.3929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
RHRRRQGHRIAFIEADKRRRAARRARDFETSKKAQAEKGRPRRDANIALL
QGLLDVVLELEPWDPTRHVSKVGVAWAECGRRVPGYLKGGGRAEPRQLVQ
LQVTRMGCQLLDPTAKPPWESYTEVVR
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mRNA from alignment at L-elsbetiae_contig1560:18662..21447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1560.3929.1 ID=mRNA_L-elsbetiae_contig1560.3929.1|Name=mRNA_L-elsbetiae_contig1560.3929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2786bp|location=Sequence derived from alignment at L-elsbetiae_contig1560:18662..21447+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCATCGACGACGCCAGGGACATCGAATAGCCTTCATCGAAGCTGACAA
GCGCCGCCGCGCCGCCAGGAGGGCGAGAGATTTTGAAACCAGCAAGAAAG
CCCAAGCCGAGAAAGGACGCCCGCGCCGTGATGCAAATATAGCGTTGCTT
CAGGGGCTACTTGACGTGGTGAACTTCGCGTGTGCCAATTGTTAACGAGA
GCCAAAGCCAGAGAAAAGCATCGCTGTGCATGTCTTTGAAAATCTAAGGT
ATTTTTGTACTCGACTGGACCGTCAACATACCGCCATTATATGGAATACC
GGTTGAATATCACCTAACCTATGTGGCTTTCACACAGCTCCAAAGCAGTT
CCGCGGACACAACTGAGTTGTCGTGGTGGATATCTCAAAAACAGCGATTT
CAAATTCTGTGTTTTCCTTGGTGCCCCCGGCGACTTGAGCTGAGCGGACA
GCACACGTATATACGCCGCTTCCTAGATAGCGTGCCTTAGCCTTACTGCG
TGGACAACTCCCCATGAGTGGCCAGTCACTCAACATTCTTTCCTCCGGGA
CCCCAACTCACAGGTATACAATAGTTACGATTCGGGTCAATTCGAGGCGG
GATAAATAAAACGATGGTTTGTGGCGTCGTCGACTTCAACAAACCTGCCT
TTTTCCTTGGTGCCCCCGGCGACTTGAGCTGAGCGGACAGCACACGTATA
TACGCCGCTTCGCTGAAATTCTCGAGAACAACAGTCTGCTGAGCATAGAG
TGGGTTGCTTCGCCCGCCACGCTCTTTTGCGTGATGGTGTGAGGGCTTGG
GTGTGTTTACACACCCAGCAGCCCAGCGGTCACATCATGTCTCCACAGAG
AATTTCTGTATCGCCCAGAACCCCGCAAAAGCTTGACTTGCATTTTAGAA
TGGGCTGTGTCCCCAAACATGACATTCAAACTTTTGCGAGTCGCCGCAGC
TTTGTTTTGATAGGGAGATGTCTTTATCGGCCAATCATCGGCAGCCAGAT
GCGCGATAAGTTTTGGGTTGGGTACTTTAGTATGTAGAAAGGGGTCATAC
GGAGTAGTTACTACGTGACCTGACTGTGAAAGCGGTAGGAAGTGTGTGTG
TGGGTGGATGTGTTATGTTTGTTGTCCCATCTACTCCGTGTGTGTGGTTT
TTGGACGCCGCTCTTCTACTCTTCCTTCGGGGAGTAAACCAGGTGTGGAT
GCCCCACCCCGGGATCACAAACCAGCGATATTTTGTTTGCGCTCCTTTTC
GGCCGAGTTCTTGCTGAGTGCCGGGTTGGGGCGGAGAGAACAGGACTCTG
TCTGTAGCTTCTGTAATGCGCAAGTTCGTAGCAGAAATAACGAAGCGAGT
CGAACTCCAGTGGCGGAGTATGGATGATTTTTTGCCAAACCGAAGTTTGT
CGGGGGGCTCGCACACAAAAAGCACGCACATACCAAAAATTCCCCACTCT
CTCCGGCTCGCGCTGGCACCAGTGCGCCAGCCCTATTGTAGAAGCTCACA
TTGTGTCCACCCCAGACAAAACAAATCACAGAGGGGATACGGAAGACTTC
TCATAGCTAGTTTCGGTGCATATTTTAGACCTCGAATTGCTCTGTAAGCG
TCGAATCAGAGCTGTCTTCCAACACGTTGATGCGCTCGGCCAGTCTAGCA
GCAACAGGCAGCAGCAGCAGGGTCATGATGTGCGCGAAAAATGGTGGTGT
GAAGTATGAAGGGGTGCTCTGCAAACCTGAAACCCTACTCTTGCCGATGT
GCGTAGATTCCTGATGGATCCCAAAGCTCCGCTCACGCAGAAAAACGTGC
TGCAGTCCGTCTCACAACTGTCCGTCTCTCTCTCTCTCTCGGGTCGCTCT
CTCTCTCTTTCCTATCCAAATGGTGCGGTGCTATGGCTTATTGCTGTGCG
TAAACTGTTAAACTACCACCGTAATGTTTGGCCGCCTCTATAGTCACACA
TGTTTACTATACGGCCTCAAAGTCGCGTTTTGGATCAATTCGTGCAAGCT
GAGATATCTGCTCTTCCGTGCCTGCTGGGTACACTGATGTCCTGTGTTTG
GCTGTCCCAGGATGTCCCTCCTTAAAAAATTGCCATCGTATTTATGTGTG
CCTCCTCAAAACCCTGAGTCAAATGCCACTTGTGAAACAGGAGGAAGTCA
GACAGTTTCCTTTGCATGAATCCTTCATAAACCCCCTACCCTTCCTCCCC
CTGTCGATGTTTCGACAGAACGTTACATACGTAATTCTGTACTCTCACGA
AGTGCCAGGAGAAGACGTTGCCGCTATTTCGGGCAGCTATTCGTCACTGT
AGCGGCGATTGAAAGCGCCACTGCTTCCGCCCCAAATCACCCATTCAACG
TCAAGGACAGTGTCTGGGACCCGCAGCAGAGATGGGGAGTGGTTGGTGAA
GGTTGGGGCGGTGACATACCTGGGCTATGAACTAGCCGGGGGGGCCCTTG
TGGCCACGAGTGAGGCGCCCCAAATGGTTTGTTTGGCAAATATATATCTC
GTCGGCTAAACGGTTCAAAATCAGGTCTCTTGGCCGGCTAAACGCTCCAA
AACCTATCCATGCCTCCGACCAGGTGCTCGAACTGGAACCCTGGGACCCG
ACACGCCACGTGTCGAAGGTCGGCGTTGCGTGGGCAGAGTGCGGACGGCG
GGTACCCGGGTACCTAAAAGGCGGGGGGCGCGCGGAGCCCCGCCAGTTGG
TGCAGCTGCAGGTCACGCGTATGGGGTGCCAGCTACTCGATCCCACGGCG
AAGCCCCCCTGGGAGTCGTACACCGAGGTCGTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1560:18662..21447+

>mRNA_L-elsbetiae_contig1560.3929.1 ID=mRNA_L-elsbetiae_contig1560.3929.1|Name=mRNA_L-elsbetiae_contig1560.3929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1560:18662..21447+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCATCGACGACGCCAGGGACATCGAATAGCCTTCATCGAAGCTGACAA
GCGCCGCCGCGCCGCCAGGAGGGCGAGAGATTTTGAAACCAGCAAGAAAG
CCCAAGCCGAGAAAGGACGCCCGCGCCGTGATGCAAATATAGCGTTGCTT
CAGGGGCTACTTGACGTGCGGCATCGACGACGCCAGGGACATCGAATAGC
CTTCATCGAAGCTGACAAGCGCCGCCGCGCCGCCAGGAGGGCGAGAGATT
TTGAAACCAGCAAGAAAGCCCAAGCCGAGAAAGGACGCCCGCGCCGTGAT
GCAAATATAGCGTTGCTTCAGGGGCTACTTGACGTGGTGCTCGAACTGGA
ACCCTGGGACCCGACACGCCACGTGTCGAAGGTCGGCGTTGCGTGGGCAG
AGTGCGGACGGCGGGTACCCGGGTACCTAAAAGGCGGGGGGCGCGCGGAG
CCCCGCCAGTTGGTGCAGCTGCAGGTCACGCGTATGGGGTGCCAGCTACT
CGATCCCACGGCGAAGCCCCCCTGGGAGTCGTACACCGAGGTCGTGCGGG
TGCTCGAACTGGAACCCTGGGACCCGACACGCCACGTGTCGAAGGTCGGC
GTTGCGTGGGCAGAGTGCGGACGGCGGGTACCCGGGTACCTAAAAGGCGG
GGGGCGCGCGGAGCCCCGCCAGTTGGTGCAGCTGCAGGTCACGCGTATGG
GGTGCCAGCTACTCGATCCCACGGCGAAGCCCCCCTGGGAGTCGTACACC
GAGGTCGTGCGG
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