mRNA_L-elsbetiae_contig15593.3917.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15593.3917.1
Unique NamemRNA_L-elsbetiae_contig15593.3917.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: D7FGY0_ECTSI (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGY0_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.330e-38
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   25 SFFVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            SFFVLYESASGYAL+EV EAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQ+VTDDLK
Sbjct:    2 SFFVLYESASGYALLEVMEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQIVTDDLK 76
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BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: W7TM46_9STRA (Nucleolar protein NOP56 like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM46_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.230e-25
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            +VLYESASGYAL E+ + +++ SL +EVQ +V D QRF RTVKLK FQPFT+AENALEN+NA+SE +++DDLK
Sbjct:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLK 76
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BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: K8YR72_NANGC (Nucleolar protein nop56 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YR72_NANGC)

HSP 1 Score: 99.4 bits (246), Expect = 1.590e-24
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            +VLYESASGYAL E+ + +++ SL +EVQ +V D QRF RTVKLK FQPFT+AENALEN+NA+SE +++DDLK
Sbjct:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLK 76
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BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A484E8B5_BRELC (Nop domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8B5_BRELC)

HSP 1 Score: 103 bits (256), Expect = 6.690e-24
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   16 CIQSFFVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            C    FVL+ESASGYA+ EV E EE+GSLL EVQ AV D   F RTVKLK FQPFT+AENALEN+N ISE +++DDLK
Sbjct:   21 CTSQTFVLFESASGYAIFEVVENEEIGSLLAEVQAAVADVSSFGRTVKLKAFQPFTSAENALENINNISEGLLSDDLK 98
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BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A4D9D682_9STRA (Nop domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D682_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.420e-22
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            +VLYESASGYAL E+ + +++ SL +EVQ +V D QRF RTVKLK FQPFT+AENALEN+NA+SE +++DDLK
Sbjct:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLK 76
[Close]
BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A5D6Y2J2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2J2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.760e-22
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            FVL+ESASGYAL EV E EE+G+LL EVQ++V D  +F R VKLK FQPFT+AENALEN+N ISE +V DDLK
Sbjct:   31 FVLFESASGYALFEVVEHEEIGTLLAEVQESVSDLSKFGRIVKLKAFQPFTSAENALENINNISEGIVGDDLK 103
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BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A8K1FGU2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGU2_PYTOL)

HSP 1 Score: 97.8 bits (242), Expect = 5.040e-22
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:   34 VLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            VL+ESASGYAL EV E EE+GSLL+EVQQ+V D  +F R VKLK FQPFT+AENALEN+N ISE ++ DDLK
Sbjct:    7 VLFESASGYALFEVVEHEEIGSLLDEVQQSVNDLAKFGRIVKLKAFQPFTSAENALENINNISEGLLGDDLK 78
[Close]
BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A2P4X144_9STRA (Nucleolar protein Nop56 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X144_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.490e-22
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            FVL+ESASGYA+ EV E EE+G LL EVQ AV D   F R VKLK FQPFT+AENALEN+N +SE +V DDLK
Sbjct:    6 FVLFESASGYAIFEVVENEEIGGLLAEVQAAVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLVGDDLK 78
[Close]
BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A0P1B6X2_PLAHL (Nucleolar protein nop56 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6X2_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 1.010e-21
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            FVL+ESASGYA+ EV E EE+GSLL EVQ +V D   F R VKLK FQPFT+AENALEN+N ISE +++DDLK
Sbjct:    6 FVLFESASGYAIFEVIENEEIGSLLTEVQASVADISSFGRIVKLKAFQPFTSAENALENINNISEGLLSDDLK 78
[Close]
BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Match: A0A067BR49_SAPPC (Nop domain-containing protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BR49_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 1.740e-21
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   31 FVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQMVTDDLK 249
            FVL+ESASGYAL EV EAE++G LL++VQ+ V D  +F   VKLK F PFT+AE+ALEN+N+ISE +VTDDLK
Sbjct:    5 FVLFESASGYALFEVVEAEQIGQLLDQVQKGVQDLAKFGAAVKLKAFSPFTSAESALENINSISEGLVTDDLK 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15593.3917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGY0_ECTSI4.330e-3896.00Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TM46_9STRA5.230e-2565.75Nucleolar protein NOP56 like protein n=1 Tax=Nanno... [more]
K8YR72_NANGC1.590e-2465.75Nucleolar protein nop56 n=1 Tax=Nannochloropsis ga... [more]
A0A484E8B5_BRELC6.690e-2467.95Nop domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A4D9D682_9STRA1.420e-2265.75Nop domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A5D6Y2J2_9STRA4.760e-2269.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FGU2_PYTOL5.040e-2270.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4X144_9STRA6.490e-2268.49Nucleolar protein Nop56 (Fragment) n=1 Tax=Phytoph... [more]
A0A0P1B6X2_PLAHL1.010e-2168.49Nucleolar protein nop56 n=1 Tax=Plasmopara halsted... [more]
A0A067BR49_SAPPC1.740e-2165.75Nop domain-containing protein n=5 Tax=Saprolegniac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15593contigL-elsbetiae_contig15593:1996..2244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.2e-32
Seed eggNOG ortholog2880.D7FGY0
KEGG koko:K14564
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030684,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG1498@1,KOG2573@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.0412998-CDS-L-elsbetiae_contig15593:1995..22441622815638.0412998-CDS-L-elsbetiae_contig15593:1995..2244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15593 1996..2244 -
1691683006.8152637-CDS-L-elsbetiae_contig15593:1995..22441691683006.8152637-CDS-L-elsbetiae_contig15593:1995..2244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15593 1996..2244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15593.3917.1prot_L-elsbetiae_contig15593.3917.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15593 1996..2244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15593.3917.1

>prot_L-elsbetiae_contig15593.3917.1 ID=prot_L-elsbetiae_contig15593.3917.1|Name=mRNA_L-elsbetiae_contig15593.3917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MFAPPCIQSFFVLYESASGYALMEVNEAEEVGSLLEEVQQAVLDPQRFCR
TVKLKGFQPFTTAENALENVNAISEQMVTDDLK
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mRNA from alignment at L-elsbetiae_contig15593:1996..2244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15593.3917.1 ID=mRNA_L-elsbetiae_contig15593.3917.1|Name=mRNA_L-elsbetiae_contig15593.3917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=249bp|location=Sequence derived from alignment at L-elsbetiae_contig15593:1996..2244- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGCGCCGCCCTGCATCCAGTCGTTCTTCGTTCTCTACGAATCGGC
GTCGGGGTATGCCTTAATGGAGGTTAATGAAGCGGAAGAGGTAGGAAGCT
TGCTGGAGGAAGTGCAGCAGGCTGTGCTGGATCCGCAGCGCTTCTGCCGC
ACGGTGAAACTGAAGGGATTCCAGCCCTTCACCACCGCGGAGAATGCGCT
CGAGAACGTGAACGCTATCAGCGAGCAAATGGTGACAGACGATCTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15593:1996..2244-

>mRNA_L-elsbetiae_contig15593.3917.1 ID=mRNA_L-elsbetiae_contig15593.3917.1|Name=mRNA_L-elsbetiae_contig15593.3917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig15593:1996..2244- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGCGCCGCCCTGCATCCAGTCGTTCTTCGTTCTCTACGAATCGGC
GTCGGGGTATGCCTTAATGGAGGTTAATGAAGCGGAAGAGGTAGGAAGCT
TGCTGGAGGAAGTGCAGCAGGCTGTGCTGGATCCGCAGCGCTTCTGCCGC
ACGGTGAAACTGAAGGGATTCCAGCCCTTCACCACCGCGGAGAATGCGCT
CGAGAACGTGAACGCTATCAGCGAGCAAATGGTGACAGACGATCTCAAGA
TGTTTGCGCCGCCCTGCATCCAGTCGTTCTTCGTTCTCTACGAATCGGCG
TCGGGGTATGCCTTAATGGAGGTTAATGAAGCGGAAGAGGTAGGAAGCTT
GCTGGAGGAAGTGCAGCAGGCTGTGCTGGATCCGCAGCGCTTCTGCCGCA
CGGTGAAACTGAAGGGATTCCAGCCCTTCACCACCGCGGAGAATGCGCTC
GAGAACGTGAACGCTATCAGCGAGCAAATGGTGACAGACGATCTCAAG
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