mRNA_L-elsbetiae_contig1557.3908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1557.3908.1
Unique NamemRNA_L-elsbetiae_contig1557.3908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1557.3908.1 vs. uniprot
Match: A0A6H5JBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.510e-22
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    7 PPSTVGSGALGYYIIYQGLEDLEIRRKLARAYWKLASSLRYCAPFLANDSFAWNEHQHAARDQDPLASTDL---PGELTPPG-REAPNQLESTLS--LDEEKVPPALVR 315
            P +TVGSGALGYYI+YQG ED+ IRRKLARAYWKLA SLRYCAPFLAND      H        P A++D+   PGEL PP   + P + + +L+   D   VPP+ VR
Sbjct:  464 PSTTVGSGALGYYIVYQGFEDVGIRRKLARAYWKLAPSLRYCAPFLANDDDLSTGHYV------PRATSDVVPVPGELGPPTVGKLPEEQQDSLNRPADGADVPPSGVR 566
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BLAST of mRNA_L-elsbetiae_contig1557.3908.1 vs. uniprot
Match: D7FTI3_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.140e-10
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   49 IYQGLEDLEIRRKLARAYWKLASSLRYCAPFLANDSFAWNEHQHAARDQDPLASTDLPGELTPPG-REAPNQLESTLS--LDEEKVPPALVR 315
            I +G ED+E+RRKLARAYWK A SLRYCAPFLA D      H          +   +PGEL PP   E P + + +L+   D   VPP+ +R
Sbjct:  211 ITKGFEDVEVRRKLARAYWKFAPSLRYCAPFLATDGDKSIGHYAPG-----ASDARVPGELGPPTVGELPEEPQDSLNRPADRADVPPSGLR 297
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BLAST of mRNA_L-elsbetiae_contig1557.3908.1 vs. uniprot
Match: A0A662YHQ3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHQ3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   13 STVGSGALGYYIIYQGLEDLEIRRKLARAYWKLASSLRYCAPFLAND 153
            +T+GSG++GYY IYQG  D+E+R KL+  Y K A  L + AP +A D
Sbjct:  211 TTIGSGSMGYYAIYQGFNDVEVRAKLSEIYLKAAPFLAFTAPHVARD 257
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BLAST of mRNA_L-elsbetiae_contig1557.3908.1 vs. uniprot
Match: A0A662YG79_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG79_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.470e-5
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   13 STVGSGALGYYIIYQGLEDLEIRRKLARAYWKLASSLRYCAPFLAND 153
            +T+G G++GYY IYQG  D+E+R KL+  Y K A  L + AP +A D
Sbjct:  347 TTIGPGSMGYYAIYQGFNDVEVRAKLSEIYLKAAPFLVFTAPHVARD 393
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1557.3908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBN3_9PHAE5.510e-2255.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTI3_ECTSI1.140e-1045.65Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A662YHQ3_9STRA1.620e-651.06Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YG79_9STRA1.470e-548.94Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1557contigL-elsbetiae_contig1557:2786..3614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D7FTI3
Hectar predicted targeting categoryother localisation
EggNOG OGs2CYFD@1,2S40I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size378
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1557.3908.1prot_L-elsbetiae_contig1557.3908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1557 2786..3614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.209743-CDS-L-elsbetiae_contig1557:2785..30381622815637.209743-CDS-L-elsbetiae_contig1557:2785..3038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 2786..3038 -
1691683006.2935221-CDS-L-elsbetiae_contig1557:2785..30381691683006.2935221-CDS-L-elsbetiae_contig1557:2785..3038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 2786..3038 -
1622815637.223758-CDS-L-elsbetiae_contig1557:3244..33121622815637.223758-CDS-L-elsbetiae_contig1557:3244..3312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 3245..3312 -
1691683006.3028388-CDS-L-elsbetiae_contig1557:3244..33121691683006.3028388-CDS-L-elsbetiae_contig1557:3244..3312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 3245..3312 -
1622815637.2405195-CDS-L-elsbetiae_contig1557:3557..36141622815637.2405195-CDS-L-elsbetiae_contig1557:3557..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 3558..3614 -
1691683006.3107812-CDS-L-elsbetiae_contig1557:3557..36141691683006.3107812-CDS-L-elsbetiae_contig1557:3557..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1557 3558..3614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1557.3908.1

>prot_L-elsbetiae_contig1557.3908.1 ID=prot_L-elsbetiae_contig1557.3908.1|Name=mRNA_L-elsbetiae_contig1557.3908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
SSPPSTVGSGALGYYIIYQGLEDLEIRRKLARAYWKLASSLRYCAPFLAN
DSFAWNEHQHAARDQDPLASTDLPGELTPPGREAPNQLESTLSLDEEKVP
PALVRVVRANIKSDGAQDSERYGSSS
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mRNA from alignment at L-elsbetiae_contig1557:2786..3614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1557.3908.1 ID=mRNA_L-elsbetiae_contig1557.3908.1|Name=mRNA_L-elsbetiae_contig1557.3908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=829bp|location=Sequence derived from alignment at L-elsbetiae_contig1557:2786..3614- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCCCTCCTTCTACCGTTGGATCAGGAGCTCTTGGCTACTACATCAT
ATACCAGGCACGATCCGCACGATCGGCAGTTGGATCGCCTCGGAATCATC
TTTCAATCTAAAATGCCAAAATATAGTGCAACCGGTCGTTACACAGCGTG
CTTCCTACATTGGTCCGCGGCAACATAAAACTCGGTGCATGCTTTGTCCC
TGGGTTCAATTTTGGTCCCAGTGAGCCCAGCGTTGCTGAGTGAGCCAAGG
GCGTAAAGGGGTAGTTCGGGGAATCTAATCATTACCACCTATTTTTGGAC
AGGGGCTCGAAGATTTAGAGATCCGCCGGAAGCTGGCGCGCGCTTACTGG
AAACTTGCTTCATCGCTTAGGTGGGTGTGCTGGTGTACATTATATAAAGT
ACGCGAACAACCTCGACCCGATATGCGCAGCAGCACTTCGAACCTGGCTA
AACCGGGACGAACTGACGCCTACACGAGTGTTGACGGCCAAACCGCTATT
TCTCGTGTAGTACCAGGCTTGTCCAGTAAGTTTCCTCCCGTATCGCCTTC
ACGCGCCCCAACTATGCACCCCACAGGTACTGCGCCCCCTTCCTAGCAAA
CGACAGCTTCGCCTGGAACGAACATCAGCACGCGGCTCGCGATCAAGACC
CGTTGGCAAGCACGGACCTACCAGGAGAGCTGACCCCTCCCGGCAGAGAA
GCACCAAACCAGCTAGAATCGACACTCTCGCTTGACGAAGAAAAAGTGCC
GCCTGCGTTAGTACGAGTGGTGAGAGCAAATATAAAGTCAGACGGCGCGC
AAGATTCCGAAAGATACGGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1557:2786..3614-

>mRNA_L-elsbetiae_contig1557.3908.1 ID=mRNA_L-elsbetiae_contig1557.3908.1|Name=mRNA_L-elsbetiae_contig1557.3908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig1557:2786..3614- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCCCTCCTTCTACCGTTGGATCAGGAGCTCTTGGCTACTACATCAT
ATACCAGAGCAGCCCTCCTTCTACCGTTGGATCAGGAGCTCTTGGCTACT
ACATCATATACCAGGGGCTCGAAGATTTAGAGATCCGCCGGAAGCTGGCG
CGCGCTTACTGGAAACTTGCTTCATCGCTTAGGGGCTCGAAGATTTAGAG
ATCCGCCGGAAGCTGGCGCGCGCTTACTGGAAACTTGCTTCATCGCTTAG
GTACTGCGCCCCCTTCCTAGCAAACGACAGCTTCGCCTGGAACGAACATC
AGCACGCGGCTCGCGATCAAGACCCGTTGGCAAGCACGGACCTACCAGGA
GAGCTGACCCCTCCCGGCAGAGAAGCACCAAACCAGCTAGAATCGACACT
CTCGCTTGACGAAGAAAAAGTGCCGCCTGCGTTAGTACGAGTGGTGAGAG
CAAATATAAAGTCAGACGGCGCGCAAGATTCCGAAAGATACGGCAGCAGC
AGCGTACTGCGCCCCCTTCCTAGCAAACGACAGCTTCGCCTGGAACGAAC
ATCAGCACGCGGCTCGCGATCAAGACCCGTTGGCAAGCACGGACCTACCA
GGAGAGCTGACCCCTCCCGGCAGAGAAGCACCAAACCAGCTAGAATCGAC
ACTCTCGCTTGACGAAGAAAAAGTGCCGCCTGCGTTAGTACGAGTGGTGA
GAGCAAATATAAAGTCAGACGGCGCGCAAGATTCCGAAAGATACGGCAGC
AGCAGC
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