mRNA_L-elsbetiae_contig15565.3907.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15565.3907.1
Unique NamemRNA_L-elsbetiae_contig15565.3907.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15565.3907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15565contigL-elsbetiae_contig15565:304..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15565.3907.1prot_L-elsbetiae_contig15565.3907.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15565 502..754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.1360462-UTR-L-elsbetiae_contig15565:303..5011622815637.1360462-UTR-L-elsbetiae_contig15565:303..501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15565 304..501 +
1691683006.269234-UTR-L-elsbetiae_contig15565:303..5011691683006.269234-UTR-L-elsbetiae_contig15565:303..501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15565 304..501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.14744-CDS-L-elsbetiae_contig15565:501..6671622815637.14744-CDS-L-elsbetiae_contig15565:501..667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15565 502..667 +
1691683006.2776806-CDS-L-elsbetiae_contig15565:501..6671691683006.2776806-CDS-L-elsbetiae_contig15565:501..667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15565 502..667 +
1622815637.1606379-CDS-L-elsbetiae_contig15565:683..7541622815637.1606379-CDS-L-elsbetiae_contig15565:683..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15565 684..754 +
1691683006.2852323-CDS-L-elsbetiae_contig15565:683..7541691683006.2852323-CDS-L-elsbetiae_contig15565:683..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15565 684..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15565.3907.1

>prot_L-elsbetiae_contig15565.3907.1 ID=prot_L-elsbetiae_contig15565.3907.1|Name=mRNA_L-elsbetiae_contig15565.3907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MALRAQMALPHKNLEVRGAAAGRGIFCVGESNAVAAVTDAPGLNPWYEVG
SGVLFDLLICSSCERRVSFRQFQVCAASS
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mRNA from alignment at L-elsbetiae_contig15565:304..754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15565.3907.1 ID=mRNA_L-elsbetiae_contig15565.3907.1|Name=mRNA_L-elsbetiae_contig15565.3907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=451bp|location=Sequence derived from alignment at L-elsbetiae_contig15565:304..754+ (Laminarionema elsbetiae ELsaHSoW15)
ACTTCAGTCAGGCACTAGCTCCCCACCCCAACCATACTATTTCATAGAAG
TATTTTTCTCCGGCAGCGTTGTACCTAAGTGGATGTAATCGGGAAATATT
TAGTGTTTGTCGGTACTACCACCGAGAATGATATCCAAGTTTTTATCTCC
CTTCAGCTTGGCGAAGTTTCAACACACAATTTCCATAGAGGCGCAAAAAT
GGCACTTAGGGCGCAGATGGCGCTGCCACACAAAAATCTTGAAGTTCGGG
GGGCGGCCGCGGGAAGAGGAATATTCTGTGTAGGTGAAAGCAACGCAGTC
GCTGCTGTCACTGACGCACCTGGGCTCAACCCCTGGTACGAAGTTGGCAG
TGGGGTACTCTTTGTGGAGGCGGTTTCAATATTTACTTATATGCAGCAGC
TGTGAAAGGAGGGTGAGCTTCAGGCAGTTCCAAGTCTGCGCTGCCAGTTC
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15565:304..754+

>mRNA_L-elsbetiae_contig15565.3907.1 ID=mRNA_L-elsbetiae_contig15565.3907.1|Name=mRNA_L-elsbetiae_contig15565.3907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig15565:304..754+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACTTAGGGCGCAGATGGCGCTGCCACACAAAAATCTTGAAGTTCG
GGGGGCGGCCGCGGGAAGAGGAATATTCTGTGTAGGTGAAAGCAACGCAG
TCGCTGCTGTCACTGACGCACCTGGGCTCAACCCCTGGTACGAAGTTGGC
AGTGGGGTACTCTTTGATGGCACTTAGGGCGCAGATGGCGCTGCCACACA
AAAATCTTGAAGTTCGGGGGGCGGCCGCGGGAAGAGGAATATTCTGTGTA
GGTGAAAGCAACGCAGTCGCTGCTGTCACTGACGCACCTGGGCTCAACCC
CTGGTACGAAGTTGGCAGTGGGGTACTCTTTGATTTACTTATATGCAGCA
GCTGTGAAAGGAGGGTGAGCTTCAGGCAGTTCCAAGTCTGCGCTGCCAGT
TCGATTTACTTATATGCAGCAGCTGTGAAAGGAGGGTGAGCTTCAGGCAG
TTCCAAGTCTGCGCTGCCAGTTCG
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