mRNA_L-elsbetiae_contig15563.3904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15563.3904.1
Unique NamemRNA_L-elsbetiae_contig15563.3904.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Match: UPI00145FA855 (hypothetical protein n=1 Tax=Alteromonas ponticola TaxID=2720613 RepID=UPI00145FA855)

HSP 1 Score: 87.0 bits (214), Expect = 9.340e-21
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 VKTIIARIAINQFRANDAYPLDCDMWNIDTGENDVRASHRDNSGVIKFFCRYQGDIQRTELKISNFASEYQDDCILI 231
            V+ II RIAI++FRA  AY LD +MWNID   NDVRA   D + ++KFFCRY+ DI+RT+ KI+ FA  +   C L+
Sbjct:    2 VENIINRIAIDKFRARQAYSLDSNMWNIDGSLNDVRAVCNDGNEIVKFFCRYEEDIKRTDAKIAEFARNHSTLCELV 78
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BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Match: A0A317Q9W4_9GAMM (Uncharacterized protein n=3 Tax=Idiomarinaceae TaxID=267893 RepID=A0A317Q9W4_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 3.950e-8
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   52 AYPLDCDMWNIDTGENDVRASHRDNSGVIKFFCRYQGDIQRTELKISNFASEYQDD---CIL 228
            AY LD   ++ID GEND+RA +   + V+KFFCRYQ D+   + K+  FA+++  D   CI+
Sbjct:   34 AYQLDDGSYSIDAGENDIRAIYDQENTVVKFFCRYQRDMNFYDKKLMAFATKHGIDTKPCII 95
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BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Match: A0A094IQY8_9GAMM (Uncharacterized protein n=2 Tax=Idiomarinaceae TaxID=267893 RepID=A0A094IQY8_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 9.510e-8
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   52 AYPLDCDMWNIDTGENDVRASHRDNSGVIKFFCRYQGDIQRTELKISNFASEYQDD 219
            AY LD   ++ID GEND+RA +   +  IKFFCRYQ D+   + K+  FA+++  D
Sbjct:   12 AYQLDDGSYSIDAGENDIRAIYDQENAEIKFFCRYQRDMNFYDKKLMAFATKHGID 67
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BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Match: A0A432XF51_9GAMM (Uncharacterized protein n=2 Tax=Idiomarina fontislapidosi TaxID=263723 RepID=A0A432XF51_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 1.650e-7
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 VKTIIARIAINQFRAND-AYPLDCDMWNIDTGENDVRASHRDNSGVIKFFCRYQGDIQRTELKISNFASEYQDD 219
            V+ +++ +    F     AY LD   ++ID GEND+RA +   +  IKFFCRYQ D+   + K+  FA+++  D
Sbjct:   18 VEEVLSSLTKESFAGGQSAYQLDDGTFSIDAGENDIRAIYDQENAEIKFFCRYQRDMNFYDKKLMAFATKHGID 91
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BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Match: UPI000F89C5F3 (hypothetical protein n=1 Tax=Idiomarina aquatica TaxID=1327752 RepID=UPI000F89C5F3)

HSP 1 Score: 53.1 bits (126), Expect = 3.090e-7
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   52 AYPLDCDMWNIDTGENDVRASHRDNSGVIKFFCRYQGDIQRTELKISNFASEYQDD 219
            AY LD   ++ID GEND+RA +   +  IKFFCRYQ D+   + K+  FA+++  D
Sbjct:   34 AYRLDDGTFSIDAGENDIRAIYDQENAEIKFFCRYQPDMNFYDKKLMAFATKHGID 89
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BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Match: A0A432XYF3_9GAMM (Uncharacterized protein n=2 Tax=Idiomarina fontislapidosi TaxID=263723 RepID=A0A432XYF3_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 9.900e-7
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   52 AYPLDCDMWNIDTGENDVRASHRDNSGVIKFFCRYQGDIQRTELKISNFASEYQDD 219
            AY L   ++++D GEND+RA +   +  IKFFCRYQ D+   + K+  FA+++  D
Sbjct:   24 AYQLGDGIYSVDAGENDIRAIYDQENAEIKFFCRYQRDMNFYDKKLMAFATKHGID 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15563.3904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00145FA8559.340e-2153.25hypothetical protein n=1 Tax=Alteromonas ponticola... [more]
A0A317Q9W4_9GAMM3.950e-843.55Uncharacterized protein n=3 Tax=Idiomarinaceae Tax... [more]
A0A094IQY8_9GAMM9.510e-844.64Uncharacterized protein n=2 Tax=Idiomarinaceae Tax... [more]
A0A432XF51_9GAMM1.650e-736.49Uncharacterized protein n=2 Tax=Idiomarina fontisl... [more]
UPI000F89C5F33.090e-744.64hypothetical protein n=1 Tax=Idiomarina aquatica T... [more]
A0A432XYF3_9GAMM9.900e-741.07Uncharacterized protein n=2 Tax=Idiomarina fontisl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15563contigL-elsbetiae_contig15563:791..1039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.0148761-CDS-L-elsbetiae_contig15563:790..10391622815637.0148761-CDS-L-elsbetiae_contig15563:790..1039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15563 791..1039 -
1691683006.2301755-CDS-L-elsbetiae_contig15563:790..10391691683006.2301755-CDS-L-elsbetiae_contig15563:790..1039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15563 791..1039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15563.3904.1prot_L-elsbetiae_contig15563.3904.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15563 791..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15563.3904.1

>prot_L-elsbetiae_contig15563.3904.1 ID=prot_L-elsbetiae_contig15563.3904.1|Name=mRNA_L-elsbetiae_contig15563.3904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
VKTIIARIAINQFRANDAYPLDCDMWNIDTGENDVRASHRDNSGVIKFFC
RYQGDIQRTELKISNFASEYQDDCILIEKCLN*
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mRNA from alignment at L-elsbetiae_contig15563:791..1039-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15563.3904.1 ID=mRNA_L-elsbetiae_contig15563.3904.1|Name=mRNA_L-elsbetiae_contig15563.3904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=249bp|location=Sequence derived from alignment at L-elsbetiae_contig15563:791..1039- (Laminarionema elsbetiae ELsaHSoW15)
GTAAAGACAATTATTGCTAGGATCGCAATAAATCAATTTCGTGCAAATGA
TGCATATCCTTTGGATTGCGATATGTGGAACATTGACACAGGCGAAAATG
ATGTTAGAGCTAGTCATCGAGACAATAGTGGTGTCATCAAATTTTTCTGT
CGCTACCAAGGAGATATTCAACGCACAGAATTAAAAATTTCTAATTTCGC
TAGTGAGTATCAAGATGATTGTATTTTGATAGAAAAATGTCTGAATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15563:791..1039-

>mRNA_L-elsbetiae_contig15563.3904.1 ID=mRNA_L-elsbetiae_contig15563.3904.1|Name=mRNA_L-elsbetiae_contig15563.3904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig15563:791..1039- (Laminarionema elsbetiae ELsaHSoW15)
GTAAAGACAATTATTGCTAGGATCGCAATAAATCAATTTCGTGCAAATGA
TGCATATCCTTTGGATTGCGATATGTGGAACATTGACACAGGCGAAAATG
ATGTTAGAGCTAGTCATCGAGACAATAGTGGTGTCATCAAATTTTTCTGT
CGCTACCAAGGAGATATTCAACGCACAGAATTAAAAATTTCTAATTTCGC
TAGTGAGTATCAAGATGATTGTATTTTGATAGAAAAATGTCTGAATTAAG
TAAAGACAATTATTGCTAGGATCGCAATAAATCAATTTCGTGCAAATGAT
GCATATCCTTTGGATTGCGATATGTGGAACATTGACACAGGCGAAAATGA
TGTTAGAGCTAGTCATCGAGACAATAGTGGTGTCATCAAATTTTTCTGTC
GCTACCAAGGAGATATTCAACGCACAGAATTAAAAATTTCTAATTTCGCT
AGTGAGTATCAAGATGATTGTATTTTGATAGAAAAATGTCTGAATTAA
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