mRNA_L-elsbetiae_contig15560.3901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15560.3901.1
Unique NamemRNA_L-elsbetiae_contig15560.3901.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 1.710e-121
Identity = 208/372 (55.91%), Postives = 251/372 (67.47%), Query Frame = 1
Query:    4 PRRGVALPRPPLALPLFSTLRNMIPGSQTAAGSGXXXXKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLG-----EGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGC-QRFGARKGLP-PVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG 1098
            PRR  A PRP LA+P       ++P  QT   SG    KRAA E L H +  P+  H+S+ Q RT G G SAS STGGR KG LAQQ+ +CH CR N+PT + RHAC G     E  GC+YW+C+KC+ +W Q SG   GF CCLH G REWC C +R   ++     V++R + AQNR+ STDVY FPT T+ SPT               TTYSVC SNSQNRVAVIKAGD F+CSR +CR +E LSSA  GDT SALP+RC HAEVV     +S  + +A+ LLSA  F+ AL K+PAGTFN  T  +MRARA+QAAKEG+PLLV +G+TKYFAVRDG KFNR+VIGEWGHVKY++ GSK+FQCK   G
Sbjct:  176 PRR--AQPRPALAMP------QLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSG-REWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNG 537          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 3.980e-117
Identity = 205/372 (55.11%), Postives = 249/372 (66.94%), Query Frame = 1
Query:    4 PRRGVALPRPPLALPLFSTLRNMIPGSQTAAGSGXXXXKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLG-----EGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGC-QRFGARKGLP-PVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG 1098
            PRR  A PRP LA+P       ++P  QT   SG    KRAA E L H +  P+  H+S+ Q RT G G SAS STGGR KG LAQQ+ +CH CR N+PT + RHAC G     E  GC+YW+ +KC+ +W Q SG   GF CCLH G REWC C +R   ++     V++R + AQNR+ STDVY FPT T+ SPT               TTYSVC SN QNRVAVIKAG  F+CSR +CR +E LSSA  GDT SALP+RC HAEVV     +S  + +A+ LLSA  F+ AL K+PAGTFN  T  +MRARA+QAAKEG+PLLV +G+TKYFAVRDG KFNR+VIGEWGHVKY++ GSK+FQCK  +G
Sbjct:   92 PRR--AQPRPALAMP------QLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSG-REWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASDG 453          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.500e-89
Identity = 176/369 (47.70%), Postives = 224/369 (60.70%), Query Frame = 1
Query:    7 RRGVALPRPPLALPLFSTLRNMIPGSQTAAGSGXXXXKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACL-GEGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGCQ-RFGARKGLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVEN--LSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAK-IPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEE-SGSKMFQCKVGE 1095
            R G   PR PLA+P+F  +R   P  QT   SG     R A   + HEN + S   ESN+Q   A  G+S+S STGGR KG L +Q+KSCH CR N+P    ++AC+ G     +YWLC+ C  +W + SG+ G F CCLH G ++WC C  R   R+G  P LER   A++R  ST ++ FP RT  + T                TYSVC S    RVAVIK GDEF+CSR +CR V+N   S+A  G T+SALPA C HAEVV     SS  +  A+ L SAE F+ AL   +PAG F+  T  AM ARA+QAA++GVP+LVG+G TKYF + DG + NR V+G W HVKY++  GSK+FQCKVGE
Sbjct:  145 RPGANQPRSPLAMPMFIPIRTS-PAPQTTGTSGGVRENRGAGTFV-HENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNPRWNYWLCKSCFKEWTEASGVDG-FLCCLHRG-KQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVGE 509          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 2.690e-61
Identity = 128/275 (46.55%), Postives = 172/275 (62.55%), Query Frame = 1
Query:  211 ISASGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLGEGEGCHYWLCRKCVWKWQQTSGLAGGFRCCLHGGNREWCGCQ-RFGARKGLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIG 1032
            +S+S STGGR KG L +++++CH CR   P    ++AC G+   C YWLC+KC+ +W + SG  G F+CCLH G+  WC C+ R   R G   VL+R   A+ R V T V+ FP  +    T               TTYSVC S S NRVAVIKAG+++MCSRN+C        +  G T+  LPARCPHAEVV     SST + +A+ + SAE F+ AL  +P GTFN +T  AM  RA+QAA+EGVP+LVG+G T+YF ++DG + +R+VIG
Sbjct:    1 MSSSVSTGGRRKGQLTEEARTCHECRTKDPRQGIKNAC-GDS-ACCYWLCQKCLERWTEQSGRDG-FQCCLHYGSL-WCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC--------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIG 263          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.120e-51
Identity = 109/246 (44.31%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  376 KWQQTSGLAGGFRCCLHGGNREWCGC--QRFGARKGLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSS--AGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLL-SAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKM-FQCKVGE 1095
            KW ++S     F CC+H   +E C C  ++  ARKG   +L+R   A+ R V T V+  P+ T T+PT               TTYS C S  QNRV+V+++   +MCSR  C+ +E LS+  A  GDT   L   C HA+VV     SS  ++ A  LL SAE F  AL  +P GTFN  T  A+RAR  +A + G+P+LV +GDTK+FAVRDGP FNR+++G W HVK EESG K   +CKVG+
Sbjct:    3 KWLRSSAQLSHFMCCVHF-EKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPS-TQTTPTTADSTPTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVGQ 246          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.660e-49
Identity = 107/208 (51.44%), Postives = 135/208 (64.90%), Query Frame = 1
Query:  475 GLPPVLERCKAAQNRRVSTDVYAFPTRTATSPTXXXXXXXXXXXXXXXTTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENL--SSAGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESG-SKMFQCKV 1089
            G  PVL+R   A+ R V   V+ FP R+    T                T+SVC S S NRVAVIKAG+++MCSR+ CR V N+  S+A AG T S LPARCPHAEVV     SST + +A+ L SA  F+ AL  +P GTFN +T  AM  RA+QAA+ GVP+LVG+G T+ F ++DG + NR+VIGEW HVKY++ G SKMFQCKV
Sbjct:  575 GPVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: D8LKG9_ECTSI (CxC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.030e-32
Identity = 82/167 (49.10%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  619 TTYSVCASNSQNRVAVIKAGDEFMCSRNNCRLVENLSSAGA--GDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEA-FQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYE----ESGSKMFQCKVGEG 1098
            TT+SVC + +Q RV+V+KA + FMCSR  CR VE L +A    GDTNSAL  RC HA+VV    +SS  I  A   L+ +  F+ ALA +P GTFN     AM+ R  +A +EGVP+LV + +T +FAVRDG  F R+VIG WGHVK      +    MFQCK  +G
Sbjct:  297 TTFSVCTALNQLRVSVVKANNVFMCSRGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLAETAWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCKDTDG 463          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.530e-32
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  733 AGAGDTNSALPARCPHAEVVHTELMSSTEISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESG-SKMFQCKV 1089
            A  G T S LPARCP  EVV     SST + +A+ L SA  F+ AL  +P GTFN +T  AM  RA+QAAKEGVP+LVG+G T+ F ++DG + NR+VIGEW HVKY++ G SKMFQCKV
Sbjct:   10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.670e-31
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1
Query:  826 QAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVGIGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG 1098
            +A+ LLSA  F+ AL K+PAGTFN  T  +MRARA+QAAKEG+PLLV +G+TKYFAVRDG KFNR+VIGEWGHVKY++ GSK+FQCK   G
Sbjct:    5 KADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNG 95          
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Match: A0A6H5L2J5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.130e-6
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 3
Query: 1458 LLFAAVSVFSLWPFMKANNGNPCGDSMSRKHTGRCVHAAIVAV 1586
            +L  AV+   L   +K NNGNPC DS SRKHTGRCVHA IVAV
Sbjct:    5 MLLVAVAFCFLMALVKGNNGNPCSDSTSRKHTGRCVHAGIVAV 47          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15560.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L8M0_9PHAE1.710e-12155.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z2_9PHAE3.980e-11755.11CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FN79_ECTSI1.500e-8947.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW8_9PHAE2.690e-6146.55CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVV8_9PHAE3.120e-5144.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH13_9PHAE2.660e-4951.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKG9_ECTSI1.030e-3249.10CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KLI9_9PHAE1.530e-3257.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ13_9PHAE2.670e-3169.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2J5_9PHAE1.130e-665.12CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15560contigL-elsbetiae_contig15560:1321..3765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1586
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15560.3901.1prot_L-elsbetiae_contig15560.3901.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15560 1390..3280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.7858672-UTR-L-elsbetiae_contig15560:1320..13891622815636.7858672-UTR-L-elsbetiae_contig15560:1320..1389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15560 1321..1389 +
1691683006.1176333-UTR-L-elsbetiae_contig15560:1320..13891691683006.1176333-UTR-L-elsbetiae_contig15560:1320..1389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15560 1321..1389 +
1622815636.848352-UTR-L-elsbetiae_contig15560:3280..37651622815636.848352-UTR-L-elsbetiae_contig15560:3280..3765Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15560 3281..3765 +
1691683006.1541414-UTR-L-elsbetiae_contig15560:3280..37651691683006.1541414-UTR-L-elsbetiae_contig15560:3280..3765Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15560 3281..3765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.807452-CDS-L-elsbetiae_contig15560:1389..17781622815636.807452-CDS-L-elsbetiae_contig15560:1389..1778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15560 1390..1778 +
1691683006.1285865-CDS-L-elsbetiae_contig15560:1389..17781691683006.1285865-CDS-L-elsbetiae_contig15560:1389..1778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15560 1390..1778 +
1622815636.8206024-CDS-L-elsbetiae_contig15560:2391..26461622815636.8206024-CDS-L-elsbetiae_contig15560:2391..2646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15560 2392..2646 +
1691683006.137194-CDS-L-elsbetiae_contig15560:2391..26461691683006.137194-CDS-L-elsbetiae_contig15560:2391..2646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15560 2392..2646 +
1622815636.834551-CDS-L-elsbetiae_contig15560:2892..32801622815636.834551-CDS-L-elsbetiae_contig15560:2892..3280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15560 2893..3280 +
1691683006.1459389-CDS-L-elsbetiae_contig15560:2892..32801691683006.1459389-CDS-L-elsbetiae_contig15560:2892..3280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15560 2893..3280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15560.3901.1

>prot_L-elsbetiae_contig15560.3901.1 ID=prot_L-elsbetiae_contig15560.3901.1|Name=mRNA_L-elsbetiae_contig15560.3901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
MIPGSQTAAGSGGGGGKRAAVEVLPHENRSPSPGHESNKQPRTAGRGISA
SGSTGGRPKGHLAQQSKSCHTCRNNRPTDDGRHACLGEGEGCHYWLCRKC
VWKWQQTSGLAGGFRCCLHGGNREWCGCQRFGARKGLPPVLERCKAAQNR
RVSTDVYAFPTRTATSPTAATTTPSSTSTSGTGTTYSVCASNSQNRVAVI
KAGDEFMCSRNNCRLVENLSSAGAGDTNSALPARCPHAEVVHTELMSSTE
ISQAETLLSAEAFQCALAKIPAGTFNAATAGAMRARAEQAAKEGVPLLVG
IGDTKYFAVRDGPKFNRSVIGEWGHVKYEESGSKMFQCKVGEG*
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mRNA from alignment at L-elsbetiae_contig15560:1321..3765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15560.3901.1 ID=mRNA_L-elsbetiae_contig15560.3901.1|Name=mRNA_L-elsbetiae_contig15560.3901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2445bp|location=Sequence derived from alignment at L-elsbetiae_contig15560:1321..3765+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCTCGCCGGGGTGTGGCCCTGCCACGTCCGCCACTTGCATTGCCACT GTTTAGTACTCTGAGAAACATGATCCCAGGATCTCAGACCGCGGCCGGTA GTGGAGGAGGGGGGGGCAAGAGAGCAGCGGTGGAAGTACTACCACACGAG AACCGCAGTCCATCCCCGGGGCATGAGAGCAACAAACAGCCGCGGACCGC CGGCCGCGGCATATCCGCCAGCGGGTCGACGGGGGGCAGGCCAAAAGGGC ACCTGGCACAACAATCCAAAAGCTGCCATACATGTAGAAACAATAGACCC ACGGACGACGGTAGGCATGCTTGCCTGGGCGAGGGCGAGGGGTGCCACTA CTGGCTGTGCCGGAAATGTGTGTGGAAGTGGCAGCAAACGTCTGGACTGG CGGGGGGGTTCCGGTGCTGCCTACACGGAGGGAACCGAGAGTGGTGCGGA TGCCAGAGGTGAGCATTTTGTTTTTGGCGATGACGCAACAGGAAACCCCC ATCACATTCCGAATGATACAGTAAGAGGCAGATAGATATAGGCATACATA CCCTCTTTCATGAAATAGGCTGAGATTTCAAGAGACCCAAAGAGTCAAGA GATCCAAAGAGAGAGGGGAGGTTTGACTTGGACATGGACAACAGCGTTGA GATATAGACTCCAAACTATAAGGTAGAGTTCAGGAGCTGATGTGCGAATT AGATATTCCAGGGAACATGGGCAACCGGTTGAAGTAGTAAAAGCCTTCCT AGACAACCATGCAACGGTTGAAGTCCCGAACTAACCGTGGGGTATAATTG AGTAAATGGAGGGTTTGGTACTGCTGGGTATGCATGCGCGAAGTTAGCAA GGGTAGGATTAGTGCCACTACGAAGTCGTTTTTGCTGTTCTTCACCCGCG AAGCCTTCAATCCCTGCAATGAACCCTACTTGTATTCTTAACTTTGTACA AGGACTGAGGGCACGAATTGACAGTACCCACCCTTGCCTAATCTAGGTTA GCTACCCATCCAACCTATATCCCGCCTCCCCCCCCCTTTGCCTATCACGC TACTCTCACCGCCCACCCTAGGTTCGGGGCCAGGAAAGGGCTCCCTCCGG TGCTGGAGCGATGTAAGGCAGCGCAGAATCGCCGTGTCAGTACGGACGTG TACGCGTTCCCGACTCGAACAGCTACAAGCCCGACGGCCGCAACCACGAC TCCCAGTTCCACGTCAACCTCTGGGACGGGTACGACTTACTCCGTGTGCG CATCCAACAGCCAAAACCGGGTTGCGGTGATCAAGGCTGGTGACGAGTTC ATGTGCTCGCGGAACAACTGCCGACTGTGAGCAATAGACGTCGGAGCTGT CGTTGCTGCAAGCTTGGCGTATACTTGTAGGCGCGTAGACGTGCAGATAA TAGAACCACTTGCTCGGCGGGTTGACCGAAAAATTCCGTGCGCGTTCATC ACCCAGAATGAAGTATCTTCTCTCAAACCCCAGCACGAACACATCGTCCT CCGAGCCGCCCATTTGAATTTCTGAACGCCAAACGGTCTCACACGCCAAA CTCCGCCGCCTCTTTCTGTCAGGGTCGAGAATCTCAGCTCCGCAGGCGCT GGTGACACGAACTCTGCACTACCAGCTCGCTGCCCTCATGCAGAGGTCGT GCACACCGAACTGATGTCATCTACGGAGATCTCACAAGCGGAAACCCTGT TGTCGGCGGAGGCTTTCCAATGTGCGCTGGCCAAAATACCAGCAGGAACA TTCAACGCAGCCACTGCCGGAGCCATGCGCGCACGCGCCGAACAGGCGGC GAAAGAAGGAGTGCCGTTGCTCGTCGGCATCGGGGACACGAAGTACTTTG CGGTGAGGGACGGCCCCAAATTTAACCGCAGCGTGATTGGAGAGTGGGGG CACGTGAAGTACGAGGAGAGTGGGAGCAAAATGTTCCAGTGCAAGGTGGG TGAAGGTTGAGGTTCGACTTGTGGTTGTATTGCGCCGGCGTGTTTGTAGA TGTTGGGGATAGTTTCGTTGGGGTCAGGGTACCCACACGTGGTGAGCTGT TTAATTACGGAATCGACAGGAATACGAACTGAATCAAAACAACGTCGTCG TATCTTGTTATCTTGTCTTGTACCATATGTTTTTTCTCCGCATGAACCAA TATGTGTCGTACTGTGAGCATGCTGTTGATTGCTACTCCTATTGTACGGA GCCCCAGGTACGGATTACCGGGTGTTGATTGTTTCGTCCTTGACACAAGA CCATTGCTGAAACTGGCTGACACCGTCGCAGCACAACCCAAACGCCGAGC TTAATTACTGCTGATGTTGCTTTTCGCTGCCGTTTCTGTTTTTTCGTTGT GGCCCTTCATGAAGGCCAACAACGGTAACCCTTGTGGTGACAGCATGTCG AGGAAACACACCGGACGTTGTGTTCACGCCGCCATTGTTGCTGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15560:1321..3765+

>mRNA_L-elsbetiae_contig15560.3901.1 ID=mRNA_L-elsbetiae_contig15560.3901.1|Name=mRNA_L-elsbetiae_contig15560.3901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig15560:1321..3765+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCCAGGATCTCAGACCGCGGCCGGTAGTGGAGGAGGGGGGGGCAA
GAGAGCAGCGGTGGAAGTACTACCACACGAGAACCGCAGTCCATCCCCGG
GGCATGAGAGCAACAAACAGCCGCGGACCGCCGGCCGCGGCATATCCGCC
AGCGGGTCGACGGGGGGCAGGCCAAAAGGGCACCTGGCACAACAATCCAA
AAGCTGCCATACATGTAGAAACAATAGACCCACGGACGACGGTAGGCATG
CTTGCCTGGGCGAGGGCGAGGGGTGCCACTACTGGCTGTGCCGGAAATGT
GTGTGGAAGTGGCAGCAAACGTCTGGACTGGCGGGGGGGTTCCGGTGCTG
CCTACACGGAGGGAACCGAGAGTGGTGCGGATGCCAGAGATGATCCCAGG
ATCTCAGACCGCGGCCGGTAGTGGAGGAGGGGGGGGCAAGAGAGCAGCGG
TGGAAGTACTACCACACGAGAACCGCAGTCCATCCCCGGGGCATGAGAGC
AACAAACAGCCGCGGACCGCCGGCCGCGGCATATCCGCCAGCGGGTCGAC
GGGGGGCAGGCCAAAAGGGCACCTGGCACAACAATCCAAAAGCTGCCATA
CATGTAGAAACAATAGACCCACGGACGACGGTAGGCATGCTTGCCTGGGC
GAGGGCGAGGGGTGCCACTACTGGCTGTGCCGGAAATGTGTGTGGAAGTG
GCAGCAAACGTCTGGACTGGCGGGGGGGTTCCGGTGCTGCCTACACGGAG
GGAACCGAGAGTGGTGCGGATGCCAGAGGTTCGGGGCCAGGAAAGGGCTC
CCTCCGGTGCTGGAGCGATGTAAGGCAGCGCAGAATCGCCGTGTCAGTAC
GGACGTGTACGCGTTCCCGACTCGAACAGCTACAAGCCCGACGGCCGCAA
CCACGACTCCCAGTTCCACGTCAACCTCTGGGACGGGTACGACTTACTCC
GTGTGCGCATCCAACAGCCAAAACCGGGTTGCGGTGATCAAGGCTGGTGA
CGAGTTCATGTGCTCGCGGAACAACTGCCGACTGTTCGGGGCCAGGAAAG
GGCTCCCTCCGGTGCTGGAGCGATGTAAGGCAGCGCAGAATCGCCGTGTC
AGTACGGACGTGTACGCGTTCCCGACTCGAACAGCTACAAGCCCGACGGC
CGCAACCACGACTCCCAGTTCCACGTCAACCTCTGGGACGGGTACGACTT
ACTCCGTGTGCGCATCCAACAGCCAAAACCGGGTTGCGGTGATCAAGGCT
GGTGACGAGTTCATGTGCTCGCGGAACAACTGCCGACTGGTCGAGAATCT
CAGCTCCGCAGGCGCTGGTGACACGAACTCTGCACTACCAGCTCGCTGCC
CTCATGCAGAGGTCGTGCACACCGAACTGATGTCATCTACGGAGATCTCA
CAAGCGGAAACCCTGTTGTCGGCGGAGGCTTTCCAATGTGCGCTGGCCAA
AATACCAGCAGGAACATTCAACGCAGCCACTGCCGGAGCCATGCGCGCAC
GCGCCGAACAGGCGGCGAAAGAAGGAGTGCCGTTGCTCGTCGGCATCGGG
GACACGAAGTACTTTGCGGTGAGGGACGGCCCCAAATTTAACCGCAGCGT
GATTGGAGAGTGGGGGCACGTGAAGTACGAGGAGAGTGGGAGCAAAATGT
TCCAGTGCAAGGTGGGTGAAGGTTGAGGTCGAGAATCTCAGCTCCGCAGG
CGCTGGTGACACGAACTCTGCACTACCAGCTCGCTGCCCTCATGCAGAGG
TCGTGCACACCGAACTGATGTCATCTACGGAGATCTCACAAGCGGAAACC
CTGTTGTCGGCGGAGGCTTTCCAATGTGCGCTGGCCAAAATACCAGCAGG
AACATTCAACGCAGCCACTGCCGGAGCCATGCGCGCACGCGCCGAACAGG
CGGCGAAAGAAGGAGTGCCGTTGCTCGTCGGCATCGGGGACACGAAGTAC
TTTGCGGTGAGGGACGGCCCCAAATTTAACCGCAGCGTGATTGGAGAGTG
GGGGCACGTGAAGTACGAGGAGAGTGGGAGCAAAATGTTCCAGTGCAAGG
TGGGTGAAGGTTGA
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