mRNA_L-elsbetiae_contig15550.3898.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15550.3898.1
Unique NamemRNA_L-elsbetiae_contig15550.3898.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15550.3898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15550contigL-elsbetiae_contig15550:2898..4062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.2903028-CDS-L-elsbetiae_contig15550:2897..29811622815636.2903028-CDS-L-elsbetiae_contig15550:2897..2981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15550 2898..2981 -
1691683005.7452776-CDS-L-elsbetiae_contig15550:2897..29811691683005.7452776-CDS-L-elsbetiae_contig15550:2897..2981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15550 2898..2981 -
1622815636.3016417-CDS-L-elsbetiae_contig15550:3897..40621622815636.3016417-CDS-L-elsbetiae_contig15550:3897..4062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15550 3898..4062 -
1691683005.754312-CDS-L-elsbetiae_contig15550:3897..40621691683005.754312-CDS-L-elsbetiae_contig15550:3897..4062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15550 3898..4062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15550.3898.1prot_L-elsbetiae_contig15550.3898.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15550 2898..4062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15550.3898.1

>prot_L-elsbetiae_contig15550.3898.1 ID=prot_L-elsbetiae_contig15550.3898.1|Name=mRNA_L-elsbetiae_contig15550.3898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
ILKWARANGCAFFDEEVVASAASGGHLDAVKYCWAQRCPWNEYTTELAAE
GGHLEVLKWCRAKGCPWDEDVVAFAAQEGHMEV
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mRNA from alignment at L-elsbetiae_contig15550:2898..4062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15550.3898.1 ID=mRNA_L-elsbetiae_contig15550.3898.1|Name=mRNA_L-elsbetiae_contig15550.3898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1165bp|location=Sequence derived from alignment at L-elsbetiae_contig15550:2898..4062- (Laminarionema elsbetiae ELsaHSoW15)
ATTCTGAAGTGGGCGAGGGCGAACGGGTGCGCATTCTTCGACGAAGAGGT
GGTGGCGTCGGCGGCCAGCGGGGGCCACCTGGACGCGGTCAAGTACTGCT
GGGCCCAGCGCTGCCCGTGGAACGAGTACACGACCGAGCTGGCGGCGGAG
GGGGGTCACCTGGAGGTGAGCGGTTGCGGCAGCAGCGGGTTCAAGGCACA
AGGTTAAGGTTTACGGCGTGGACAGAACGAAAGCCAATAGGGAGGGGACA
CGAAAAAAAAAAAACGCGAGAACACAAACAATTATCCTGAATGCCTCCAA
TTTTGAAGACAGTTTTTTTTTTTTTTTGAGAGAGGGTGCAACACCTGTGT
TAATTCGAAAACACGTTAAAGAGTTTCTTAGGTTTGATTGACATGATGGA
AACCGGTTTGGCGCGCCTTACGCTGGAAAGATGAAATTCCATTCGTTTCG
GGGGGGGGTTCCATTCGGTTTTGAAAAAACCACCGATCTGAGGAAGCCAA
TGCCGGCTTTTGTCTAAAGCTCTGTGTACGCCCGCAGCCGCTTTGGTATG
CGCCTGCATGTACCGTTTTGTTTGTTGTGGCCTGTTTATACATCTGTGCT
TCGTTTCCTACAGAGTTGTGTGTGTGTGTGCTTATATTTGTTGGGCACTT
GGATGTCTGTTGTCGTTGCCCCGAGGCGTCTTTTTGTGCCCCTAGTTGCC
CAAGCTGGTATCATGCCTCTGCACAGATTCTTCGAAAGAGCGACTACTGC
TGTAAACCAGCCAACAACCACAAAGTATCATCATCATGAGCAGCAGCATC
AGCAGCAGCATCAGCATCAGCATCATGCCTCTGCACAGATTCTTCGAAAG
AGCGACTACTGTGTACACCAGCCAACAAACACAAAGTATTATCATCATGA
GCAGCAGCATCAGCAGCAGCATCAGCATCAGCATCATGCCTCTGCACAGA
TTCTTCGAAAGAGCGACTACTGTGTAAACCAGCCAACAACCACAAAGTAT
TTTCATCATGAGCAGCAGCAGCATCAGCAGCAGCAGAGCAAAGACGCGCA
TCTATTCTGTGCCTCCCGCTCTGTTTCCCAGGTGCTCAAGTGGTGCCGGG
CTAAAGGATGTCCCTGGGATGAAGACGTGGTCGCTTTCGCCGCTCAGGAG
GGGCACATGGAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15550:2898..4062-

>mRNA_L-elsbetiae_contig15550.3898.1 ID=mRNA_L-elsbetiae_contig15550.3898.1|Name=mRNA_L-elsbetiae_contig15550.3898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig15550:2898..4062- (Laminarionema elsbetiae ELsaHSoW15)
ATTCTGAAGTGGGCGAGGGCGAACGGGTGCGCATTCTTCGACGAAGAGGT
GGTGGCGTCGGCGGCCAGCGGGGGCCACCTGGACGCGGTCAAGTACTGCT
GGGCCCAGCGCTGCCCGTGGAACGAGTACACGACCGAGCTGGCGGCGGAG
GGGGGTCACCTGGAGATTCTGAAGTGGGCGAGGGCGAACGGGTGCGCATT
CTTCGACGAAGAGGTGGTGGCGTCGGCGGCCAGCGGGGGCCACCTGGACG
CGGTCAAGTACTGCTGGGCCCAGCGCTGCCCGTGGAACGAGTACACGACC
GAGCTGGCGGCGGAGGGGGGTCACCTGGAGGTGCTCAAGTGGTGCCGGGC
TAAAGGATGTCCCTGGGATGAAGACGTGGTCGCTTTCGCCGCTCAGGAGG
GGCACATGGAGGTAGTGCTCAAGTGGTGCCGGGCTAAAGGATGTCCCTGG
GATGAAGACGTGGTCGCTTTCGCCGCTCAGGAGGGGCACATGGAGGTA
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