mRNA_L-elsbetiae_contig15539.3894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15539.3894.1
Unique NamemRNA_L-elsbetiae_contig15539.3894.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15539.3894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15539contigL-elsbetiae_contig15539:1169..1659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.633471-CDS-L-elsbetiae_contig15539:1168..14801622815635.633471-CDS-L-elsbetiae_contig15539:1168..1480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15539 1169..1480 +
1691683005.2354255-CDS-L-elsbetiae_contig15539:1168..14801691683005.2354255-CDS-L-elsbetiae_contig15539:1168..1480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15539 1169..1480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.646955-UTR-L-elsbetiae_contig15539:1480..16591622815635.646955-UTR-L-elsbetiae_contig15539:1480..1659Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15539 1481..1659 +
1691683005.2445016-UTR-L-elsbetiae_contig15539:1480..16591691683005.2445016-UTR-L-elsbetiae_contig15539:1480..1659Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15539 1481..1659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15539.3894.1prot_L-elsbetiae_contig15539.3894.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15539 1169..1480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15539.3894.1

>prot_L-elsbetiae_contig15539.3894.1 ID=prot_L-elsbetiae_contig15539.3894.1|Name=mRNA_L-elsbetiae_contig15539.3894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
GTKRCGGIPHRGFSAWPSPFYVARHTALCLEEETRTGFFPDHPTQPVKPR
LVLNHGWPTNVRCAYKKIHGAFAYFSLTTSIGYFGALSEETHVRAPGARA
SDG*
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mRNA from alignment at L-elsbetiae_contig15539:1169..1659+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15539.3894.1 ID=mRNA_L-elsbetiae_contig15539.3894.1|Name=mRNA_L-elsbetiae_contig15539.3894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig15539:1169..1659+ (Laminarionema elsbetiae ELsaHSoW15)
GGTACCAAGAGATGTGGCGGTATACCGCACCGTGGCTTCTCAGCTTGGCC
GTCACCGTTTTATGTCGCGCGTCATACCGCTTTATGTCTCGAAGAGGAAA
CGCGAACCGGGTTTTTTCCAGACCACCCAACACAGCCGGTGAAACCTCGT
CTTGTGCTCAACCACGGATGGCCAACTAACGTGCGGTGCGCATACAAAAA
AATCCACGGCGCATTTGCATATTTTTCCTTGACCACGTCCATCGGCTACT
TCGGCGCATTGTCGGAGGAAACACACGTGCGTGCACCTGGTGCACGCGCA
TCAGATGGCTGAGCAGCAGGGAAGGCAGTCTGACAGTCCCGCCGCCAGGC
ACTAACCCCTAACCCTCCTTAAGTCTTAACTGAAGTTGGTCCCGGGGTCT
GACTGAAGATCTACTAACGCGTGTACCTGGTTGATGGTAAGCGGCGATCT
CATTTAGACGCTGGCAAGTGTGGCAGAGAAGCAGGTCATGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15539:1169..1659+

>mRNA_L-elsbetiae_contig15539.3894.1 ID=mRNA_L-elsbetiae_contig15539.3894.1|Name=mRNA_L-elsbetiae_contig15539.3894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig15539:1169..1659+ (Laminarionema elsbetiae ELsaHSoW15)
GGTACCAAGAGATGTGGCGGTATACCGCACCGTGGCTTCTCAGCTTGGCC
GTCACCGTTTTATGTCGCGCGTCATACCGCTTTATGTCTCGAAGAGGAAA
CGCGAACCGGGTTTTTTCCAGACCACCCAACACAGCCGGTGAAACCTCGT
CTTGTGCTCAACCACGGATGGCCAACTAACGTGCGGTGCGCATACAAAAA
AATCCACGGCGCATTTGCATATTTTTCCTTGACCACGTCCATCGGCTACT
TCGGCGCATTGTCGGAGGAAACACACGTGCGTGCACCTGGTGCACGCGCA
TCAGATGGCTGAGGTACCAAGAGATGTGGCGGTATACCGCACCGTGGCTT
CTCAGCTTGGCCGTCACCGTTTTATGTCGCGCGTCATACCGCTTTATGTC
TCGAAGAGGAAACGCGAACCGGGTTTTTTCCAGACCACCCAACACAGCCG
GTGAAACCTCGTCTTGTGCTCAACCACGGATGGCCAACTAACGTGCGGTG
CGCATACAAAAAAATCCACGGCGCATTTGCATATTTTTCCTTGACCACGT
CCATCGGCTACTTCGGCGCATTGTCGGAGGAAACACACGTGCGTGCACCT
GGTGCACGCGCATCAGATGGCTGA
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