mRNA_L-elsbetiae_contig15538.3893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15538.3893.1
Unique NamemRNA_L-elsbetiae_contig15538.3893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A6H5KGM2_9PHAE (Methionine aminopeptidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM2_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 1.600e-130
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 1
Query:    1 DRSTPPXXXPFVDVYTSCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWEE 630
            +R   P    +     SCCTSINEIVCHGIPDSTVLEDGM+VNVDVTVFYKGYHGDCSEMFLVG+VDQAGKDLVQATYDIF AAIAYC+PGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNG+MA+GHTFTIEPLICEGT QNVMWPD WTAATADG+RTAQFEHTFL+TEEGAVPLTAKLD+SPRQFWE+
Sbjct:   61 ERGAYPSPLNYFGFPKSCCTSINEIVCHGIPDSTVLEDGMIVNVDVTVFYKGYHGDCSEMFLVGEVDQAGKDLVQATYDIFNAAIAYCKPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGIMAVGHTFTIEPLICEGTGQNVMWPDKWTAATADGKRTAQFEHTFLLTEEGAVPLTAKLDSSPRQFWEK 270          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: D8LNA9_ECTSI (Methionine aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA9_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 1.610e-124
Identity = 178/210 (84.76%), Postives = 193/210 (91.90%), Query Frame = 1
Query:    1 DRSTPPXXXPFVDVYTSCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWEE 630
            +R   P    +     SCCTSINEIVCHGIPDSTVLEDGM+VNVDVTVFYKGYHGDCSEMFLVG+VDQAGKDLV+ATYDIF AA+AYC+PGRPYSGIGGVIQEMVD RG+STISNFCGHGIGKTFHANPYVLHHKNDVNNG+MA+GHTFTIEPLICEGT QN+MWPD WTAATADG+RTAQFEHT L+TEEGAVPLTAKLD+SPRQFWE+
Sbjct:  212 ERGAYPSPLNYFGFPKSCCTSINEIVCHGIPDSTVLEDGMIVNVDVTVFYKGYHGDCSEMFLVGEVDQAGKDLVKATYDIFNAAMAYCKPGRPYSGIGGVIQEMVDERGFSTISNFCGHGIGKTFHANPYVLHHKNDVNNGIMAVGHTFTIEPLICEGTGQNLMWPDKWTAATADGKRTAQFEHTLLLTEEGAVPLTAKLDSSPRQFWEK 421          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: D8LNA6_ECTSI (Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA6_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 2.240e-108
Identity = 154/194 (79.38%), Postives = 176/194 (90.72%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWEE 630
            SCCTSINEI+CHGIPDSTVLEDGM+VNVDVTVFYKGYHGDCSEMFLVG+VDQAGKDLV+ TYDI++ AIAYC+PGR Y GIGGVI+ +  A+GY+T+ NFCGHGIGK FH NP +LH+KN+ +NG+M  GHTFTIEP+ICEGT ++VMWPD WTAATADGRRTAQFEHTFLMT +GAVPLT KLDTSPRQFWE+
Sbjct:  209 SCCTSINEIICHGIPDSTVLEDGMIVNVDVTVFYKGYHGDCSEMFLVGEVDQAGKDLVKDTYDIWQQAIAYCKPGRHYKGIGGVIENLCTAKGYTTVPNFCGHGIGKLFHTNPNILHYKNNESNGIMKEGHTFTIEPMICEGTAKSVMWPDKWTAATADGRRTAQFEHTFLMTADGAVPLTGKLDTSPRQFWEK 402          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A835YRW9_9STRA (Methionine aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW9_9STRA)

HSP 1 Score: 304 bits (779), Expect = 2.780e-94
Identity = 134/194 (69.07%), Postives = 159/194 (81.96%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWEE 630
            SCCTS+NEIVCHGIPDSTVL++G ++N+DVTVF  GYHGDCSEMF VG+VD A K+L+Q TYD ++ A  +C+PG+ Y  IG VIQE V+ARGY+T+ NFCGHGIG  FH NP +LH+KN+  NGVM +GHTFTIEP+ICEG   NV+WPD WTAAT DG+RTAQFEHTFLM E G  PLT KL TSPRQFWE+
Sbjct:  124 SCCTSLNEIVCHGIPDSTVLKEGDILNIDVTVFLNGYHGDCSEMFCVGEVDDAAKELLQVTYDAWQKAADFCKPGKHYKEIGAVIQEYVEARGYTTVKNFCGHGIGSVFHTNPTILHYKNNEPNGVMRVGHTFTIEPMICEGKPDNVVWPDKWTAATIDGKRTAQFEHTFLMNENGVEPLTGKLQTSPRQFWEK 317          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A6V1URZ5_HETAK (Methionine aminopeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1URZ5_HETAK)

HSP 1 Score: 291 bits (745), Expect = 9.500e-89
Identity = 130/194 (67.01%), Postives = 157/194 (80.93%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWEE 630
            S CTS+NEI+CHGIPDSTVL+DG ++N+DVTV++ GYHGDCSEMF VG+ D A KDLVQ TYD ++ A  +C+PGRPY  IGG+I++ V  RGY+T+ +FCGHGIGK FH NP VLH+KN+   G M  GH FTIEP+ICEGT +NVMWPD WTAATADG+RTAQFEHTFL+T  G   LTAKL  SP+QFWE+
Sbjct:  160 SVCTSLNEIICHGIPDSTVLKDGDILNIDVTVYHGGYHGDCSEMFCVGEPDAAAKDLVQVTYDAWQEAANFCKPGRPYKEIGGIIEDYVTKRGYTTVPDFCGHGIGKVFHCNPNVLHYKNNEPCGKMEPGHVFTIEPMICEGTARNVMWPDKWTAATADGKRTAQFEHTFLLTATGVEALTAKLPDSPKQFWEK 353          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A7S2MMP3_9EUKA (Methionine aminopeptidase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MMP3_9EUKA)

HSP 1 Score: 281 bits (718), Expect = 3.110e-84
Identity = 124/193 (64.25%), Postives = 153/193 (79.27%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWE 627
            SCCTS+NE++CHGIPDS+VL DG +VN+D+T +Y GYHGDCSE FLVG+VD AGK LV+ T+D ++AAI YCQPGRP++GIG VI++ +   GYS++  FCGHGIGK FH NP +LH++N    G M +GH FTIEP+ICEGT ++VMW D WTA T DGRRTAQFEHT L+T  GA PLT +LDTS   FWE
Sbjct:  153 SCCTSVNEVICHGIPDSSVLRDGDIVNIDITCYYGGYHGDCSETFLVGEVDDAGKQLVKVTHDCWQAAIDYCQPGRPFNGIGAVIEDTIKPHGYSSVKEFCGHGIGKVFHTNPNILHYRNK-EPGEMQVGHVFTIEPMICEGTARHVMWNDGWTATTKDGRRTAQFEHTLLITPTGAEPLTGRLDTSNPFFWE 344          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: W7UC07_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC07_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.200e-83
Identity = 124/194 (63.92%), Postives = 153/194 (78.87%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPD-STVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWE 627
            SCCTS+NE+VCHGIPD ST L+DG +VNVDVTV+YKGYHGDCSE F VG+VD+AGK LV+ TYD ++ AI +C+PGRPY  IG +I+E V   G++T+  FCGHG+GK FH  P +LH KN    GVM  GHTFTIEP+ICEGT+++++WPD WTA TADGRR+AQFEHT L+T  G   LT +L TSP+ FWE
Sbjct:  233 SCCTSLNEVVCHGIPDVSTKLQDGDIVNVDVTVYYKGYHGDCSETFCVGNVDEAGKRLVKVTYDAWQKAIEFCKPGRPYKDIGAIIEEYVTKEGFTTVREFCGHGVGKVFHTTPNILHFKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPDKWTATTADGRRSAQFEHTLLITPSGVEALTGRLPTSPKFFWE 426          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A7S2FNH4_9STRA (Methionine aminopeptidase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNH4_9STRA)

HSP 1 Score: 273 bits (697), Expect = 6.580e-83
Identity = 122/198 (61.62%), Postives = 157/198 (79.29%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDST-VLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLD-TSPRQFWEEKS 636
            S CTS+NE++CHGIPD+T +LE+G +VN+DVT+++ GYHGDCSEMF VG+VDQAGK+L+Q TYD +  A+ +C+PGRPY  IGG+I++ V   G+ST   FCGHGIG  FH  P +LH++N   NGVM  GHTFTIEP+I EGTD+ + WPD WTA TADG R+AQFEHT LMTE+G VPLTAK++ +S  QFWE+ +
Sbjct:   59 SVCTSVNEVICHGIPDTTSLLEEGDMVNIDVTIYFNGYHGDCSEMFTVGEVDQAGKELLQVTYDSWVKAMDFCEPGRPYKDIGGIIEDYVSQFGFSTTRQFCGHGIGSIFHTTPNILHYRNKEPNGVMQPGHTFTIEPMINEGTDKVLFWPDKWTATTADGGRSAQFEHTLLMTEDGVVPLTAKVEGSSMEQFWEKST 256          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A7S2BSQ1_9STRA (Methionine aminopeptidase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSQ1_9STRA)

HSP 1 Score: 273 bits (697), Expect = 7.380e-82
Identity = 122/198 (61.62%), Postives = 157/198 (79.29%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDST-VLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLD-TSPRQFWEEKS 636
            S CTS+NE++CHGIPD+T +LE+G +VN+DVT+++ GYHGDCSEMF VG+VDQAGK+L+Q TYD +  A+ +C+PGRPY  IGG+I++ V   G+ST   FCGHGIG  FH  P +LH++N   NGVM  GHTFTIEP+I EGTD+ + WPD WTA TADG R+AQFEHT LMTE+G VPLTAK++ +S  QFWE+ +
Sbjct:  134 SVCTSVNEVICHGIPDTTSLLEEGDMVNIDVTIYFNGYHGDCSEMFTVGEVDQAGKELLQVTYDSWVKAMDFCEPGRPYKDIGGIIEDYVSQFGFSTTRQFCGHGIGSIFHTTPNILHYRNKEPNGVMQPGHTFTIEPMINEGTDKVLFWPDKWTATTADGGRSAQFEHTLLMTEDGVVPLTAKVEGSSMEQFWEKST 331          
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Match: A0A7S0EDD9_9EUKA (Methionine aminopeptidase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EDD9_9EUKA)

HSP 1 Score: 270 bits (690), Expect = 7.630e-81
Identity = 116/197 (58.88%), Postives = 154/197 (78.17%), Query Frame = 1
Query:   49 SCCTSINEIVCHGIPDSTVLEDGMVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQPGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVNNGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMTEEGAVPLTAKLDTSPRQFWEEKSQ 639
            SCCTS+NE++CHGIPDS+VL DG +VN+D+T +Y GYHGDCSE F+VG+VD+AGK LV+ T+D ++AAI YC+PG+PY+GIG +IQ+ +   GY+++  FCGHGIG  FH NP +LH+KN+   G M +GH FTIEP+ICEGT ++VMW D WTA T DG R+AQFEHT L+ + G   LTA+L TSP  +WE + +
Sbjct:  140 SCCTSVNEVICHGIPDSSVLRDGDIVNIDITCYYGGYHGDCSETFMVGEVDEAGKKLVRVTHDCWQAAIDYCKPGQPYNGIGKIIQDYIQPHGYTSVKEFCGHGIGTIFHTNPNILHYKNN-EPGTMEVGHVFTIEPMICEGTSKHVMWGDDWTATTRDGGRSAQFEHTLLVNDTGVEVLTARLPTSPPLWWEAEGK 335          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15538.3893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGM2_9PHAE1.600e-13087.62Methionine aminopeptidase n=1 Tax=Ectocarpus sp. C... [more]
D8LNA9_ECTSI1.610e-12484.76Methionine aminopeptidase n=1 Tax=Ectocarpus silic... [more]
D8LNA6_ECTSI2.240e-10879.38Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID... [more]
A0A835YRW9_9STRA2.780e-9469.07Methionine aminopeptidase n=1 Tax=Tribonema minus ... [more]
A0A6V1URZ5_HETAK9.500e-8967.01Methionine aminopeptidase n=1 Tax=Heterosigma akas... [more]
A0A7S2MMP3_9EUKA3.110e-8464.25Methionine aminopeptidase n=1 Tax=Haptolina brevif... [more]
W7UC07_9STRA1.200e-8363.92Methionine aminopeptidase n=1 Tax=Nannochloropsis ... [more]
A0A7S2FNH4_9STRA6.580e-8361.62Methionine aminopeptidase n=1 Tax=Dictyocha specul... [more]
A0A7S2BSQ1_9STRA7.380e-8261.62Methionine aminopeptidase n=1 Tax=Dictyocha specul... [more]
A0A7S0EDD9_9EUKA7.630e-8158.88Methionine aminopeptidase n=1 Tax=Phaeocystis anta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15538contigL-elsbetiae_contig15538:470..3960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.3
Seed ortholog evalue8.8e-90
Seed eggNOG ortholog2880.D8LNA9
KEGG koko:K01265
Hectar predicted targeting categoryother localisation
EggNOG free text desc.metalloexopeptidase activity
EggNOG OGsCOG0024@1,KOG2738@2759
EC3.4.11.18
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Ec32 ortholog descriptionMethionine aminopeptidase
Ec32 orthologEc-04_004530.1
Exons4
Model size2151
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15538.3893.1prot_L-elsbetiae_contig15538.3893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15538 1979..3843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5319343-UTR-L-elsbetiae_contig15538:469..19781622815635.5319343-UTR-L-elsbetiae_contig15538:469..1978Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15538 470..1978 -
1691683005.1775482-UTR-L-elsbetiae_contig15538:469..19781691683005.1775482-UTR-L-elsbetiae_contig15538:469..1978Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15538 470..1978 -
1622815635.5991685-UTR-L-elsbetiae_contig15538:3843..39601622815635.5991685-UTR-L-elsbetiae_contig15538:3843..3960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15538 3844..3960 -
1691683005.2232962-UTR-L-elsbetiae_contig15538:3843..39601691683005.2232962-UTR-L-elsbetiae_contig15538:3843..3960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15538 3844..3960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5448065-CDS-L-elsbetiae_contig15538:1978..21421622815635.5448065-CDS-L-elsbetiae_contig15538:1978..2142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 1979..2142 -
1691683005.1875875-CDS-L-elsbetiae_contig15538:1978..21421691683005.1875875-CDS-L-elsbetiae_contig15538:1978..2142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 1979..2142 -
1622815635.562149-CDS-L-elsbetiae_contig15538:2451..25801622815635.562149-CDS-L-elsbetiae_contig15538:2451..2580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 2452..2580 -
1691683005.1960208-CDS-L-elsbetiae_contig15538:2451..25801691683005.1960208-CDS-L-elsbetiae_contig15538:2451..2580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 2452..2580 -
1622815635.5755267-CDS-L-elsbetiae_contig15538:2987..31111622815635.5755267-CDS-L-elsbetiae_contig15538:2987..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 2988..3111 -
1691683005.2051027-CDS-L-elsbetiae_contig15538:2987..31111691683005.2051027-CDS-L-elsbetiae_contig15538:2987..3111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 2988..3111 -
1622815635.5873609-CDS-L-elsbetiae_contig15538:3735..38431622815635.5873609-CDS-L-elsbetiae_contig15538:3735..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 3736..3843 -
1691683005.2154853-CDS-L-elsbetiae_contig15538:3735..38431691683005.2154853-CDS-L-elsbetiae_contig15538:3735..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15538 3736..3843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15538.3893.1

>prot_L-elsbetiae_contig15538.3893.1 ID=prot_L-elsbetiae_contig15538.3893.1|Name=mRNA_L-elsbetiae_contig15538.3893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
MVVNVDVTVFYKGYHGDCSEMFLVGDVDQAGKDLVQATYDIFKAAIAYCQ
PGRPYSGIGGVIQEMVDARGYSTISNFCGHGIGKTFHANPYVLHHKNDVN
NGVMALGHTFTIEPLICEGTDQNVMWPDLWTAATADGRRTAQFEHTFLMT
EEGAVPLTAKLDTSPRQFWEEKSQ*
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mRNA from alignment at L-elsbetiae_contig15538:470..3960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15538.3893.1 ID=mRNA_L-elsbetiae_contig15538.3893.1|Name=mRNA_L-elsbetiae_contig15538.3893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3491bp|location=Sequence derived from alignment at L-elsbetiae_contig15538:470..3960- (Laminarionema elsbetiae ELsaHSoW15)
GATCGATCCACGCCCCCCCCCCCCCCCCCGTTCGTCGATGTGTACACAAG TTGCTGCACGAGCATCAACGAGATCGTTTGCCACGGGATCCCGGACAGCA CGGTGCTGGAGGACGGCATGGTCGTGAACGTGGACGTGACCGTGTTCTAC AAGGGCTACCACGGGGACTGCTCCGAGATGTTCTTGGTCGGGGACGTGGA CCAGGCCGGCAAGGACCTCGTGCAGGTGGAAATGGTAGATGCACGTGATC CTCACGTATGGGTGTTTGTTTATTAATATGTACTTCTATGTAGTAGCAGA CTTTCATGAACATGGAGACGAACTGGTCGAAAAGACGCCATGATTGTTTT GGAAAGCGGGGTGACTGACCATCACGTTGCTTGTTGCTTCTTTTTCACCC GATTTACCAGAGGTGTACTTGAGGAAGGTATGTAGTATGTATGTACGTAT CGACAAAAAATCGAGCCACTCTTTTCCCGGAGGCCTTGATTGGAGATCGA CCCTGTCTTGCGTGGTGAGCAGCTCTATGCGGCTTCGCCACTTCGCCCCC CGCGCTCTGCCCTGTTGCTGTTGCTGCTGCTGCTCTCTACCTCACGCCAT CTCACCGAGGGACGACTCATCTCGACTTGTCGTCAGCGTGGTCGCGATGT CGGGGGTTACGGCATTTGGGCACGTGCCGGCCCCTCTTAGGTTGTTGGAT CTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTACCTGCCTTCTC GAGTGTGCTATAGGGGGGGCTGGAGCCGCTTTTGTCGTTGCGAATGCGAA GCGCTGAATTTTGCCTCCCCCCTACCCCCCCCTCCCCGATGGTCTGCAGG CGACGTACGATATATTTAAGGCAGCCATCGCCTACTGCCAGCCCGGGCGG CCATACTCGGGCATCGGGGGGGTCATCCAGGAGATGGTGGACGCCAGGGG CTACAGCACCATCTCAAACTTCTGTGAGATAATGATGCACGTTGGTGCCT TGCTGGGGAGCGTGTTGCGCGTGGGTGGTACGGAGGTTGGCTGTGAATAC GTTCATGAGGTACAGCAGTTGCTGGCCTAGTTTGTTGATAGCCGACGCCG TGTTGGTGCACATCGCCTTAAACGTGGTGAAGATTGCGCGAGAATGAACG CGCTCGTTGTGTGGTTCAGAACAAAAATATGTCTTTTAGAAGATAAGCAG CGGTGCTGTTTCGACTTGATTGTAACGGCGGCATCCCCTTTATTTCGTCT ACGACCACGATGATGCTCTCTTCCTCGCGAGCACGATTGGAGTCCACCCC TCCCCTCCGCCGAGGTGTCAAACAAGTGAGACGTTTTATGCATCTCGGGC ATTTAATATTGTTTACACCGAATTCCGCAGGTGGACACGGCATCGGGAAA ACGTTTCACGCCAACCCTTACGTCCTGCACCACAAGAACGACGTCAACAA CGGCGTCATGGCGCTTGGGCACACGTTCACGATAGAACCGTTGATATGCG AGGGGACCGGTGAGACAACTGCTGTGCTGCGCTTGCGTTTTGCATGACTG CGACATTTGCAGGCGATACAAGACTTTCATGTGCGGGCGGGCACCCGCCA GGTCGTAGCACTCCCCCCCTTCCTCTTTTTCCCGTCGTGTTTATTGTCTT GATGCCCCTCGCAGCAGCGGCGGCGTCCTGCCCCTGAATCCCTCCTATTA TTGCACGCGCAGTCTGGCGGTTCGACGTCTGACTGCCGCGATACACAAAA GCGAGACGACTGACATCCACTCGGCTCTGTGCTGCAACACCCGCGGGCGT CTCCTGTGCTCGTTGCAGACCAAAACGTGATGTGGCCGGACTTGTGGACG GCGGCGACGGCGGACGGCAGGAGGACCGCGCAGTTCGAGCACACCTTTCT CATGACTGAGGAGGGCGCCGTGCCGTTGACGGCCAAGCTTGACACCTCTC CAAGGCAATTTTGGGAAGAAAAGTCACAATAATAGTCACAACAAATCACC GATTGAGTGTCGTTTCGAAATCATTTGATGTAGGTATGTACAACGAGGCG TTTGTAGGCAGCCCCAAAGCTCCCGAGAAATATCGTCGAGCGTGCTGAGA GGACAACGAGGACGCAGCCAACGGTGCACCTCCATCAACGGCGAGAGCTC CTTCGCTCGATCCACGATCCCGTCGGCCGTATATACCAGCACGTGCAAAC ATCGCCGACGCCCCTGGTAAAAAGTGTTGCCCGTCTCTTCGAGAGCGCGC AGACCTTCCTAGCTATCATCACCGAGCCCCTGGCCGCGATCTGCAAGCAG GACTTCACTTGCTGCTCCACACATGGAGCATACATGAAGCAACACGCGTT CTCCTGCCGGGATCGCGGCCAAGAACCCGGCGATGACGGACAGGAGATTT GCGCTTTCCAACAGATGGGCACCACCTTGGCTGCGAACAAAGCTTGCTAT TTAGGGCGCTGCCGATGTATGCATGTGCTGGTATGTAGGGCCAACGGGAT CGAGGATCGAGTCAAGGAGCCGCCGATGGGGGCACCGCTGGCGGTTGTCT TCGTCGCCTCTCCGAGCGTGCCGAAGTGGACGGCGCCTTGTGCTGGCTTT TGGTGGTGGCCTCGGCAACCCTCCGAGCCGCCCGGGAAGTCGTTTCCCAG CGCTCGTTGGAGTCGGCCGGGAGCGGTTCGGGCGCCGCAGCCGGCGAGTT TGGTGTTGGTGCGCGGCGCGGGCTCTGACTGCGGGGCGGTCTCCGAGTCC GTGTTGCGAGGGCGCGCCCCCGCGTTCTTATTTGTTCCTGATTTATGTTT TGGCATGGGGGATCGCGCGAGAGATCAATCGACTTTGTCTTGCGTGTGCT GTACGCTGCAGATAAATGCCCTCAACTCCTGAGAGACGAATTAGGTCCCG CGTTGCAGTTTCTTCGGTTGTGTAATGCGGGCGAGGAAGTACAAAGTGCT CACGCTCAACACAAATGGCCGAGGCCAAAGTTGTCTGAAATTGTTGAAAG TATTCCGCGTGTCATACACTGATCTGTTGGGCAGGAGCGAGGAGATCGCT CCGACTGTGGACGGTAGAGCATTTGTGTATTTGCGGTTCCGGGGTTTTTC GGCCCAGTTAAAGTAAACAAGGGACCGATACAATTGTCGATCGGCGAGAT GCGCTTTCCCCGCACGTGTACAAGCGAACGTACGAACTGATGCCGGGTAC TGGTGTAAGGATTATGTTGTCTCCCAATGGTTTGGTTTGAAAGCGCGACG AACATCGGTTCTCGTACAGCAGCACCGGCCCGCTAGTAAGAAAGTCAGCC TGGGATTTTCAAATTATGAAGAAAGTGCCCAGCCTGGGCGGCGAGTGCCA CGCTTAATCCTGTACGCTACATAGAAGAAAGTGCTACGCTCGACTCCCAA CCCAATAAGGACTAGACTAGTATACTTCTACTGCTGTATGCCTACCTAGA TATACCACGCGAGATGCGACTGGTGCATTAAATAGTATTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15538:470..3960-

>mRNA_L-elsbetiae_contig15538.3893.1 ID=mRNA_L-elsbetiae_contig15538.3893.1|Name=mRNA_L-elsbetiae_contig15538.3893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig15538:470..3960- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGTGAACGTGGACGTGACCGTGTTCTACAAGGGCTACCACGGGGA
CTGCTCCGAGATGTTCTTGGTCGGGGACGTGGACCAGGCCGGCAAGGACC
TCGTGCAGATGGTCGTGAACGTGGACGTGACCGTGTTCTACAAGGGCTAC
CACGGGGACTGCTCCGAGATGTTCTTGGTCGGGGACGTGGACCAGGCCGG
CAAGGACCTCGTGCAGGCGACGTACGATATATTTAAGGCAGCCATCGCCT
ACTGCCAGCCCGGGCGGCCATACTCGGGCATCGGGGGGGTCATCCAGGAG
ATGGTGGACGCCAGGGGCTACAGCACCATCTCAAACTTCTGCGACGTACG
ATATATTTAAGGCAGCCATCGCCTACTGCCAGCCCGGGCGGCCATACTCG
GGCATCGGGGGGGTCATCCAGGAGATGGTGGACGCCAGGGGCTACAGCAC
CATCTCAAACTTCTGTGGACACGGCATCGGGAAAACGTTTCACGCCAACC
CTTACGTCCTGCACCACAAGAACGACGTCAACAACGGCGTCATGGCGCTT
GGGCACACGTTCACGATAGAACCGTTGATATGCGAGGGGACCGGTGGACA
CGGCATCGGGAAAACGTTTCACGCCAACCCTTACGTCCTGCACCACAAGA
ACGACGTCAACAACGGCGTCATGGCGCTTGGGCACACGTTCACGATAGAA
CCGTTGATATGCGAGGGGACCGACCAAAACGTGATGTGGCCGGACTTGTG
GACGGCGGCGACGGCGGACGGCAGGAGGACCGCGCAGTTCGAGCACACCT
TTCTCATGACTGAGGAGGGCGCCGTGCCGTTGACGGCCAAGCTTGACACC
TCTCCAAGGCAATTTTGGGAAGAAAAGTCACAATAAACCAAAACGTGATG
TGGCCGGACTTGTGGACGGCGGCGACGGCGGACGGCAGGAGGACCGCGCA
GTTCGAGCACACCTTTCTCATGACTGAGGAGGGCGCCGTGCCGTTGACGG
CCAAGCTTGACACCTCTCCAAGGCAATTTTGGGAAGAAAAGTCACAATAA
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