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Homology
BLAST of mRNA_L-elsbetiae_contig15532.3891.1 vs. uniprot
Match: D7FHD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD6_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 1.120e-11 Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 4 ATDGVYPVEYTLQHPGRYQMVVTDASGRFVGESSRVVEAVRVDAQASCSGETRDGLCXXXXXXXXXXMVP------QPEIQALVG--RQEECAGNDPALDRLTGTLDVSYGGSRAVSTPIDATAG 354
+++GVYP++YTL+ PGRY M +TD +G+ + SRVV+A + +AS S T GL +V QPE+QAL G GN + L T +++YGG R + P +A+AG
Sbjct: 540 SSNGVYPIQYTLRIPGRYDMRITDVAGQVIDGGSRVVQATSMRTKASLSTATGTGLHGGIAGKRLRVVVQARVIADQPEVQALSGWTAGNGSNGNGTCVGDLPLTFELAYGGERTLPIPFEASAG 664
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 7 |
| Model size | 1165 |
| Cds size | 657 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815635.3358874-UTR-L-elsbetiae_contig15532:1089..1176 | 1622815635.3358874-UTR-L-elsbetiae_contig15532:1089..1176 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 1090..1176 + |
| 1691683005.06562-UTR-L-elsbetiae_contig15532:1089..1176 | 1691683005.06562-UTR-L-elsbetiae_contig15532:1089..1176 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 1090..1176 + |
| 1622815635.349361-UTR-L-elsbetiae_contig15532:1562..1724 | 1622815635.349361-UTR-L-elsbetiae_contig15532:1562..1724 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 1563..1724 + |
| 1691683005.07435-UTR-L-elsbetiae_contig15532:1562..1724 | 1691683005.07435-UTR-L-elsbetiae_contig15532:1562..1724 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 1563..1724 + |
| 1622815635.362058-UTR-L-elsbetiae_contig15532:1936..2060 | 1622815635.362058-UTR-L-elsbetiae_contig15532:1936..2060 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 1937..2060 + |
| 1691683005.0823832-UTR-L-elsbetiae_contig15532:1936..2060 | 1691683005.0823832-UTR-L-elsbetiae_contig15532:1936..2060 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 1937..2060 + |
| 1622815635.3767893-UTR-L-elsbetiae_contig15532:2223..2358 | 1622815635.3767893-UTR-L-elsbetiae_contig15532:2223..2358 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 2224..2358 + |
| 1691683005.0909643-UTR-L-elsbetiae_contig15532:2223..2358 | 1691683005.0909643-UTR-L-elsbetiae_contig15532:2223..2358 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15532 2224..2358 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815635.3890347-CDS-L-elsbetiae_contig15532:2358..2481 | 1622815635.3890347-CDS-L-elsbetiae_contig15532:2358..2481 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 2359..2481 + |
| 1691683005.099003-CDS-L-elsbetiae_contig15532:2358..2481 | 1691683005.099003-CDS-L-elsbetiae_contig15532:2358..2481 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 2359..2481 + |
| 1622815635.399292-CDS-L-elsbetiae_contig15532:2798..2912 | 1622815635.399292-CDS-L-elsbetiae_contig15532:2798..2912 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 2799..2912 + |
| 1691683005.1066608-CDS-L-elsbetiae_contig15532:2798..2912 | 1691683005.1066608-CDS-L-elsbetiae_contig15532:2798..2912 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 2799..2912 + |
| 1622815635.4147034-CDS-L-elsbetiae_contig15532:3297..3435 | 1622815635.4147034-CDS-L-elsbetiae_contig15532:3297..3435 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 3298..3435 + |
| 1691683005.1227214-CDS-L-elsbetiae_contig15532:3297..3435 | 1691683005.1227214-CDS-L-elsbetiae_contig15532:3297..3435 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 3298..3435 + |
| 1622815635.4254112-CDS-L-elsbetiae_contig15532:3722..4004 | 1622815635.4254112-CDS-L-elsbetiae_contig15532:3722..4004 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 3723..4004 + |
| 1691683005.1323743-CDS-L-elsbetiae_contig15532:3722..4004 | 1691683005.1323743-CDS-L-elsbetiae_contig15532:3722..4004 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15532 3723..4004 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15532.3891.1 >prot_L-elsbetiae_contig15532.3891.1 ID=prot_L-elsbetiae_contig15532.3891.1|Name=mRNA_L-elsbetiae_contig15532.3891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MPLLNDIAAKTPVMRSVEVNKKKPEERLFRHIFSLISGQHVVLVGIGLVI
GMVVMLCMAIVGAVRRPGNAQRTRPRQLVVTLESCRRSASSLQLRLRVYG
SPCNPRTITVHRSAREARQRPLSPEGEYLVAMMVQIRLAPVPSGFGVLAS
QASLIMHRETSARAGMLDSSRPTASHASLILRAGQQCIITGMGSGSNRRR
ACPTRWQLQTTSQVLFSA* back to topmRNA from alignment at L-elsbetiae_contig15532:1090..4004+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig15532.3891.1 ID=mRNA_L-elsbetiae_contig15532.3891.1|Name=mRNA_L-elsbetiae_contig15532.3891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2915bp|location=Sequence derived from alignment at L-elsbetiae_contig15532:1090..4004+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCTACCGATGGCGTGTACCCTGTCGAGTACACCCTGCAACACCCGGG
GCGCTATCAGATGGTTGTCACGGATGCGAGTGGAAGGGTGAGAACTCGAG
CACATCGGCTTTAGGCTTACTTGTATTCCCAGCCTAGGTAGATTGGCGAC
TTTCGAAGGGCACAGCGCCGATGGCGTGTCCTGAGAGAACTTGGCCTCGT
TGCGAATCGAATGTGGATTTGTGCCACTCTAGCAAAATGCATCCTACGGT
GTTAAAGTGGGCACCCATAAAGCCCTGATGCTTTATCGGCCAATTCCCTC
TTTTTCTGACAACTACATACATCTCCCGCAGGGAAAATACGCTTTCAAAC
CACGGTTGTGCCAGACGAAGCCATTGTGGTTTCGTTCTCCTCTCACATCG
TGCTTCTCTCTCTACACGTTGCATCTAACACGCGTGTGGTTGCTTGCTCC
TTGGCGTTCCGTCATCGGCTTAGTTTGTCGGTGAGAGTTCTCGAGTTGTC
GAAGCAGTACGCGTGGATGCCCAAGCTTCCTGCTCAGGTGAAACGAGAGA
CGGTCTCTGTGGCGGAAATGCGAGGGATCAACTGAGCGGCATGGTACCGC
AGCCGGAGATACAGGCACTTGTTGGGCGGCAAGAGGTGAGCTGCGTCGCG
GAGCTTGGCTAGAAGGGGCAGTGAAAACACGCCAGCCGCACCAGACTGCC
TGTCGCTTGCCCTCGGCAGCCACTTCCAAACAGCAGTCTGTGCAGTATTC
GTCAACACACTTCAAGAAAAGTATCACCGACAACAAGCCCTCCCCCTCCG
GTGCATTGAATCGCCGCATGCCCCACTCTGAATACATATTTTTGAAGGAG
TGTGCGGGGAACGATCCGGCTCTCGACCGCCTGACTGGAACGCTCGACGT
CTCCTACGGCGGCAGCCGCGCGGTTTCTACACCCATCGACGCAACTGCAG
GAAACAAAGGCCCTCGGGGTGGTAAGTACACGGCTTGGTGCAATCAACGG
GGGGGAAACAAAGAACAAGAGACGCCTTACATCGAGAAAAGGCCCGACAC
CTATTGAAGCATGTATCGGTCCTGTGTCTTACTTCTCTCTGACCCCTTCC
CTGCTCCTGTCTGCTTTCCGACCTTGCTCTACAGGGCTGGAGGCCGTTCC
CTCTGCGTCTACAGATCTACTTCCTGTGCACGTGAGTGTCACTCTGCCAG
AGGACTCCTCACTACACCTAGGTGCCGCCTTTCGCCTCCGGGGTGGACCT
GGAAGAGAAGGTACTCGGCATGCCGCTGTTGAACGACATCGCCGCTAAGA
CCCCGGTCATGCGATCGGTTGAGGTGAACAAGAAGAAGCCCGAGGAGCGT
CTGTTTCGCCATATTTTCAGCCTCATCAGCGGGCAGCACGTGGTGAGTGG
TATACTATCTATATAGCAGAATGTCGCTGCCCGCCCTTCCCGCGTTTTGG
TTTTCTGACGTTATGTCTGCGGCATGAAGAAGATTAAACGAACTCTCCGT
ACAGCAGGGCAGCACTATCGTTAATGCGTTCATGGTTCGGCTGTACGCCG
GTGAGTTTGTTCCACGTTTCGCAGTACCCGGCAAATAGTTCTCAAGTTCA
CGGCCTTTCGTGGGAGGCCCGTATTTATAGGTTGTTCATTCAATTTTGCT
GCACTCCTGTTTCTCCTGTGGTGCGGTTGCTGCTGTATTTCTCGGTCGCT
GCTTTTCAGGTCCTCGTTGGCATCGGTCTGGTCATCGGCATGGTGGTAAT
GCTGTGCATGGCGATCGTGGGTGCCGTGCGCAGACCAGGCAACGCACAGA
GGACCAGACCTCGCCAGCTGGTGGTACGGCACTACATACGGAAGTAGTTT
TGTCTTTTTGCTTGGGCGCGTACAAAGAAGGGTATCTATACTTTGTATGC
GCGTTCGATTAGCCTCTTGTTCGTGTCGCTTCCCGACCTGCAATGCACCC
TCATATCTCACATAGTCTAGAGCTCATCTGTTGCAGTTCACCACCAGGTT
TGCTTCCCTTCGTGCCACTTGCCTGGCTGACAAAAGCTAAACATGCTTCA
ACCGGGCTTACCAGAGTAAGCGCGAAACAGCACCATCGCGATTTATCGCA
CGCCGTGGCTATTTTGGCTCTCTCTGCTACTGTGCGGTCGCCACCCATCG
AAGATGGCCAATTATACTGTATCATGATACCTTGACGCCTCTATCTACCT
TCTCGCAGGTAACACTAGAAAGCTGTCGACGATCCGCGTCGTCGTTGCAG
CTCCGCTTGCGGGTATACGGCTCGCCATGCAATCCGCGAACTATCACTGT
TCATCGCTCTGCGCGCGAAGCTCGTCAGCGGCCGCTCTCGCCCGAGGTAA
GCGCGAAACAGCACCATCGTGATTTACCACACGCCGTGGCTATTTTAGCT
CTGCTACTGTGCGATTGCCGCCCATCGAAGATGGCCAAATACTGTATCAT
GATTACCTTGACGCCTCTATCTACCTTCTCGCTGGTGTAGCTGAACGTTT
CAAGGCTTCCGCCTGTCCAGCAGTGGATGAGTGGTAGGTGCGTAACGTTT
GTTTGTGTGTGGTGAAAAAACCTTGCTCTTCTTTGGTTCGGGCTCTTCGT
TCTCGATCATCTTACCTTTGTTCCGTGTAATAGGGAGAATATCTAGTGGC
CATGATGGTACAGATCAGGCTGGCACCCGTTCCGAGCGGATTTGGAGTGC
TCGCTAGCCAAGCGTCCTTGATCATGCACCGCGAGACCAGCGCCCGAGCC
GGCATGCTGGATTCCAGTCGTCCAACGGCTAGCCACGCCTCCCTCATCTT
ACGGGCTGGCCAGCAATGCATCATCACCGGCATGGGCTCCGGTTCGAATC
GACGGCGAGCGTGCCCAACAAGATGGCAGCTTCAAACGACGTCACAGGTA
CTTTTTTCTGCTTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig15532:1090..4004+ >mRNA_L-elsbetiae_contig15532.3891.1 ID=mRNA_L-elsbetiae_contig15532.3891.1|Name=mRNA_L-elsbetiae_contig15532.3891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig15532:1090..4004+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCTGTTGAACGACATCGCCGCTAAGACCCCGGTCATGCGATCGGT
TGAGGTGAACAAGAAGAAGCCCGAGGAGCGTCTGTTTCGCCATATTTTCA
GCCTCATCAGCGGGCAGCACGTGATGCCGCTGTTGAACGACATCGCCGCT
AAGACCCCGGTCATGCGATCGGTTGAGGTGAACAAGAAGAAGCCCGAGGA
GCGTCTGTTTCGCCATATTTTCAGCCTCATCAGCGGGCAGCACGTGGTCC
TCGTTGGCATCGGTCTGGTCATCGGCATGGTGGTAATGCTGTGCATGGCG
ATCGTGGGTGCCGTGCGCAGACCAGGCAACGCACAGAGGACCAGACCTCG
CCAGCTGGTGGTCCTCGTTGGCATCGGTCTGGTCATCGGCATGGTGGTAA
TGCTGTGCATGGCGATCGTGGGTGCCGTGCGCAGACCAGGCAACGCACAG
AGGACCAGACCTCGCCAGCTGGTGGTAACACTAGAAAGCTGTCGACGATC
CGCGTCGTCGTTGCAGCTCCGCTTGCGGGTATACGGCTCGCCATGCAATC
CGCGAACTATCACTGTTCATCGCTCTGCGCGCGAAGCTCGTCAGCGGCCG
CTCTCGCCCGAGGTAACACTAGAAAGCTGTCGACGATCCGCGTCGTCGTT
GCAGCTCCGCTTGCGGGTATACGGCTCGCCATGCAATCCGCGAACTATCA
CTGTTCATCGCTCTGCGCGCGAAGCTCGTCAGCGGCCGCTCTCGCCCGAG
GGAGAATATCTAGTGGCCATGATGGTACAGATCAGGCTGGCACCCGTTCC
GAGCGGATTTGGAGTGCTCGCTAGCCAAGCGTCCTTGATCATGCACCGCG
AGACCAGCGCCCGAGCCGGCATGCTGGATTCCAGTCGTCCAACGGCTAGC
CACGCCTCCCTCATCTTACGGGCTGGCCAGCAATGCATCATCACCGGCAT
GGGCTCCGGTTCGAATCGACGGCGAGCGTGCCCAACAAGATGGCAGCTTC
AAACGACGTCACAGGTACTTTTTTCTGCTTGAGGAGAATATCTAGTGGCC
ATGATGGTACAGATCAGGCTGGCACCCGTTCCGAGCGGATTTGGAGTGCT
CGCTAGCCAAGCGTCCTTGATCATGCACCGCGAGACCAGCGCCCGAGCCG
GCATGCTGGATTCCAGTCGTCCAACGGCTAGCCACGCCTCCCTCATCTTA
CGGGCTGGCCAGCAATGCATCATCACCGGCATGGGCTCCGGTTCGAATCG
ACGGCGAGCGTGCCCAACAAGATGGCAGCTTCAAACGACGTCACAGGTAC
TTTTTTCTGCTTGA back to top
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