mRNA_L-elsbetiae_contig1552.3884.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1552.3884.1
Unique NamemRNA_L-elsbetiae_contig1552.3884.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1552.3884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1552contigL-elsbetiae_contig1552:24520..25150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1552.3884.1prot_L-elsbetiae_contig1552.3884.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1552 24725..25060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.2709365-UTR-L-elsbetiae_contig1552:24519..247241622815634.2709365-UTR-L-elsbetiae_contig1552:24519..24724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 24520..24724 +
1691683004.32703-UTR-L-elsbetiae_contig1552:24519..247241691683004.32703-UTR-L-elsbetiae_contig1552:24519..24724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 24520..24724 +
1622815634.2967818-UTR-L-elsbetiae_contig1552:25060..251501622815634.2967818-UTR-L-elsbetiae_contig1552:25060..25150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 25061..25150 +
1691683004.3463964-UTR-L-elsbetiae_contig1552:25060..251501691683004.3463964-UTR-L-elsbetiae_contig1552:25060..25150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 25061..25150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.2827399-CDS-L-elsbetiae_contig1552:24724..250601622815634.2827399-CDS-L-elsbetiae_contig1552:24724..25060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1552 24725..25060 +
1691683004.338302-CDS-L-elsbetiae_contig1552:24724..250601691683004.338302-CDS-L-elsbetiae_contig1552:24724..25060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1552 24725..25060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1552.3884.1

>prot_L-elsbetiae_contig1552.3884.1 ID=prot_L-elsbetiae_contig1552.3884.1|Name=mRNA_L-elsbetiae_contig1552.3884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MPSWQGAHRTLKINVKNKKNVCSSSGVELSGVGYYSPALSARHQSCFIAI
SLPLDLVSRPILRLSVYLTCESLARVQGCSHCGCRGRKVAFPRLFFSSND
SPAFTHGHFSR*
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mRNA from alignment at L-elsbetiae_contig1552:24520..25150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1552.3884.1 ID=mRNA_L-elsbetiae_contig1552.3884.1|Name=mRNA_L-elsbetiae_contig1552.3884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=631bp|location=Sequence derived from alignment at L-elsbetiae_contig1552:24520..25150+ (Laminarionema elsbetiae ELsaHSoW15)
CGATAGAAAAATACTAATCTTATGTACGTCTATCTGTCCATCTACAGCAG
TAGACTAGATACTTCGACCTCACCGTCGACGAGGGGAAAGGGACGGCTGA
ACCCTTCTCGCGACATAAATCTTAGGCTAGCATCGCAGAAGGGGGGAGTG
GGGGCCCCGGGGAAAGAAACCCTTCCGTGTGACCACGGTTCAGCACTCTG
GCAAGATGCCCTCGTGGCAAGGAGCCCATCGAACACTGAAAATAAATGTG
AAGAATAAAAAAAATGTATGTTCGTCCTCGGGCGTCGAGCTCTCCGGGGT
CGGGTATTATAGTCCTGCGCTCTCAGCGCGACATCAGAGCTGTTTCATTG
CAATTTCTCTGCCGCTAGACCTCGTTTCGAGGCCAATCCTACGGCTATCG
GTATATCTGACTTGCGAGAGCCTGGCTCGTGTGCAGGGTTGCTCTCACTG
CGGCTGTCGCGGGCGCAAAGTCGCATTTCCGAGACTCTTTTTTTCGTCCA
ATGACAGTCCCGCCTTTACTCACGGACATTTTTCGCGGTGAACCTTCAGG
CCCCGGAGCCAACCTATGGGTTACGGGGGTGTCAGAACCTTTTCAGCAAA
AAAACATGTCACCGACGTTTGCCCGCCTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1552:24520..25150+

>mRNA_L-elsbetiae_contig1552.3884.1 ID=mRNA_L-elsbetiae_contig1552.3884.1|Name=mRNA_L-elsbetiae_contig1552.3884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1552:24520..25150+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTCGTGGCAAGGAGCCCATCGAACACTGAAAATAAATGTGAAGAA
TAAAAAAAATGTATGTTCGTCCTCGGGCGTCGAGCTCTCCGGGGTCGGGT
ATTATAGTCCTGCGCTCTCAGCGCGACATCAGAGCTGTTTCATTGCAATT
TCTCTGCCGCTAGACCTCGTTTCGAGGCCAATCCTACGGCTATCGGTATA
TCTGACTTGCGAGAGCCTGGCTCGTGTGCAGGGTTGCTCTCACTGCGGCT
GTCGCGGGCGCAAAGTCGCATTTCCGAGACTCTTTTTTTCGTCCAATGAC
AGTCCCGCCTTTACTCACGGACATTTTTCGCGGTGAATGCCCTCGTGGCA
AGGAGCCCATCGAACACTGAAAATAAATGTGAAGAATAAAAAAAATGTAT
GTTCGTCCTCGGGCGTCGAGCTCTCCGGGGTCGGGTATTATAGTCCTGCG
CTCTCAGCGCGACATCAGAGCTGTTTCATTGCAATTTCTCTGCCGCTAGA
CCTCGTTTCGAGGCCAATCCTACGGCTATCGGTATATCTGACTTGCGAGA
GCCTGGCTCGTGTGCAGGGTTGCTCTCACTGCGGCTGTCGCGGGCGCAAA
GTCGCATTTCCGAGACTCTTTTTTTCGTCCAATGACAGTCCCGCCTTTAC
TCACGGACATTTTTCGCGGTGA
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