mRNA_L-elsbetiae_contig1552.3883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1552.3883.1
Unique NamemRNA_L-elsbetiae_contig1552.3883.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: D7G3Y4_ECTSI (Trafficking protein particle complex subunit 2, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.140e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  115 MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPAT 303
            MSVFMIVGRNEPLYEADL S G  +S++ GR+S  +ESAHLNQFIVHSALDMVERKQWSTPAT
Sbjct:    1 MSVFMIVGRNEPLYEADLGSGGGGNSSTAGRSS--EESAHLNQFIVHSALDMVERKQWSTPAT 61          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A6H5KJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.670e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  115 MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPAT 303
            MSVFMIVGRNEPLYEADL S G  +S++ GR+S  +ESAHLNQFIVHSALDMVERKQWSTPAT
Sbjct:    1 MSVFMIVGRNEPLYEADLGSGGGGNSSTAGRSS--EESAHLNQFIVHSALDMVERKQWSTPAT 61          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A4D9CUE9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUE9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.860e-12
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  115 MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDE-SAHLNQFIVHSALDMVERKQWSTP 297
            MS+F+IVG+NEP++EAD S+   S+  S  + SA +E +A LNQFI+HS+LDM+E+  WS+P
Sbjct:    1 MSLFVIVGKNEPIFEADFSTSSTSTGASPNKVSAAEEGNAQLNQFILHSSLDMMEKAMWSSP 62          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A835Z2S7_9STRA (Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.290e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  121 VFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQW 288
            VFMIVGRNEPLYEA+    G  S+N   RA A  E++HL+QFI+HS+LD+VERKQW
Sbjct:    4 VFMIVGRNEPLYEAEF---GLKSANPAQRA-AERENSHLSQFIIHSSLDLVERKQW 55          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A7S2SFI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFI4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.480e-8
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   91 AASGSTNAMSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPAT 303
            AAS    A  +F+I+G+NEP+YE DL+              +  ++AHLNQF+ HSALD+VE+  W+  +T
Sbjct:    3 AASAGVPATLLFLIIGKNEPVYECDLA------------PGSQRDAAHLNQFVAHSALDLVEQAAWTNNST 61          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A397J2M1_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J2M1_9GLOM)

HSP 1 Score: 57.8 bits (138), Expect = 1.180e-7
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  124 FMIVG-RNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWSTPA 300
            F+IVG ++ P+YE +  + G  S N        DES HLNQFIVHSALD+VE  QWST A
Sbjct:    5 FVIVGTKDNPIYELEFGTSGLKSGNIDSNLKK-DESKHLNQFIVHSALDLVEEMQWSTNA 63          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A197JZ52_9FUNG (Sedlin n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JZ52_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 1.410e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   79 SGTGAAS---GSTNAMSVFMIVGRNEPLYEADLSSVGNSSSNSGGRA---SAGDESAHLNQFIVHSALDMVERKQWST 294
            SG G+     G+T      MI  ++ P+YEA+  +V  + S+SGG     +  +E  HLNQFI HSALDMVE  QWST
Sbjct:   13 SGIGSGPLGYGNTPTCYFVMIGTKDNPIYEAEFPAVNTARSSSGGATIPEAKKEEFRHLNQFIAHSALDMVEDIQWST 90          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: K0TLI7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLI7_THAOC)

HSP 1 Score: 57.0 bits (136), Expect = 2.260e-7
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  121 VFMIVGRNEPLYEADL-SSVGNSSSNSGGRASAGDESAHLNQFIVHSALDMVERKQWST 294
            +F+IVG+NEPLYEA++ +S G  SS      S+GD S   N F++HSALD+VE+  W+T
Sbjct:    7 LFVIVGKNEPLYEAEIDTSTGIHSS------SSGDLSTRQNYFVLHSALDLVEKSAWTT 59          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A7S2FMM3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMM3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-7
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  121 VFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDES-AHLNQFIVHSALDMVERKQWSTPAT 303
            +FMIVG  EPLY  +LS            A A DES +HLNQFIVHSALD+V+R  ++T AT
Sbjct:   56 LFMIVGSKEPLYSLELS------------AQAADESQSHLNQFIVHSALDLVDRMAYTTNAT 105          
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Match: A0A7S3PQB4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQB4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.230e-7
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  121 VFMIVGRNEPLYEADLSSVGNSS------SNSGGRASAGDESAHLNQFIVHSALDMVERKQWST 294
            VF IVG+++ +YE + SS G SS      S+    A    ESAHL QF++HSALDMVE + W T
Sbjct:    5 VFAIVGKHDLVYETEFSSSGGSSVAVAAGSDPNVGAKTSSESAHLYQFVMHSALDMVEERMWET 68          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1552.3883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y4_ECTSI1.140e-2480.95Trafficking protein particle complex subunit 2, pu... [more]
A0A6H5KJU0_9PHAE9.670e-2480.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CUE9_9STRA6.860e-1253.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835Z2S7_9STRA3.290e-1164.29Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2SFI4_9STRA1.480e-840.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A397J2M1_9GLOM1.180e-753.33Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A197JZ52_9FUNG1.410e-744.87Sedlin n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0... [more]
K0TLI7_THAOC2.260e-750.85Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2FMM3_9STRA2.320e-753.23Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3PQB4_9STRA3.230e-748.44Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1552contigL-elsbetiae_contig1552:24011..24486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSedlin
Ec32 orthologEc-19_000860.1
Exons1
Model size476
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1552.3883.1prot_L-elsbetiae_contig1552.3883.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1552 24125..24316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.691738-UTR-L-elsbetiae_contig1552:24010..241241622815634.691738-UTR-L-elsbetiae_contig1552:24010..24124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 24011..24124 +
1691683004.6369038-UTR-L-elsbetiae_contig1552:24010..241241691683004.6369038-UTR-L-elsbetiae_contig1552:24010..24124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 24011..24124 +
1622815634.7190456-UTR-L-elsbetiae_contig1552:24316..244861622815634.7190456-UTR-L-elsbetiae_contig1552:24316..24486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 24317..24486 +
1691683004.6605642-UTR-L-elsbetiae_contig1552:24316..244861691683004.6605642-UTR-L-elsbetiae_contig1552:24316..24486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1552 24317..24486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.7058468-CDS-L-elsbetiae_contig1552:24124..243161622815634.7058468-CDS-L-elsbetiae_contig1552:24124..24316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1552 24125..24316 +
1691683004.649738-CDS-L-elsbetiae_contig1552:24124..243161691683004.649738-CDS-L-elsbetiae_contig1552:24124..24316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1552 24125..24316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1552.3883.1

>prot_L-elsbetiae_contig1552.3883.1 ID=prot_L-elsbetiae_contig1552.3883.1|Name=mRNA_L-elsbetiae_contig1552.3883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MSVFMIVGRNEPLYEADLSSVGNSSSNSGGRASAGDESAHLNQFIVHSAL
DMVERKQWSTPAT*
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mRNA from alignment at L-elsbetiae_contig1552:24011..24486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1552.3883.1 ID=mRNA_L-elsbetiae_contig1552.3883.1|Name=mRNA_L-elsbetiae_contig1552.3883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=476bp|location=Sequence derived from alignment at L-elsbetiae_contig1552:24011..24486+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCATCGCAAGCTAGAAAAGTATCCGCTCCGTGTGTTTGGTGTCTCAT ATACTCAAACCTACGCAAAGGCGTTGTTTCTGGCACTGGTGCTGCTTCAG GGAGCACAAACGCCATGTCTGTCTTCATGATCGTCGGAAGAAACGAGCCT CTCTACGAGGCGGATCTGAGCTCTGTCGGGAACAGCAGCAGCAACAGCGG AGGGAGAGCATCTGCGGGGGACGAATCGGCGCATCTGAACCAGTTCATCG TGCACTCCGCACTGGATATGGTGGAAAGAAAACAGTGGTCGACTCCTGCA ACGTAAGTTTCTCGGCCGGGGAGAGGGTGGAGACACTCTGGAGCGGCGGT GTTACAACAGCAGTGGTCTATTTGCGTTTGGTTCTGTTATCCGTCGTTGT GGCGCGGCGCTTTGTTGTTTGCACACACCCCTGTACCTGTTACTTACCGT CTTTGTTGGAGATGTTAGGTCTAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1552:24011..24486+

>mRNA_L-elsbetiae_contig1552.3883.1 ID=mRNA_L-elsbetiae_contig1552.3883.1|Name=mRNA_L-elsbetiae_contig1552.3883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1552:24011..24486+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGTCTTCATGATCGTCGGAAGAAACGAGCCTCTCTACGAGGCGGA
TCTGAGCTCTGTCGGGAACAGCAGCAGCAACAGCGGAGGGAGAGCATCTG
CGGGGGACGAATCGGCGCATCTGAACCAGTTCATCGTGCACTCCGCACTG
GATATGGTGGAAAGAAAACAGTGGTCGACTCCTGCAACGTAAATGTCTGT
CTTCATGATCGTCGGAAGAAACGAGCCTCTCTACGAGGCGGATCTGAGCT
CTGTCGGGAACAGCAGCAGCAACAGCGGAGGGAGAGCATCTGCGGGGGAC
GAATCGGCGCATCTGAACCAGTTCATCGTGCACTCCGCACTGGATATGGT
GGAAAGAAAACAGTGGTCGACTCCTGCAACGTAA
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