mRNA_L-elsbetiae_contig15518.3881.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15518.3881.1
Unique NamemRNA_L-elsbetiae_contig15518.3881.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.010e-24
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*-KPLMRSFDQFGRVFLTFL 450
            ENG IN KTV NEVKRVLGHSS+RLKVCM EVWFCGRCF  KPLMRSFDQFGRVFLTFL
Sbjct:  843 ENGVINRKTVGNEVKRVLGHSSERLKVCMAEVWFCGRCFCEKPLMRSFDQFGRVFLTFL 901
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5K8T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.960e-24
Identity = 49/59 (83.05%), Postives = 51/59 (86.44%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*K-PLMRSFDQFGRVFLTFL 450
            EN AIN KTVA  V+RVLGHSSDRLKVCM+EVWFCGRCF K PLMRSFDQ GRV LTFL
Sbjct:   21 ENEAINRKTVAGLVQRVLGHSSDRLKVCMLEVWFCGRCFCKNPLMRSFDQVGRVILTFL 79
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5JLY7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.950e-23
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*K-PLMRSFDQFGRVFLTFL 450
            EN AIN KTVA  V+RVLGHSSDRLKVCMVEVWFCGRCF K PLMRSFDQ GRV LTFL
Sbjct:  146 ENEAINRKTVAGLVQRVLGHSSDRLKVCMVEVWFCGRCFCKNPLMRSFDQVGRVILTFL 204
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.830e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*-KPLMRSFDQFGRVFLTFL 450
            EN AIN K+VAN VKRV GH S+R+++C  +VWFCGRCF  K LMRSFDQFGRV LTF+
Sbjct:  415 ENEAINRKSVANMVKRVRGHGSERVEICQAQVWFCGRCFCQKSLMRSFDQFGRVRLTFV 473
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.910e-15
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*K-PLMRSFDQFGRVFLTFL 450
            EN AIN ++VAN VKRV GH  +++++C  EVWFCGRCF +  LMRSFDQFGRV LTF+
Sbjct:  795 ENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTFI 853
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5JTF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.040e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*K-PLMRSFDQFGRVFLTFL 450
            EN A+  ++VAN VKRV GH  +++++C  EVWFCGRCF +  LMRSFDQFGRV LTF+
Sbjct:  166 ENEAMKRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTFI 224
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5JU18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU18_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.100e-13
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -1 
Query:  277 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*KP-LMRSFDQFGRVFLTFL 450
            +N AIN ++VAN VKRV GH S+R+++C  EVWF GRCF +  L+RSFDQF RV  TFL
Sbjct:  178 KNEAINRESVANTVKRVRGHGSERVEICQAEVWFWGRCFCQESLVRSFDQFSRVRPTFL 236
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5JIR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.800e-10
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = -1 
Query:  283 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*-KPLMRSFDQFGRVFLT 450
            EN  IN KT +  V   + H  +RL  C  EVW CGRCF  KPLMRSFDQFG++ +T
Sbjct:  117 ENVKINRKTCSVAVSSAIEHPHERLHACRKEVWTCGRCFCSKPLMRSFDQFGKLRIT 173
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BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Match: A0A6H5K6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6F2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.980e-8
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = -1 
Query:  283 ENGAINSKTVANEVKRVLGHSSDRLKVCMVEVWFCGRCF*-KPLMRSFDQFGRVFLT 450
            EN  IN KT +  V     H  +RL  C  EV  CGRCF  KPLMRSFDQFG++ +T
Sbjct:   53 ENVKINRKTCSVAVSSATEHPHERLHACRKEVSTCGRCFCSKPLMRSFDQFGKLRIT 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15518.3881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KKU6_9PHAE1.010e-2488.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T0_9PHAE1.960e-2483.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLY7_9PHAE1.950e-2384.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G349_ECTSI3.830e-1769.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1E3_9PHAE1.910e-1564.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTF9_9PHAE4.040e-1561.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU18_9PHAE7.100e-1361.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR9_9PHAE5.800e-1054.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6F2_9PHAE4.980e-852.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15518contigL-elsbetiae_contig15518:1241..1691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.2313-CDS-L-elsbetiae_contig15518:1240..16901622815634.2313-CDS-L-elsbetiae_contig15518:1240..1690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15518 1241..1690 +
1691683004.3177047-CDS-L-elsbetiae_contig15518:1240..16901691683004.3177047-CDS-L-elsbetiae_contig15518:1240..1690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15518 1241..1690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15518.3881.1prot_L-elsbetiae_contig15518.3881.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15518 1241..1690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15518.3881.1

>prot_L-elsbetiae_contig15518.3881.1 ID=prot_L-elsbetiae_contig15518.3881.1|Name=mRNA_L-elsbetiae_contig15518.3881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
VHANAPFHLQLILPTDTRENQRKRVPYRYSCTRISHHHAASKSVGTDRLS
PNRDQQQYGGRPKIRTTRTEHASKCVHGKPSGICALRKGKILQERQKHAA
ELIERSHQRLLEAPAAKPNFYHANFQPVTAVTQHALDFISHGFAIDCPVL
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mRNA from alignment at L-elsbetiae_contig15518:1241..1691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15518.3881.1 ID=mRNA_L-elsbetiae_contig15518.3881.1|Name=mRNA_L-elsbetiae_contig15518.3881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=451bp|location=Sequence derived from alignment at L-elsbetiae_contig15518:1241..1691+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCATGCTAATGCGCCGTTCCACTTACAGCTCATCCTGCCCACGGATAC
GAGAGAAAACCAAAGAAAAAGAGTACCATATAGATATTCTTGTACAAGAA
TCTCGCATCACCACGCAGCCTCGAAATCCGTCGGCACGGATCGCCTGTCA
CCGAATCGCGATCAACAACAATACGGCGGGCGCCCAAAGATACGAACTAC
ACGTACCGAGCATGCCTCGAAGTGCGTCCACGGCAAACCCAGCGGCATAT
GCGCTCTACGAAAAGGCAAAATTCTACAAGAACGTCAAAAACACGCGGCC
GAATTGATCGAAAGATCTCATCAAAGGCTTCTAGAAGCACCGGCCGCAAA
ACCAAACTTCTACCATGCAAACTTTCAGCCGGTCACTGCTGTGACCCAAC
ACGCGCTTGACTTCATTAGCCACGGTTTTGCTATTGATTGCCCCGTTCTC
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15518:1241..1691+

>mRNA_L-elsbetiae_contig15518.3881.1 ID=mRNA_L-elsbetiae_contig15518.3881.1|Name=mRNA_L-elsbetiae_contig15518.3881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig15518:1241..1691+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCATGCTAATGCGCCGTTCCACTTACAGCTCATCCTGCCCACGGATAC
GAGAGAAAACCAAAGAAAAAGAGTACCATATAGATATTCTTGTACAAGAA
TCTCGCATCACCACGCAGCCTCGAAATCCGTCGGCACGGATCGCCTGTCA
CCGAATCGCGATCAACAACAATACGGCGGGCGCCCAAAGATACGAACTAC
ACGTACCGAGCATGCCTCGAAGTGCGTCCACGGCAAACCCAGCGGCATAT
GCGCTCTACGAAAAGGCAAAATTCTACAAGAACGTCAAAAACACGCGGCC
GAATTGATCGAAAGATCTCATCAAAGGCTTCTAGAAGCACCGGCCGCAAA
ACCAAACTTCTACCATGCAAACTTTCAGCCGGTCACTGCTGTGACCCAAC
ACGCGCTTGACTTCATTAGCCACGGTTTTGCTATTGATTGCCCCGTTCTC
GTGCATGCTAATGCGCCGTTCCACTTACAGCTCATCCTGCCCACGGATAC
GAGAGAAAACCAAAGAAAAAGAGTACCATATAGATATTCTTGTACAAGAA
TCTCGCATCACCACGCAGCCTCGAAATCCGTCGGCACGGATCGCCTGTCA
CCGAATCGCGATCAACAACAATACGGCGGGCGCCCAAAGATACGAACTAC
ACGTACCGAGCATGCCTCGAAGTGCGTCCACGGCAAACCCAGCGGCATAT
GCGCTCTACGAAAAGGCAAAATTCTACAAGAACGTCAAAAACACGCGGCC
GAATTGATCGAAAGATCTCATCAAAGGCTTCTAGAAGCACCGGCCGCAAA
ACCAAACTTCTACCATGCAAACTTTCAGCCGGTCACTGCTGTGACCCAAC
ACGCGCTTGACTTCATTAGCCACGGTTTTGCTATTGATTGCCCCGTTCTC
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