mRNA_L-elsbetiae_contig15510.3877.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15510.3877.1
Unique NamemRNA_L-elsbetiae_contig15510.3877.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15510.3877.1 vs. uniprot
Match: D8LIR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR4_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.080e-47
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 3 
Query:    3 QQEGGATGGWPQHEHDCFLRLWTQARNRGPKSGSRPPHSSPADRAAVASLLQRAQTMLPARSAEEVGEHLAWHQRHKDYNEEKRRLAKAWREQRQRQHEKRA 308
            Q+EGGATGGWPQHEHDCFLRLWTQAR+RGPK  +RPP SSPADRAAV+SLLQRAQTMLPARSA+EV EHL WH RH  YNEEKRRLAKAWRE+RQ  HE++A
Sbjct:  164 QREGGATGGWPQHEHDCFLRLWTQARSRGPKHEARPPPSSPADRAAVSSLLQRAQTMLPARSADEVEEHLRWHGRHTGYNEEKRRLAKAWREERQ--HEQQA 263
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BLAST of mRNA_L-elsbetiae_contig15510.3877.1 vs. uniprot
Match: A0A836CGE1_9STRA (DNA alkylation repair enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-19
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:    3 QQEGGATGGWPQHEHDCFLRLWTQARNRGPKSGSRPPHSSPADRAAVASLLQRAQTMLPARSAEEVGEHLAWHQRHKDYNEEKRRLAKAWREQRQRQHEKRAVC 314
            + EGGATGGWPQH+HD FLRLWTQ  N+G    +R   ++   R  VA+LL RA T L  R + EV +H AW+ RH +Y  +KR L  AWRE+R ++  ++A+ 
Sbjct:  507 RNEGGATGGWPQHQHDTFLRLWTQV-NKGDALVTR--ETADVRRRKVAALLSRAATALVERDSSEVEDHFAWYVRHLEYARQKRELVAAWRERRAQERAEKALA 607
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15510.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIR4_ECTSI1.080e-4782.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGE1_9STRA5.850e-1948.08DNA alkylation repair enzyme-domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15510contigL-elsbetiae_contig15510:392..4011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size322
Cds size321
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15510.3877.1prot_L-elsbetiae_contig15510.3877.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15510 392..4011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.951227-CDS-L-elsbetiae_contig15510:391..5151622815633.951227-CDS-L-elsbetiae_contig15510:391..515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15510 392..515 -
1691683004.198623-CDS-L-elsbetiae_contig15510:391..5151691683004.198623-CDS-L-elsbetiae_contig15510:391..515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15510 392..515 -
1622815633.9646041-CDS-L-elsbetiae_contig15510:2346..24691622815633.9646041-CDS-L-elsbetiae_contig15510:2346..2469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15510 2347..2469 -
1691683004.207957-CDS-L-elsbetiae_contig15510:2346..24691691683004.207957-CDS-L-elsbetiae_contig15510:2346..2469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15510 2347..2469 -
1622815633.9758284-CDS-L-elsbetiae_contig15510:3937..40111622815633.9758284-CDS-L-elsbetiae_contig15510:3937..4011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15510 3938..4011 -
1691683004.2188919-CDS-L-elsbetiae_contig15510:3937..40111691683004.2188919-CDS-L-elsbetiae_contig15510:3937..4011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15510 3938..4011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15510.3877.1

>prot_L-elsbetiae_contig15510.3877.1 ID=prot_L-elsbetiae_contig15510.3877.1|Name=mRNA_L-elsbetiae_contig15510.3877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
YSRREGPLEVGRSTSTTASFASGRRLGTEAQRAGRAPRILLLPTGPLSRP
CCSGRRPCSRLGRRKRLGNTWRGISGTRTTTRRNGASPRRGGSRGRGSTK
RERCVK*
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mRNA from alignment at L-elsbetiae_contig15510:392..4011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15510.3877.1 ID=mRNA_L-elsbetiae_contig15510.3877.1|Name=mRNA_L-elsbetiae_contig15510.3877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3620bp|location=Sequence derived from alignment at L-elsbetiae_contig15510:392..4011- (Laminarionema elsbetiae ELsaHSoW15)
TACAGCAGGAGGGAGGGGCCACTGGAGGTTGGCCGCAGCACGAGCACGAC
TGCTTCCTTCGCCTCTGGACGCAGGTTGGTGTCGAATAAGAAAAACAAAA
AAAAAAAGTTGTCGGGTCCTTCTTGGGCCCTTTTATTTTTTTTTGGTGTT
TGTACACAAACTTCGACCTCACCGTCGACAAGGAAAAGGGACGGCTGAAC
CCTGCCTTCTCGCGTCAAAGAATCTTAGGCAAGCACCGCAGCAGGTGGGA
GTGGGTGGGGGCCTCGGGGGATAGGAACCCTTCTGTTTGGCCACGGTTCG
GTGCTCTGGCAAGATGCCCTCGTGGCAAGGAGCCCGTCGAGCACGCACTG
GAAATACGTGTGAAGAAAAAAGTAAACAAAAAACATCCGATCGATCGATT
GGTCTGCGAAACCTTTTTCCCGTCGCCTTGCTGTATGTACTGGCTGTGTC
TCCTCCGAGCTTTCGGTGTGCTGGCTCAACGTTGCCGCTGCATGTAGTGT
AGCTCCCGTGCAGTCCTCGACGTCGTTCGTGACTTCTAAAACAAAATGCG
GAGGAAATCATACGCGACGCCAGCTTAGGGTGGAAGGAATCCGCTCAAGT
ATTATCAGTATGTACCTCGGAAACGAAATCAGAGAAAGCCGATTATGTAA
TATCATAGACATGGACTATTATATCTTGGGCATGGATCGGTGCTTTTGAA
TCGAGTGTAGAATCCCCGACGTGTGTGCTTACCCCGCGCGCGGGGATCAA
GGTCAATTTGCGGTATGCATACACAAACTTGATTTATTGGTCAATAGAGA
AGGTTCACCTAGACTAGACCATCATCAAAATGGAATCGTTCTCGCCGGCG
ATGAACTAACTGTTCTGTAGGGGGTGGCACAATGTGGGGGCACGAGAGCG
GGGCACACCCCGACTTGGTTCAAGCTCGTGTGCGAGGAGTCGGCGTAAGT
ACATCATTCCGTAGAATCATACGCTGTCGATAGATCGATCCCCTCGAGTG
TAGACTTCGGCATACCATCTCTCGGAACATTGACCAAAGACTCTCATATA
TATATTTTTTTCTCTTCACATTTTTTTCCAGTGCTCGATGGGCCCCTTGC
CACGAAGGCATCTTGCCAGAGTACTGAACCGTGGTCACACAGAATATACA
CATTGGCCGTAATAAATGGGTCATGAAGAGGCTCCGTCGCTGCAAATAAT
GTGGGCTACATATAGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCC
CCNNNNNNNNNNATATCCACAGTGGACAAAATAAGTGGGTCAGAAAAGGG
CTCCGGCCATTTAAATAATGTGGGCCTAACACGTCCCCCCCCCCCCCCCC
CCCCCCCGATTCCGGGTTTATCGAAGCTTTGAAGCCTGGCCATGGCCTCC
AATCCTGCAATCCGGGAGCCCCCTTAAAAAAAAACGGTCCCGTTGGTGGG
GGTCCCGTCGATGCACATGATTTGTTGCTTGCCCGCACACAGGCTAGGAA
CCGAGGCCCAAAGAGCGGGTCGCGCCCCCCGCATTCTTCTCCTGCCGACA
GGGCCGCTGTCGCGTCCCTGCTGCAGCGGGCGCAGACCATGCTCCCGGCT
AGGTCGGCGGAAGAGGTGAGCCGATCCTATCCGCACGCGTCTGATAGTCT
TCCTGCAATACCGTATACGACGCAGGATAACACGCCCCCTGGACCGATTT
TCAAAGCTCAAGTACTCCACAGCGAGAAGAGTGTCAGCCCCGAAAGGGGC
GGCGTTGGAAAAACCTCATCAAGAGCTGTCCGAAAAATTGCCGTCTAGTA
TTATAATCATGCTCGTTGCGGAGTTACCGAGCTTTGAAACTCGGCCCAGG
GGGTGTCTTATCTTGTGTCGTAGGAGTATACGGTAGTCTTCCTGCAATAG
AGCCCCCAATTCTCAAAAAGAGCTGTAGGGGCAGCGGGGGGGGGGATTTA
TCTAGGAAATACATAAGAATGAAAAATCCCCCGCAGCCGCTTTTTCGGAA
AGTGGGGGGCCTGCTGCAGGAAGAGCCTATAGAGCCCCCCATTCCCAAAA
AGAGCTGTGGGGGGCAGCGCGGGGGGGTTTCATCAGGGATGTTCACGGGT
CAAAAGTATTTGAAACATGACGGGTCGGGTCGGGTCAGTGACCCGGTATG
GAAAATCTGACGGGTCGGGTCGGGTCAGTGACCCGGGATGGAAAAATCTG
ACGGGTCGGGTCGGATCAGCTGACCCGCACCTGACCCGTCAGATTGACCC
GACCCGTGAACATCCCTGGTATTTATCTAGGAAATACAAAGAGTGAAAAA
TCCCCCACAGCCACTTTTTCGGAAGTGGGGGCCCTGCTGCAGGGAAAGCC
TATTGAACAAAATGGGATGTGTTTTGGGGGTTTGGTGCGATGGTGTCGGC
GGAAGAGACGGGGCCAGTCAGCTCACACGCGTTCTGGTTGAACAATATAA
TGTATTTGTAATTAATGTACAACATACAAATGTCAGCAGTCTACGTCCAG
TCCGCGAAGAAGTCGTTCCAGAGGGACTGATACTGTTGTAGACAGTCCCG
TTGACAGTCCAGCCACCCGGCCTCTTTTAACTATTGTATACAAATGTCAG
CGTGCTACGTCCAGTATGCGAAGAAGTCGTTCCAGAGGGACTGTTGTAGG
CATACCAACTCCCTGTTTCCCCATCCAAGATATTTTGTGGTATGGTGTGG
TGTAGTGGTGTTTTTTTTTTGGCGATGGCGAAGGCGATGGCAATGGTGGT
GGTGGTGATGTTGGTGATGATGGCGGCTTCTTGACATTTCCGGTTGTCTT
TTGGTGCTCTTGCCCGTCACGTCCTCCATTTCCAGCACAACCTCGTTTTC
TGTGTTGTTGCGCCGGGATTTTTTTGTTGCGTTTGAGCTTTCCCTCCGCA
GGTACACAACAAACCGCCAAGCCAACACCGCCGTCAAGAATTTTCCGATA
ATGTTATTTTTAAGGGCGGATGCCCGTCTCTACCTTTGGAGAGGAAAAAC
TTCGCCTTCAAGACAGCTACAAGTTAGAGGCGGGCCATCTCTCTGTATTG
TAGAGAAAAGCAAACTGTTGTGTTGGAGTGGGTCGAGGGGTATCGCAGCG
GGACGCTAAGAGCCGAACTGGAATGTGGTGCTTTCGGGAGGGGGCCCGTG
CTGTCAGTCTCAGCATACCCCAAGAATGTGCTTTCAAAAAAGCATTCACA
CCGTGCTCGTCACTGAGTGCCTGGCCTGGACCAAAGTTCAGTCTGTAGAT
CCCCTCACCGTCCCTTGAAGTTCGAGACATCGAGAGGTGTATATACTTTT
TTGTTTTCAAGCGTACCTAGCGCCCGCCTCTGGAGTGAGCACTGCGTGTT
GCGCTGCACGTGTCGGATGCGTGGTGTTTGTGCCGCTGTGTGCTTGCTGG
CCGTGACATGCTGTGTGCACGCACGGTTTGATGGCTTGATGCCTAGGTTG
GGGAACACCTGGCGTGGCATCAGCGGCACAAGGACTACAACGAGGAGAAA
CGGCGCCTCGCCAAGGCGTGGAGGGAGCAGAGGCAGAGGCAGCACGAAAA
GAGAGCGGTGTGTAAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15510:392..4011-

>mRNA_L-elsbetiae_contig15510.3877.1 ID=mRNA_L-elsbetiae_contig15510.3877.1|Name=mRNA_L-elsbetiae_contig15510.3877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig15510:392..4011- (Laminarionema elsbetiae ELsaHSoW15)
TACAGCAGGAGGGAGGGGCCACTGGAGGTTGGCCGCAGCACGAGCACGAC
TGCTTCCTTCGCCTCTGGACGCAGTACAGCAGGAGGGAGGGGCCACTGGA
GGTTGGCCGCAGCACGAGCACGACTGCTTCCTTCGCCTCTGGACGCAGGC
TAGGAACCGAGGCCCAAAGAGCGGGTCGCGCCCCCCGCATTCTTCTCCTG
CCGACAGGGCCGCTGTCGCGTCCCTGCTGCAGCGGGCGCAGACCATGCTC
CCGGCTAGGTCGGCGGAAGAGGCTAGGAACCGAGGCCCAAAGAGCGGGTC
GCGCCCCCCGCATTCTTCTCCTGCCGACAGGGCCGCTGTCGCGTCCCTGC
TGCAGCGGGCGCAGACCATGCTCCCGGCTAGGTCGGCGGAAGAGGTTGGG
GAACACCTGGCGTGGCATCAGCGGCACAAGGACTACAACGAGGAGAAACG
GCGCCTCGCCAAGGCGTGGAGGGAGCAGAGGCAGAGGCAGCACGAAAAGA
GAGCGGTGTGTAAAATAGGTTGGGGAACACCTGGCGTGGCATCAGCGGCA
CAAGGACTACAACGAGGAGAAACGGCGCCTCGCCAAGGCGTGGAGGGAGC
AGAGGCAGAGGCAGCACGAAAAGAGAGCGGTGTGTAAAATAG
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