mRNA_L-elsbetiae_contig15504.3874.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15504.3874.1
Unique NamemRNA_L-elsbetiae_contig15504.3874.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15504.3874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15504contigL-elsbetiae_contig15504:2518..3387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size292
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15504.3874.1prot_L-elsbetiae_contig15504.3874.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15504 2518..3369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.5257485-CDS-L-elsbetiae_contig15504:2517..25971622815633.5257485-CDS-L-elsbetiae_contig15504:2517..2597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15504 2518..2597 -
1691683003.912536-CDS-L-elsbetiae_contig15504:2517..25971691683003.912536-CDS-L-elsbetiae_contig15504:2517..2597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15504 2518..2597 -
1622815633.5389588-CDS-L-elsbetiae_contig15504:3176..33691622815633.5389588-CDS-L-elsbetiae_contig15504:3176..3369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15504 3177..3369 -
1691683003.9240239-CDS-L-elsbetiae_contig15504:3176..33691691683003.9240239-CDS-L-elsbetiae_contig15504:3176..3369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15504 3177..3369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.551814-UTR-L-elsbetiae_contig15504:3369..33871622815633.551814-UTR-L-elsbetiae_contig15504:3369..3387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15504 3370..3387 -
1691683003.932094-UTR-L-elsbetiae_contig15504:3369..33871691683003.932094-UTR-L-elsbetiae_contig15504:3369..3387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15504 3370..3387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15504.3874.1

>prot_L-elsbetiae_contig15504.3874.1 ID=prot_L-elsbetiae_contig15504.3874.1|Name=mRNA_L-elsbetiae_contig15504.3874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MMLFAAFTSFQALGTLPATAVNALHVARATSLLAPLVMRTMAAGAGVIDT
AKAAADAPEGFASEGTSDSREYFANIWTAPSDGICTVAGDW
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mRNA from alignment at L-elsbetiae_contig15504:2518..3387-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15504.3874.1 ID=mRNA_L-elsbetiae_contig15504.3874.1|Name=mRNA_L-elsbetiae_contig15504.3874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig15504:2518..3387- (Laminarionema elsbetiae ELsaHSoW15)
GGTTATATCGAAGCAGTGATGATGCTGTTCGCGGCTTTCACTAGTTTTCA
GGCCTTAGGGACCCTACCAGCAACCGCAGTGAACGCTCTTCACGTGGCTC
GAGCCACGTCGTTGCTGGCTCCCCTGGTTATGCGCACGATGGCCGCTGGC
GCTGGAGTGATCGATACTGCCAAGGCCGCGGCGGACGCTCCCGAGGGCTT
TGCTTCCGAAGGTGAGCAGCGAGACAGAGGCGGAATGCGTCACCAAGCGA
CAGCCGAAAATGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAAATACAGGTACAGAGGGCAATGGACTCAAAGTGGAGAGCGCCGTGG
GGCAACCCCGACCGATCGAAACGCTCTCCCGGCGATAAAATTGGGAAAAC
GAACGCATGTTCTGGCACGCCAGCGGTCCACAACAGTGTTCAGACCACAT
AATTGTTATAGTCTAAATTCAAGTGAAAAATTCCGGTTGCCTGAGAGAGA
GCGTGCGAGCCCCGTAGAAATTTCCTCGAATAAAGAGCGGGGAGACAACA
TTTTAGAACTTCTATGTACAGCACAGTTGTATATGTAATCGCCTCCCTAA
CCTGGGCCTACCTACATAGCTTGGGCAACACGCGTTCCTCGGCTGGACGG
CGGGGCTAGATAGGGGTTCGAGAGACTTTTCTACCTTTGAGCGCCTCATC
ATGTACTTCTATATATTTTTCATCATGCGGAAAAATCCCCCCTTGCCACG
TACGTCGCCGGTTTTTGCTAAACGGTGAATTTTACCTCAGGAACTTCCGA
CTCGCGAGAGTACTTCGCGAACATCTGGACGGCACCCTCCGATGGCATCT
GCACCGTGGCCGGTGACTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15504:2518..3387-

>mRNA_L-elsbetiae_contig15504.3874.1 ID=mRNA_L-elsbetiae_contig15504.3874.1|Name=mRNA_L-elsbetiae_contig15504.3874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig15504:2518..3387- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCTGTTCGCGGCTTTCACTAGTTTTCAGGCCTTAGGGACCCTACC
AGCAACCGCAGTGAACGCTCTTCACGTGGCTCGAGCCACGTCGTTGCTGG
CTCCCCTGGTTATGCGCACGATGGCCGCTGGCGCTGGAGTGATCGATACT
GCCAAGGCCGCGGCGGACGCTCCCGAGGGCTTTGCTTCCGAAGATGATGC
TGTTCGCGGCTTTCACTAGTTTTCAGGCCTTAGGGACCCTACCAGCAACC
GCAGTGAACGCTCTTCACGTGGCTCGAGCCACGTCGTTGCTGGCTCCCCT
GGTTATGCGCACGATGGCCGCTGGCGCTGGAGTGATCGATACTGCCAAGG
CCGCGGCGGACGCTCCCGAGGGCTTTGCTTCCGAAGGAACTTCCGACTCG
CGAGAGTACTTCGCGAACATCTGGACGGCACCCTCCGATGGCATCTGCAC
CGTGGCCGGTGACTGGGAACTTCCGACTCGCGAGAGTACTTCGCGAACAT
CTGGACGGCACCCTCCGATGGCATCTGCACCGTGGCCGGTGACTGG
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