mRNA_L-elsbetiae_contig15503.3873.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: D7FU38_ECTSI (NMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU38_ECTSI) HSP 1 Score: 373 bits (957), Expect = 1.630e-124 Identity = 190/235 (80.85%), Postives = 212/235 (90.21%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAEDQLDSINRLRTNLDFDPPSRPRVGGGGHGNPKSLSSSNIDDMDRGGGGLEGGPVRVKRASTVSDLSNPVRVPPGTRQVISSGSSYERRAGYSRAVRVGKHVQV 705 RYCATYEALG+DDHKAKIVSTSGDETVRTRV+D+AAAVRPHNPV WPEPYDSSGVA NDFTAKWHT+EA L+ L+ RDGV+GHSRPTAQ+EDAERTRD S+AKV+MGEGAGLIYSVDAAEK+TRDV+REAE+QLD +NRLRT+++FDPP RPRV GGG G P SLS++NIDDMDR G + VRVKRA+TVSDLSNPVR P GTRQVISSGSSYE+ AGYSRAVRVGKHVQV Sbjct: 226 RYCATYEALGTDDHKAKIVSTSGDETVRTRVFDMAAAVRPHNPVLWPEPYDSSGVAWNDFTAKWHTREARLEEDLSDRDGVTGHSRPTAQLEDAERTRDLSIAKVYMGEGAGLIYSVDAAEKITRDVAREAEEQLDIVNRLRTDMEFDPPPRPRVSGGG-GKPMSLSANNIDDMDRWGLDSQA-TVRVKRANTVSDLSNPVRAP-GTRQVISSGSSYEKMAGYSRAVRVGKHVQV 457
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: A0A6H5JZB1_9PHAE (NMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB1_9PHAE) HSP 1 Score: 371 bits (953), Expect = 1.310e-122 Identity = 188/235 (80.00%), Postives = 210/235 (89.36%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAEDQLDSINRLRTNLDFDPPSRPRVGGGGHGNPKSLSSSNIDDMDRGGGGLEGGPVRVKRASTVSDLSNPVRVPPGTRQVISSGSSYERRAGYSRAVRVGKHVQV 705 RYCATYEALG+DDHKAKIVSTSGDETVRTRV+D+AAAVRPHNPV WPEPYDSSGVA NDFTAKWHT+EA L+ L++RDGV+GHSRPTAQ+EDAER RD S+AKV+MGEGAGLIYSVDAAEK+TRDV+REAE+QLD +NRLRT+ +FDPP RP V GGG P SLS++NIDDMDRGG G + RVKRA+TVSDLSNPVR P GTRQVISSGSSYE+ AGYSRAVRVGKHVQV Sbjct: 330 RYCATYEALGTDDHKAKIVSTSGDETVRTRVFDMAAAVRPHNPVLWPEPYDSSGVAWNDFTAKWHTQEARLEEDLSVRDGVTGHSRPTAQLEDAERMRDLSIAKVYMGEGAGLIYSVDAAEKITRDVAREAEEQLDMVNRLRTDKEFDPPPRPHVSGGGD-RPMSLSANNIDDMDRGGLGSQA-TARVKRANTVSDLSNPVRAP-GTRQVISSGSSYEKMAGYSRAVRVGKHVQV 561
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: A0A0D7PKD0_9BRAD (Oxidoreductase n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A0D7PKD0_9BRAD) HSP 1 Score: 78.2 bits (191), Expect = 2.420e-13 Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAEDQL 405 R+ AT EAL KAK+V+ SGDET+RT VYD+ WPE Y + + N F KWH E L A A ++E A R DF VA V +GE G+I+ + A V R V EA+++L Sbjct: 198 RFWATKEALIHPSAKAKVVAASGDETIRTSVYDIVRRRA------WPEGY-TGRLLKNGFIEKWHGHEEKLRALQADE---------LEKVEAASRVGDFDVANVTVGESIGMIHDLPEAGDVVRRVVVEAKERL 316
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: UPI001BAACE30 (nitronate monooxygenase n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAACE30) HSP 1 Score: 78.2 bits (191), Expect = 2.510e-13 Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAE 396 R+ AT EAL KAK+V+ SGDETVRT VYD+ VR +WP Y + + N+F KWH +EA L+A + A++E A D+ A V +GE GLI + A ++ + ++ EAE Sbjct: 199 RFWATQEALIHPKAKAKVVAASGDETVRTSVYDI---VRRR---EWPSGY-TGRLLRNEFIEKWHGREAELEAMK---------NEELARVETAWEAGDYDTANVTVGESIGLIQDIPRAGELVKRIAAEAE 314
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: J4TKI7_9MYCO (Oxidoreductase, 2-nitropropane dioxygenase n=7 Tax=Mycobacterium colombiense TaxID=339268 RepID=J4TKI7_9MYCO) HSP 1 Score: 77.4 bits (189), Expect = 4.640e-13 Identity = 50/131 (38.17%), Postives = 66/131 (50.38%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREA 393 R+ AT EAL S + + VS GD+TVRTRVYDL + WP YD+ + SN F WH EA L A L + +S + + A DF A + GEG G I V A ++ D++REA Sbjct: 203 RFWATPEALVSPRAQRRAVSAGGDDTVRTRVYDLVRRLG------WPAGYDARAL-SNAFLDTWHGNEAELSAQLP--EAISAYEKAVA-------AEDFDTAAILTGEGVGCIRDVRPAAEIVTDMAREA 317
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: UPI001984EE3C (Nitronate monooxygenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001984EE3C) HSP 1 Score: 76.6 bits (187), Expect = 8.860e-13 Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAE 396 R AT EALG ++ K ++ +SGD T+RTR++D+ + WPE Y +A N+FTA WH +EA L + + + A R D S A VF GEG LI+ + A ++ R+++ +AE Sbjct: 202 RLWATPEALGHNNVKELLLKSSGDTTMRTRIFDIIREL------DWPEGYSGRALA-NEFTAAWHGREAELASRIDAE---------KERFWSAMREGDVSTAVVFAGEGLDLIHDIRPAGEIVREIAADAE 317
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: A0A1H0BES7_9BRAD (Nitronate monooxygenase n=2 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0BES7_9BRAD) HSP 1 Score: 76.6 bits (187), Expect = 1.010e-12 Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAEDQL 405 R+ AT EAL + KAK+V+ SGDET+RT VYD+ WPE Y + + N+F +WH +E L A A A++E A R ++ +A V +GE G+I+ + A V R V EA ++L Sbjct: 198 RFWATQEALIHPNAKAKVVAASGDETIRTSVYDIVRQKA------WPEGY-TGRLLRNEFIDQWHGQEEKLKALRADE---------LAKVEAASRVGNYDIANVTVGESIGMIHDLPHAGDVVRRVVDEAVERL 316
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: A0A1A2RZL0_9MYCO (Oxidoreductase n=1 Tax=Mycobacterium sp. E2479 TaxID=1834134 RepID=A0A1A2RZL0_9MYCO) HSP 1 Score: 75.5 bits (184), Expect = 2.280e-12 Identity = 49/131 (37.40%), Postives = 63/131 (48.09%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREA 393 R+ AT EAL S + + V+ GD+TVRTRVYDL + WP YD+ + N F WH EA L A L R A E A DF A + +GEG G+I+ V A + D+ EA Sbjct: 203 RFWATPEALVSRRAQERAVAAGGDDTVRTRVYDLVRRL------DWPAGYDARALV-NAFLKTWHGNEAELSAQLP---------RTVATYERAVAAGDFDTAPILVGEGVGVIHEVRPAADIVADMVTEA 317
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: A0A089NR86_9HYPH (2-nitropropane dioxygenase n=5 Tax=Methylobacteriaceae TaxID=119045 RepID=A0A089NR86_9HYPH) HSP 1 Score: 73.9 bits (180), Expect = 7.870e-12 Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAE 396 R+ AT EAL K ++++ +GD+TVRTRVYD+A RP WP Y + + N F WH +E +L A A R +E+A+ D+ VA V +GE GLI + A V R ++ EAE Sbjct: 199 RFWATREALIHPAAKQRVLAATGDDTVRTRVYDIARQ-RP-----WPASY-TGRLLRNAFIDTWHGREDALHAAAAER---------RRDVEEADAAGDYDVANVTVGEAVGLIEDLPGAGDVVRRIADEAE 314
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Match: B1M0X1_METRJ (2-nitropropane dioxygenase NPD n=14 Tax=Methylobacteriaceae TaxID=119045 RepID=B1M0X1_METRJ) HSP 1 Score: 73.9 bits (180), Expect = 7.920e-12 Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 1 Query: 1 RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYDSSGVASNDFTAKWHTKEASLDATLAIRDGVSGHSRPTAQIEDAERTRDFSVAKVFMGEGAGLIYSVDAAEKVTRDVSREAEDQLDSINRL 423 R+ AT EAL K ++++ +GD+TVRTRVYD+A WP PY + + N F WH +E +L A A R +EDA+ D+ VA V +GE GLI + A + ++ EAE + ++ + Sbjct: 199 RFWATREALIHPAAKQRVLAATGDDTVRTRVYDIARQRA------WPAPY-TGRLLRNAFIETWHGREDALRAASAER---------RRDVEDADAAGDYDVANVTVGEAVGLIDDLPGAGDLVGRIAEEAEAAIRRVSAI 323 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15503.3873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15503.3873.1 >prot_L-elsbetiae_contig15503.3873.1 ID=prot_L-elsbetiae_contig15503.3873.1|Name=mRNA_L-elsbetiae_contig15503.3873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp RYCATYEALGSDDHKAKIVSTSGDETVRTRVYDLAAAVRPHNPVQWPEPYback to top mRNA from alignment at L-elsbetiae_contig15503:481..4061- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15503.3873.1 ID=mRNA_L-elsbetiae_contig15503.3873.1|Name=mRNA_L-elsbetiae_contig15503.3873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3581bp|location=Sequence derived from alignment at L-elsbetiae_contig15503:481..4061- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15503:481..4061- >mRNA_L-elsbetiae_contig15503.3873.1 ID=mRNA_L-elsbetiae_contig15503.3873.1|Name=mRNA_L-elsbetiae_contig15503.3873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig15503:481..4061- (Laminarionema elsbetiae ELsaHSoW15)back to top |