mRNA_L-elsbetiae_contig1550.3871.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1550.3871.1
Unique NamemRNA_L-elsbetiae_contig1550.3871.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1550.3871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1550contigL-elsbetiae_contig1550:23575..24168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size594
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.1236076-UTR-L-elsbetiae_contig1550:23574..237331622815633.1236076-UTR-L-elsbetiae_contig1550:23574..23733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1550 23575..23733 +
1691683003.6933722-UTR-L-elsbetiae_contig1550:23574..237331691683003.6933722-UTR-L-elsbetiae_contig1550:23574..23733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1550 23575..23733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.1390634-CDS-L-elsbetiae_contig1550:23733..241681622815633.1390634-CDS-L-elsbetiae_contig1550:23733..24168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 23734..24168 +
1691683003.7083895-CDS-L-elsbetiae_contig1550:23733..241681691683003.7083895-CDS-L-elsbetiae_contig1550:23733..24168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 23734..24168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1550.3871.1prot_L-elsbetiae_contig1550.3871.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1550 23734..24168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1550.3871.1

>prot_L-elsbetiae_contig1550.3871.1 ID=prot_L-elsbetiae_contig1550.3871.1|Name=mRNA_L-elsbetiae_contig1550.3871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MFARGTCDSLVIRPHVVLRLCTFSVRRAASDALLSLLVVLAAFGLLSSAA
FAHFEVFCFAHRFTDVDVVKRKSIPLFRLCLVQGLLIRLGVLSVLFGFNF
CVSVWRPTFYVDRLLCVASRFPTFIFLVAPGQTSGRITQRTYTA*
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mRNA from alignment at L-elsbetiae_contig1550:23575..24168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1550.3871.1 ID=mRNA_L-elsbetiae_contig1550.3871.1|Name=mRNA_L-elsbetiae_contig1550.3871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1550:23575..24168+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCAGGGACTGTGCCGGGGATGTTTGTTTTCGTAGGAGCAGGCTGTTCC
GTGCTCTTCCTGGGTTCTTTCAGTATTGTCGCGGGAGCTTACCTTATTTC
TGCGACGAATCTGTTCCGTTTCCGTCTTCGGTCTTGGGCCCTGGGGCCTC
GGTTTTTGTATGTTTGCGAGAGGAACATGTGACTCTTTGGTGATACGTCC
GCATGTTGTCTTGCGGCTCTGTACGTTCTCTGTTCGCCGTGCCGCTTCTG
ACGCATTACTCTCTTTGTTGGTGGTACTTGCCGCGTTTGGTCTCCTGTCG
AGTGCTGCTTTTGCACACTTCGAAGTATTTTGCTTTGCACATCGGTTTAC
TGATGTTGATGTGGTGAAGAGGAAAAGTATCCCCCTCTTTCGTCTGTGTC
TCGTTCAGGGCCTGCTTATCCGTCTTGGTGTGCTTTCTGTATTGTTCGGG
TTCAATTTTTGCGTTTCGGTATGGCGCCCTACTTTCTATGTAGATAGATT
GCTCTGCGTGGCATCGCGCTTTCCAACTTTCATTTTTCTTGTGGCACCGG
GACAGACGAGTGGACGAATAACACAACGAACATACACCGCATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1550:23575..24168+

>mRNA_L-elsbetiae_contig1550.3871.1 ID=mRNA_L-elsbetiae_contig1550.3871.1|Name=mRNA_L-elsbetiae_contig1550.3871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1550:23575..24168+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGCGAGAGGAACATGTGACTCTTTGGTGATACGTCCGCATGTTGT
CTTGCGGCTCTGTACGTTCTCTGTTCGCCGTGCCGCTTCTGACGCATTAC
TCTCTTTGTTGGTGGTACTTGCCGCGTTTGGTCTCCTGTCGAGTGCTGCT
TTTGCACACTTCGAAGTATTTTGCTTTGCACATCGGTTTACTGATGTTGA
TGTGGTGAAGAGGAAAAGTATCCCCCTCTTTCGTCTGTGTCTCGTTCAGG
GCCTGCTTATCCGTCTTGGTGTGCTTTCTGTATTGTTCGGGTTCAATTTT
TGCGTTTCGGTATGGCGCCCTACTTTCTATGTAGATAGATTGCTCTGCGT
GGCATCGCGCTTTCCAACTTTCATTTTTCTTGTGGCACCGGGACAGACGA
GTGGACGAATAACACAACGAACATACACCGCATAAATGTTTGCGAGAGGA
ACATGTGACTCTTTGGTGATACGTCCGCATGTTGTCTTGCGGCTCTGTAC
GTTCTCTGTTCGCCGTGCCGCTTCTGACGCATTACTCTCTTTGTTGGTGG
TACTTGCCGCGTTTGGTCTCCTGTCGAGTGCTGCTTTTGCACACTTCGAA
GTATTTTGCTTTGCACATCGGTTTACTGATGTTGATGTGGTGAAGAGGAA
AAGTATCCCCCTCTTTCGTCTGTGTCTCGTTCAGGGCCTGCTTATCCGTC
TTGGTGTGCTTTCTGTATTGTTCGGGTTCAATTTTTGCGTTTCGGTATGG
CGCCCTACTTTCTATGTAGATAGATTGCTCTGCGTGGCATCGCGCTTTCC
AACTTTCATTTTTCTTGTGGCACCGGGACAGACGAGTGGACGAATAACAC
AACGAACATACACCGCATAA
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