mRNA_L-elsbetiae_contig1550.3870.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1550.3870.1
Unique NamemRNA_L-elsbetiae_contig1550.3870.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: D8LKJ1_ECTSI (Arf2A, ARF family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ1_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 3.630e-103
Identity = 153/185 (82.70%), Postives = 168/185 (90.81%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKK 866
            MG II+RL NIL+GL+EKRLLLLGLDAAGKTSLLY+LHLNEVV TIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLW HYF+NTDALIFVVDS+D ERIEEARDE+FH+L+DPNMD CQTVLILLNKQD+ GAI P+ M +KLGLD A  NPL +RNWYMQGCCA+TGEGV+DGLDWL  AL K
Sbjct:    1 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNK 185
[Close]
BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: D8LKJ9_ECTSI (Arf2B, ARF family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ9_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 8.480e-98
Identity = 143/185 (77.30%), Postives = 166/185 (89.73%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKK 866
            MG ++SRLV+IL  LKEKRLLLLGLD AGKTSLLY LHLNE V T+PT+GFN+E+VEYN M+MTIWD+GGQ KLR LWR+YFV+TDALIF+VDSSD  RIEEARDEMFHVLRDPNMD CQTVLI+LNKQDV GA+GP ++I+++GL+SA +NPL+ RNWYMQ CCALTGEGVF GLDWLC+ALKK
Sbjct:    1 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDENRIEEARDEMFHVLRDPNMDGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKK 185
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BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: UPI001929E330 (ADP-ribosylation factor 1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E330)

HSP 1 Score: 209 bits (532), Expect = 2.730e-61
Identity = 101/185 (54.59%), Postives = 135/185 (72.97%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKK 866
            MG+ IS LV +L   KE R+L++GLDAAGKT++LYKL L EV+ TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHYF NT  LIFV+DS+D ERI EAR+E+  +L +  +    T+L+  NKQD+  A+  + + +KLGL S     L++RNWY+Q CCA +GEG+++GLDWL   + K
Sbjct:    1 MGMTISTLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRERIAEARNELHRILSEDELRGA-TLLVFANKQDLPNAMRVSEITDKLGLHS-----LRQRNWYIQSCCAASGEGLYEGLDWLSSNISK 179
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BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: A0A4V1IX66_9FUNG (ADP-ribosylation factor n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IX66_9FUNG)

HSP 1 Score: 207 bits (527), Expect = 1.640e-60
Identity = 101/185 (54.59%), Postives = 137/185 (74.05%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKK 866
            MG+ ISRL+  L G KE R+L++GLDAAGKT++LYKL L EVV TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHYF NT  +I+VVDS+D  RIE+ARDE+  +L +  + +   +LI  NKQD+ GA+ PA + ++LGL S     L++R WY+Q  CA +G+G+++GL+WL   LK+
Sbjct:    1 MGMSISRLMQSLLGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIYVVDSNDRGRIEDARDELQRMLNEDELRNA-VLLIFANKQDLPGAMNPAEITDQLGLHS-----LRQRTWYIQATCATSGDGLYEGLEWLSTTLKR 179
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BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: A0A8B6D2T4_MYTGA (ADP-ribosylation factor n=3 Tax=Pteriomorphia TaxID=6545 RepID=A0A8B6D2T4_MYTGA)

HSP 1 Score: 207 bits (526), Expect = 2.090e-60
Identity = 100/186 (53.76%), Postives = 134/186 (72.04%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKKN 869
            MG +  +L + L G KE R+L++GLDAAGKT++LYKL L E+V TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHYF NT  LIFVVDS+D ERI EAR+E+  +L++  +     +L+  NKQD+  A+  A + +KLGL S     L++R WY+Q  CA +G+G+++GLDWL   LKKN
Sbjct:    1 MGSVFGKLFSSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERINEAREELHRMLQEDELRDA-VLLVFCNKQDLPNAMNAAEVTDKLGLHS-----LRQRGWYIQATCATSGDGLYEGLDWLSNTLKKN 180
[Close]
BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: ARF_DUGJA (ADP-ribosylation factor n=3 Tax=Eumetazoa TaxID=6072 RepID=ARF_DUGJA)

HSP 1 Score: 207 bits (526), Expect = 2.230e-60
Identity = 99/184 (53.80%), Postives = 134/184 (72.83%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALK 863
            MG +++ L++ L G KE R+L++GLDAAGKT++LYKL L E+V TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHYF NT  LIFVVDS+D ER+ EAR+E+  +L +  +     +L+  NKQD+  A+ PA + +KLGL S RN     R+WY+Q  CA +G+G+++GLDWL   LK
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDA-VLLVFANKQDLPNAMNPAEITDKLGLHSLRN-----RSWYIQATCATSGDGLYEGLDWLSTTLK 178
[Close]
BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: A0A0A0KID8_CUCSA (ADP-ribosylation factor n=5 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0KID8_CUCSA)

HSP 1 Score: 206 bits (525), Expect = 2.940e-60
Identity = 103/179 (57.54%), Postives = 131/179 (73.18%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWL 848
            MG+ ISRLV +L   KE R+L++GLDAAGKT++LYKL L E+V TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHYF NT  LIFVVDS+D ERI EARDE+  +L +  +    TVL+  NKQD+  A+  A + +KLGL S RN     R WY+Q  CA +G+G+++GLDWL
Sbjct:    1 MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDA-TVLVFANKQDLPNAMTVAEITDKLGLHSLRN-----RRWYIQATCATSGQGLYEGLDWL 173
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BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: A0A0L0T0R5_ALLM3 (ADP-ribosylation factor n=4 Tax=Fungi incertae sedis TaxID=112252 RepID=A0A0L0T0R5_ALLM3)

HSP 1 Score: 206 bits (525), Expect = 2.940e-60
Identity = 101/185 (54.59%), Postives = 136/185 (73.51%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKK 866
            MGL IS+L++ L G KE R+L++GLDAAGKT++LYKL L E+V TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHYF NT  +IFVVDS+D ERI EARDE+  +L +  +     +L+  NKQD+  A+  A + +KLGL S     L++R+WY+Q  CA +G+G+++GL+WL   LKK
Sbjct:    1 MGLSISKLLSSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERINEARDELQRMLNEDELRDA-ILLVFANKQDLPNAMQAAEITDKLGLQS-----LRQRDWYIQATCATSGDGLYEGLEWLSSTLKK 179
[Close]
BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: B6AJX4_CRYMR (ADP-ribosylation factor n=7 Tax=Cryptosporidium TaxID=5806 RepID=B6AJX4_CRYMR)

HSP 1 Score: 206 bits (525), Expect = 3.030e-60
Identity = 101/186 (54.30%), Postives = 137/186 (73.66%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNM-DSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKK 866
            MGL +SR+ N L G +E R+L++GLDAAGKT++LYKL L EVV TIPTIGFNVE VEY  +  T+WD+GGQ K+RPLWRHY+ NTD LIFVVDS+D +RI ++RDE+  +L +  + D+C  +++L NKQD+  A+    +  KL L S R+     RNWY+Q  CA TG+G+++GLDWL + L+K
Sbjct:    1 MGLALSRIWNRLFGKREMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYTNTDGLIFVVDSNDRDRINDSRDELMRMLSEDELRDAC--LVVLANKQDLPNAMSVTEVTEKLQLSSIRH-----RNWYIQSTCATTGDGLYEGLDWLARNLEK 179
[Close]
BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Match: A0A0L1KMW9_9EUGL (ADP-ribosylation factor n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KMW9_9EUGL)

HSP 1 Score: 206 bits (524), Expect = 4.260e-60
Identity = 99/186 (53.23%), Postives = 137/186 (73.66%), Query Frame = 3 
Query:  312 MGLIISRLVNILSGLKEKRLLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSCQTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTGEGVFDGLDWLCQALKKN 869
            MG I+S ++  L G  E R+L++GLDAAGKT++LYKL L E+V TIPTIGFNVE VEY  +  T+WD+GGQ KLRPLWRHYF NT+ +IFVVDS+D ER+ +AR+E+  +L +  +     +L+  NKQD+  A+  A + +K+GL S     L++R+WY+QGCCA +GEG+++GLDWL   +KKN
Sbjct:    1 MGQILSSMLKNLFGKTEARILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNLKFTVWDVGGQDKLRPLWRHYFQNTNGVIFVVDSNDKERVTQARNELTKMLLEDELRDA-VLLVFANKQDLPNAMTTAELTDKIGLHS-----LRQRSWYIQGCCATSGEGLYEGLDWLATNVKKN 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1550.3870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKJ1_ECTSI3.630e-10382.70Arf2A, ARF family GTPase n=1 Tax=Ectocarpus silicu... [more]
D8LKJ9_ECTSI8.480e-9877.30Arf2B, ARF family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
UPI001929E3302.730e-6154.59ADP-ribosylation factor 1-like n=1 Tax=Dioscorea c... [more]
A0A4V1IX66_9FUNG1.640e-6054.59ADP-ribosylation factor n=1 Tax=Thamnocephalis sph... [more]
A0A8B6D2T4_MYTGA2.090e-6053.76ADP-ribosylation factor n=3 Tax=Pteriomorphia TaxI... [more]
ARF_DUGJA2.230e-6053.80ADP-ribosylation factor n=3 Tax=Eumetazoa TaxID=60... [more]
A0A0A0KID8_CUCSA2.940e-6057.54ADP-ribosylation factor n=5 Tax=Benincaseae TaxID=... [more]
A0A0L0T0R5_ALLM32.940e-6054.59ADP-ribosylation factor n=4 Tax=Fungi incertae sed... [more]
B6AJX4_CRYMR3.030e-6054.30ADP-ribosylation factor n=7 Tax=Cryptosporidium Ta... [more]
A0A0L1KMW9_9EUGL4.260e-6053.23ADP-ribosylation factor n=1 Tax=Perkinsela sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1550contigL-elsbetiae_contig1550:4303..8147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue7.6e-85
Seed eggNOG ortholog2880.D8LKJ1
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0070@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Ec32 ortholog descriptionArf2A, ARF family GTPase
Ec32 orthologEc-16_003150.1
Exons6
Model size1675
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1550.3870.1prot_L-elsbetiae_contig1550.3870.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1550 4371..7344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.1820397-UTR-L-elsbetiae_contig1550:4302..43701622815633.1820397-UTR-L-elsbetiae_contig1550:4302..4370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1550 4303..4370 +
1691683003.717684-UTR-L-elsbetiae_contig1550:4302..43701691683003.717684-UTR-L-elsbetiae_contig1550:4302..4370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1550 4303..4370 +
1622815633.283428-UTR-L-elsbetiae_contig1550:7344..81471622815633.283428-UTR-L-elsbetiae_contig1550:7344..8147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1550 7345..8147 +
1691683003.787741-UTR-L-elsbetiae_contig1550:7344..81471691683003.787741-UTR-L-elsbetiae_contig1550:7344..8147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1550 7345..8147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.1932974-CDS-L-elsbetiae_contig1550:4370..46611622815633.1932974-CDS-L-elsbetiae_contig1550:4370..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 4371..4661 +
1691683003.729996-CDS-L-elsbetiae_contig1550:4370..46611691683003.729996-CDS-L-elsbetiae_contig1550:4370..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 4371..4661 +
1622815633.2066736-CDS-L-elsbetiae_contig1550:5037..50911622815633.2066736-CDS-L-elsbetiae_contig1550:5037..5091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 5038..5091 +
1691683003.7379866-CDS-L-elsbetiae_contig1550:5037..50911691683003.7379866-CDS-L-elsbetiae_contig1550:5037..5091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 5038..5091 +
1622815633.2230763-CDS-L-elsbetiae_contig1550:5577..56721622815633.2230763-CDS-L-elsbetiae_contig1550:5577..5672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 5578..5672 +
1691683003.748274-CDS-L-elsbetiae_contig1550:5577..56721691683003.748274-CDS-L-elsbetiae_contig1550:5577..5672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 5578..5672 +
1622815633.2396412-CDS-L-elsbetiae_contig1550:6177..63671622815633.2396412-CDS-L-elsbetiae_contig1550:6177..6367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 6178..6367 +
1691683003.7576418-CDS-L-elsbetiae_contig1550:6177..63671691683003.7576418-CDS-L-elsbetiae_contig1550:6177..6367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 6178..6367 +
1622815633.2559159-CDS-L-elsbetiae_contig1550:6496..65951622815633.2559159-CDS-L-elsbetiae_contig1550:6496..6595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 6497..6595 +
1691683003.7680984-CDS-L-elsbetiae_contig1550:6496..65951691683003.7680984-CDS-L-elsbetiae_contig1550:6496..6595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 6497..6595 +
1622815633.2701597-CDS-L-elsbetiae_contig1550:7269..73441622815633.2701597-CDS-L-elsbetiae_contig1550:7269..7344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 7270..7344 +
1691683003.7780025-CDS-L-elsbetiae_contig1550:7269..73441691683003.7780025-CDS-L-elsbetiae_contig1550:7269..7344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1550 7270..7344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1550.3870.1

>prot_L-elsbetiae_contig1550.3870.1 ID=prot_L-elsbetiae_contig1550.3870.1|Name=mRNA_L-elsbetiae_contig1550.3870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=268bp
MHVLLERSDWSIFKQCLACSDWRNEGQFRRIPDMTFMRLAFAPQPTPTPP
KALFIAAETRPPAVQESLPLATNLLPVHDKQMGLIISRLVNILSGLKEKR
LLLLGLDAAGKTSLLYKLHLNEVVQTIPTIGFNVERVEYNRMMMTIWDIG
GQTKLRPLWRHYFVNTDALIFVVDSSDLERIEEARDEMFHVLRDPNMDSC
QTVLILLNKQDVAGAIGPAMMINKLGLDSARNNPLKRRNWYMQGCCALTG
EGVFDGLDWLCQALKKN*
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mRNA from alignment at L-elsbetiae_contig1550:4303..8147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1550.3870.1 ID=mRNA_L-elsbetiae_contig1550.3870.1|Name=mRNA_L-elsbetiae_contig1550.3870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3845bp|location=Sequence derived from alignment at L-elsbetiae_contig1550:4303..8147+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTTACGACAGTTTATTGGGAAATACAGCAGGTAGAGGATCGGCGGT
CGGTGGTCGGTGGGCCGAATGCATGTGTTGTTGGAACGATCTGATTGGTC
AATTTTCAAACAGTGCCTGGCGTGTTCTGATTGGCGCAACGAGGGGCAGT
TCCGCCGCATTCCGGATATGACTTTCATGCGTCTTGCCTTCGCCCCACAA
CCAACACCAACACCGCCCAAAGCGCTCTTTATAGCTGCAGAAACAAGACC
ACCAGCCGTACAGGAATCTCTCCCGCTAGCGACGAATCTTCTCCCGGTAC
ACGACAAGCAAATGGGGCTCATAATTTCGCGCCTCGTCAACATCCTGAGT
GGTCTGAAGGTGAGATATCTGGGCGGTCGTGTACCATGCCGCGACGCCGC
GACCATGAATATCAGCGTTACATTCATGTTCATACCTCGGTCGTTTGTTT
GTGATCAAACCACAACCTCGGGAAATACTTTTGCCGTACTTACGAGCTTG
TATGCTATATTGGCGAACGGGCTGGCGTGTCGCACAGCAAGACCCTGAAC
ACGCCTTACGTAGATGCCCCCTGTGAACACGGGCCCGTTGGTTCGACGTC
GCCAAAACAATACATACCTTAGATACGGTTTCCAGCCACCCTTCCAAGCA
CTGCTATGCTTGCTAGCTTGTTGTCCGTGTCTCGGATTTTTCTCAAGTAG
TGCGGTGTTTTTTGTGTTCCCCTGTCCGGCTGTAGGAAAAGCGCCTTCTC
CTACTTGGCCTGGACGCTGCCGGCAAGACGTCGCTCTTGGTGAGTCACAG
AAGTATATCGTCTTCATCAATGTGTCAACCAAATAGTTGATGGCGTAAGA
TACCATCTACAGGATCGACTCTCTCACACCATCTCACACCACACCTGACG
CTCACTTTTGTGTGGCGTGGTTTGCCACGTGGTCGTCTCTAGATAATACA
TATCCTACAACAACAGCAGCAGCAATTCTATTTATCTATTTATGTAGATG
CATCGCACCCTTCGGATACATACGCGTGCAGAAAATCTAGCAGCCTGGTA
TCTTGCGGAAACCAACAGAGTTTGCTCGGAACAAGGCGCAAACTTCGCTG
TATTTTCATTCCCCATTCGGGTAAAGAGAGGGAGGTATAGTCATGGCGAC
GTAAGTTGCACGTGCTCACCGCTGCTTGTACCCATCGGCAGGGCTTGTGC
GACCTCTAAACTAACGTGGTGCTTTCGTTCCCCCTTTGTTATATGTGTAC
TGTCATTGACTGTGCGATGAAACAGTACAAGCTCCACCTAAACGAGGTCG
TGCAAACCATCCCCACCATCGGCTTTAACGTGGAACGGGTCGAGTACAAC
AGGATGATGATGACTATATGGTGAGCGCCGGTATCATCAACGTACAAACA
CTGGTAAATTGGTCTGCACGTGCGTTATTGGTGCGCTGCGAAGTCTCCAA
ACGTACGCGACATTGTCTATTATTATTGCATTGCATTGCATGACAGGCAA
TTTTGAAGCAGAAAATGGAAAAATGATGTTGTCTCTCAAATGTTTTTTCT
CGCGCCCCCCATCCATTTGTAGGCTGCATCGCTGCAGATGAAAAGTGATA
CCAACAACCCGTACTTTTGTTCGTCGTCAAACAAATGTATGTATGTGGTG
TGACACAGGAATTATTATTTTGTTTCATGTCGACCACGTCGTCTCCTGAA
TCGTACTAATACCATTGTCCACAAGAAGCGCCCTTTTCGCAGTTACATAG
TTAGATCACCTTACGATCAATCAACGTCCCATTTGGCGTCAAAGGTGCTT
CCGCGCACACACACACCTATTTTGGCATATATATGATGATACCGTTTCAT
TCCTTCGGCACGTCCCTTCCACCAGGGACATCGGGGGCCAAACTAAGCTG
CGGCCGCTCTGGCGTCACTACTTCGTCAACACTGACGCCTTGATTTTCGT
TGTGGACTCGTCCGATCTCGAGCGCATCGAGGAAGCGAGGGACGAGATGT
TCCACGTCCTCAGGGACCCCAACATGGACAGCTGCCAGACCGTCTTGATT
TTGCTCAACAAGCAGGTGAATATTAAGTGTTGCAGCAAAGCTCTACGTTC
CATATTATTGAGTGCTGCAGCAAAGCCACAGTAGTAAGAATCTTCGATCA
AGCTTCCCTCCCGCCCCCTGTCCTCCTCATCTTCTCTTCTATAGGACGTT
GCCGGCGCGATCGGCCCTGCCATGATGATCAACAAGCTCGGCCTTGATAG
CGCGAGAAATAACCCTCTCAAGAGGCGCAACTGGTACATGCAGGTTAGTT
TATCACAACAATTATTTGGGGTCTTTGTTTTTTGTGTGGCGTTGTTTTTC
AGCAGGGCTCGGGGGAGTATATACTAATATCGAAAGCAAGATGCTTCATC
AATGCGGCAATCCCAACGCGGGCAGGTTTTCTTGAATATTATGCATCGTA
AAAGAGGAGGACTAGTTGGAGGCCCGGTCATTTTCTCGTGCAGAAAGTCA
GGCCTTTCCTCACAAGGAAGGGTGGGTAGATTCGTAGATTCGTCTGACGT
CATCTCCCGTGCCTCCTTCTTCGTTGCTTCAAGCACTCCTTTTGAGGTTT
TAAGCGGTTACTGCTGCGCGTGTCGTCGTTACTCTGCTGCTGTATTGTCC
GTGCCGTAGAGAGTCTTGTTCTTTTGTATCTTGACACGTGGATATAACAC
ATACTCCTATTCTTTACGCATTGAGAAAAACGCCATCCAAGGTCACAGGC
TCATCATCAAGAAGAGTGTTCTGGCCCAGAAAAAAACAAAACCCTTCTAA
ATTTGCTCGGACCCTCGTCCGAGCGCTGGTAAACGTGTGGGTATCCGTGA
GAAAAAATAAAATAAAACTTAAGTAGTCATTACCCAAGAACTCAGAACCG
TTCCTCCGATACATCATACTATATTGTGCTTTGTTTGTTCTTTCTTTTGG
CCTCGCTGTCCACTCAGGGCTGTTGTGCGCTCACAGGCGAGGGGGTCTTC
GACGGTCTCGATTGGCTTTGCCAAGCGCTTAAGAAGAATTAATGGCATCA
GCGTCAGAACCATCATCGCGAAGGAAAGGGTGGTTCACACAGACCATAGC
TGCAGAGCAGCAGGGTGTGTGCACAGGCGGCGGGTGGTGTGTATCTAGGC
TGCAGAACGAAACCTTGTTCTTGTAGAAGAGGGTGATTGATGCGCTAAGA
AGCAACGTCAACCAATCTGTGTGTTAACCAAATGTAGACTAGATATAGAC
TATCTATGGCGCTGGTACACGAAAGGCAATGGAAATAATGATGAGTACCG
TTGAGGATGATGCTCGCCTAAATACCAGTCAAGTAGAAGTATGTCCGTAT
TGTACACCCGAGTTAGAACCGTTTTTTCGTGCATGTCGTGAGTGCTGTAC
ACAGCGAGTGGTGGTATTCACGTAGTAAACGATGATAGTGTTGAAGAGTG
TTGTGCACCGAACACAAGTGGTAACGTTTTCATGTATCACACGGTAGTTC
ACGGAGCCGGGAATTCAAGAATTTGTATGTCTCACACTAAATAAAGGGTG
TGGTGCAGAGGTACATATATATGGCTGCGAATGGGCATCACCGCATCTCG
TTTGGAAACGAGGTCAACATTTATGCGGCGCAAGACTTGACTTGAGGGGG
GAACGGCAAGAAAACTACGACACAAGTCAGGATGTAGTACAATGTATGAT
ACCGGAGAATCTGCCATAAAAAAAGAAGAATCGCTGATCTTCAAAAGGAA
CTAAATTTGTAGTCATCCGTAACTAGCGACGACTCGCAACGAACGACGTA
ACAAATGCAGGGTCAAGTTCTCGTTTTCTTCGCTGTGCACGCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1550:4303..8147+

>mRNA_L-elsbetiae_contig1550.3870.1 ID=mRNA_L-elsbetiae_contig1550.3870.1|Name=mRNA_L-elsbetiae_contig1550.3870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig1550:4303..8147+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGTGTTGTTGGAACGATCTGATTGGTCAATTTTCAAACAGTGCCT
GGCGTGTTCTGATTGGCGCAACGAGGGGCAGTTCCGCCGCATTCCGGATA
TGACTTTCATGCGTCTTGCCTTCGCCCCACAACCAACACCAACACCGCCC
AAAGCGCTCTTTATAGCTGCAGAAACAAGACCACCAGCCGTACAGGAATC
TCTCCCGCTAGCGACGAATCTTCTCCCGGTACACGACAAGCAAATGGGGC
TCATAATTTCGCGCCTCGTCAACATCCTGAGTGGTCTGAAGATGCATGTG
TTGTTGGAACGATCTGATTGGTCAATTTTCAAACAGTGCCTGGCGTGTTC
TGATTGGCGCAACGAGGGGCAGTTCCGCCGCATTCCGGATATGACTTTCA
TGCGTCTTGCCTTCGCCCCACAACCAACACCAACACCGCCCAAAGCGCTC
TTTATAGCTGCAGAAACAAGACCACCAGCCGTACAGGAATCTCTCCCGCT
AGCGACGAATCTTCTCCCGGTACACGACAAGCAAATGGGGCTCATAATTT
CGCGCCTCGTCAACATCCTGAGTGGTCTGAAGGAAAAGCGCCTTCTCCTA
CTTGGCCTGGACGCTGCCGGCAAGACGTCGCTCTTGGAAAAGCGCCTTCT
CCTACTTGGCCTGGACGCTGCCGGCAAGACGTCGCTCTTGTACAAGCTCC
ACCTAAACGAGGTCGTGCAAACCATCCCCACCATCGGCTTTAACGTGGAA
CGGGTCGAGTACAACAGGATGATGATGACTATATGTACAAGCTCCACCTA
AACGAGGTCGTGCAAACCATCCCCACCATCGGCTTTAACGTGGAACGGGT
CGAGTACAACAGGATGATGATGACTATATGGGACATCGGGGGCCAAACTA
AGCTGCGGCCGCTCTGGCGTCACTACTTCGTCAACACTGACGCCTTGATT
TTCGTTGTGGACTCGTCCGATCTCGAGCGCATCGAGGAAGCGAGGGACGA
GATGTTCCACGTCCTCAGGGACCCCAACATGGACAGCTGCCAGACCGTCT
TGATTTTGCTCAACAAGCAGGGACATCGGGGGCCAAACTAAGCTGCGGCC
GCTCTGGCGTCACTACTTCGTCAACACTGACGCCTTGATTTTCGTTGTGG
ACTCGTCCGATCTCGAGCGCATCGAGGAAGCGAGGGACGAGATGTTCCAC
GTCCTCAGGGACCCCAACATGGACAGCTGCCAGACCGTCTTGATTTTGCT
CAACAAGCAGGACGTTGCCGGCGCGATCGGCCCTGCCATGATGATCAACA
AGCTCGGCCTTGATAGCGCGAGAAATAACCCTCTCAAGAGGCGCAACTGG
TACATGCAGGACGTTGCCGGCGCGATCGGCCCTGCCATGATGATCAACAA
GCTCGGCCTTGATAGCGCGAGAAATAACCCTCTCAAGAGGCGCAACTGGT
ACATGCAGGGCTGTTGTGCGCTCACAGGCGAGGGGGTCTTCGACGGTCTC
GATTGGCTTTGCCAAGCGCTTAAGAAGAATTAAGGCTGTTGTGCGCTCAC
AGGCGAGGGGGTCTTCGACGGTCTCGATTGGCTTTGCCAAGCGCTTAAGA
AGAATTAA
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