mRNA_L-elsbetiae_contig1548.3857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1548.3857.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE) HSP 1 Score: 491 bits (1264), Expect = 5.230e-155 Identity = 326/583 (55.92%), Postives = 388/583 (66.55%), Query Frame = 3 Query: 15 DNKGCFTDGCGPELMLDGLENDIPESRWSCEEALPGTITECYATFDLGSSFTLTKLSMWFHESFDTTRETRAFAVSTSDDGSAFADSFEAENTAGLSVGVADDFPFPAGSSGQFVRVTGLLLPDQWLSISEVEVFVDVATPAPV-PATASPIPPTTAPTTASIPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVDTTAPMVTTPSPTVVSGEACANVTVSNAGELSGVYSSA---DGTSDYVSTGTNAATLAASQTPAVCADPSTADCTVQRWQIRPQDDASTLPSYVVYDEAAHPSDIVQVWLRLDGCDTSGCTSSPTDVNILCGDGSKA-GSATPAPVSPTSSDCGIIEVAGTSGAVGDGFYYDDGSSPANGVTQYQGYDDANGELTSNGNAVVSKRVDTTCTSTSTVTSANADACSWRQWWIEPASTDALDYYTFDEANHPVDIAPGALWYTSNLTVVPYDGDVTITCAPATTPTLEVPITPAPTRGEYADDDLTRAPVPASSNRSTES-VADSAEESEGDSNTVAIAGGVVGGVALLAIVGAVAYKLKKAPXXXXSYDDLVG 1745 D+ GC TDGC P+LM DG ND+PESRWSCE AL GT ECYATFDLGSS +LTKL+++F++ D R T F VSTS DG+ + SFE NT ++G +DF FP GSSG++VR TG L DQWLSI+E E++VDVATPAPV P T + XXXXXXXXXXXXXXXXXXXXXXX XXXX T V + G AC NVTVSNAG+L+G Y+S+ DG+ YVSTG AAT+++S PA CAD + +DC V RWQI P D STLP+Y VYDEA HPS I +VWLRLD C T GC SSP ++ ILCGDG+ A GS TPAP S T+SDCG+IEVAGTSGA DGFYYDDGS + VTQY GYD NGEL SNG AVV+ RV++TC +TS+ S ADACSWRQWWIE +S+ + Y+T+DEA+HPVDIA GALWYTS+ +++PYDG V +TCAPATTPTL +P PT + D TR PV + + T + V E V GGVALLAI+GAVAYK K P SYDD +G Sbjct: 46 DSNGCGTDGCSPDLMNDGDLNDVPESRWSCETALAGTEFECYATFDLGSSQSLTKLTIYFYKCDDVDRATNPFIVSTSTDGTTYTTSFEDVNTIPTAIGAGEDFAFPTGSSGRYVRFTGELADDQWLSINEAEIYVDVATPAPVVPEXXXXXXXXXXXPTVEVTXXXXXXXXXXXXXXXXXXXXXXXXTSGSRAIGITXXXXAASIAPTGVXXXXXXXXXXXXPI-GGPACGNVTVSNAGDLNGDYASSLNGDGSVMYVSTGVIAATISSSAAPAQCADSTASDCNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGSGTPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGELMSNGRAVVANRVNSTCATTSS--STGADACSWRQWWIEASSSGTVSYFTYDEADHPVDIAAGALWYTSDGSIMPYDGAVAVTCAPATTPTLTPATSPVPTTDD--DGTATRMPVEGTHSPGTAAPVVPGGEXXXXXXXXXXXXXXVAGGVALLAILGAVAYKFKDPPP---SYDDAMG 620
BLAST of mRNA_L-elsbetiae_contig1548.3857.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI) HSP 1 Score: 356 bits (914), Expect = 2.540e-108 Identity = 216/358 (60.34%), Postives = 247/358 (68.99%), Query Frame = 3 Query: 717 VSNAGELSGVYSSA---DGTSDYVSTGTNAATLAASQTPAVCADPSTADCTVQRWQIRPQDDASTLPSYVVYDEAAHPSDIVQVWLRLDGCDTSGCTSSPTDVNILCGDGSKA-GSATPAPVSPTSSDCGIIEVAGTSGAVGDGFYYDDGSSPANGVTQYQGYDDANGELTSNGNAVVSKRVDTTCTSTSTVTSANADACSWRQWWIEPASTDALDYYTFDEANHPVDIAPGALWYTSNLTVVPYDGDVTITCAPATTPTLEVPITPAPTR------GEYADDDLTRAPVPASSNRSTES-VADSAEESEGDSNTVAIAGG----VVGGVALLAIVGAVAYKLKKAPXXXXSYDDLVG 1745 VSNAG+L+G Y+S+ DG+ YVSTG AATLA+S PA CAD S +DCTV RWQI P D STLP+YVVYDEA HPS I +VWLRLD C T GC SSP ++ I+CGDG+ A GS TPAPVS T+SDC IEVAGTSGA DGFYYDDGS +GVTQY GYD NGELTSNG AVV+ RVD+TC +T+T S ADACSWRQWWIEP+S+ + Y+T+DEA HPVDIA G LWYTS+ TVVPYDGDV +TCAPATTP G D TR PV + T + V E+ +GD V GGVALLAI+GAVAYKLK XXXXSYDDLVG Sbjct: 3 VSNAGDLNGDYASSLNGDGSVTYVSTGVIAATLASSDAPAQCADSSASDCTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGSGTPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELTSNGRAVVANRVDSTCATTTT--STGADACSWRQWWIEPSSSGTVSYFTYDEAGHPVDIAAGTLWYTSDDTVVPYDGDVVVTCAPATTPXXXXXXXXXXXXXXXXXDGGNDDGTATRMPVEGTHAPGTVAPVVAGGEDGDGDXXXXXXXXXXXXXVAGGVALLAILGAVAYKLKXXXXXXXSYDDLVG 358
BLAST of mRNA_L-elsbetiae_contig1548.3857.1 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI) HSP 1 Score: 150 bits (380), Expect = 2.670e-38 Identity = 78/130 (60.00%), Postives = 96/130 (73.85%), Query Frame = 3 Query: 57 MLDGLENDIPESRWSCEEALPGTITECYATFDLGSSFTLTKLSMWFHESFDTTRETRAFAVSTSDDGSAFADSFEAENTAGLSVGVADDFPFPAGSSGQFVRVTGLLLPDQWLSISEVEVFVDVATPAPV 446 M DG ND+P+SRWSCE AL GT ECYATFDLGSS +L KL+++F++S + R T F VSTS DG+ F SFE NT +G +DF FP GSSG++VR TG L DQWLS++EVE++VDVATPAPV Sbjct: 1 MNDGNLNDVPDSRWSCETALEGTEFECYATFDLGSSQSLIKLTIYFYKSNEEDRVTNPFVVSTSTDGTTFTTSFEDINTIPTPLGEGEDFAFPTGSSGRYVRFTGDLADDQWLSVNEVEIYVDVATPAPV 130 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1548.3857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1548.3857.1 >prot_L-elsbetiae_contig1548.3857.1 ID=prot_L-elsbetiae_contig1548.3857.1|Name=mRNA_L-elsbetiae_contig1548.3857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=565bp MLDGLENDIPESRWSCEEALPGTITECYATFDLGSSFTLTKLSMWFHESFback to top mRNA from alignment at L-elsbetiae_contig1548:2609..14531+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1548.3857.1 ID=mRNA_L-elsbetiae_contig1548.3857.1|Name=mRNA_L-elsbetiae_contig1548.3857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11923bp|location=Sequence derived from alignment at L-elsbetiae_contig1548:2609..14531+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1548:2609..14531+ >mRNA_L-elsbetiae_contig1548.3857.1 ID=mRNA_L-elsbetiae_contig1548.3857.1|Name=mRNA_L-elsbetiae_contig1548.3857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3390bp|location=Sequence derived from alignment at L-elsbetiae_contig1548:2609..14531+ (Laminarionema elsbetiae ELsaHSoW15)back to top |