mRNA_L-elsbetiae_contig15311.3769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15311.3769.1
Unique NamemRNA_L-elsbetiae_contig15311.3769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: D7FR93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR93_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.860e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    4 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE
Sbjct:    2 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 97
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BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.930e-54
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    4 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE
Sbjct: 1738 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 1833
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.360e-46
Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            QMMLAGMG+LNT+PMLATL VEKGL  AL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE
Sbjct: 1823 QMMLAGMGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFE 1919
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.960e-46
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            QM+LAGMG+LNT+PMLATL VEKGL  AL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE
Sbjct: 1424 QMLLAGMGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFE 1520
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.370e-37
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            Q++LAG+GLLNT+P+LATL VE+GLL A  +V QVF SGGP+YF+FHIQTRAHYF QTLLAGGA YRATGRGFVT H+ FD+ YRFFA SH YLG E
Sbjct: 1803 QVVLAGLGLLNTLPLLATLAVERGLLAATRDVAQVFASGGPLYFVFHIQTRAHYFMQTLLAGGATYRATGRGFVTTHNSFDEQYRFFAASHLYLGVE 1899
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.200e-36
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            QM L GMG+L T+PM +TL VEKG+  A+G VLQVF SGGP+YFMFHIQT+++YF QTLLAG A+YR TGRGFVT HS FD+ +RFFA+SHFYLGFE
Sbjct: 1201 QMCLGGMGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFE 1297
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 140 bits (352), Expect = 1.650e-36
Identity = 70/97 (72.16%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            Q++LAG+GLLNT+P+LATL VE+GL  A  +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFVT HS FD+ YRFFA SH +LG E
Sbjct: 1899 QILLAGLGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVE 1995
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.100e-33
Identity = 63/97 (64.95%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            Q++L+GMG+L TMP+L TLTVEKG+L A+ E+  + LSGGP+YF+FHI+T+++YF QTL+AGGA+YR TGR FVT HS FD+ +RFFA+SH YLGFE
Sbjct:  261 QLLLSGMGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFE 357
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.840e-33
Identity = 63/97 (64.95%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            QM+L GMGL+NT+P+ ATL VE+G   ++ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA+YRATGRGFVT HS F + +RFFA+SH YLG E
Sbjct: 1647 QMLLGGMGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVE 1743
[Close]
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.810e-33
Identity = 60/97 (61.86%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 291
            QM+L G+GLL T+P++ATL VE+G L A+ ++  VF++GGP++FMFHIQT+AHY  QT+L GGA+YR TGRGFVT H+  D+ +RFFA+SH YLGFE
Sbjct:  216 QMLLGGLGLLQTIPLIATLGVERGWLAAVQDIFSVFVTGGPLHFMFHIQTKAHYMAQTILVGGAKYRPTGRGFVTQHTPMDEQFRFFASSHLYLGFE 312
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15311.3769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR93_ECTSI1.860e-61100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFR3_9PHAE1.930e-54100.001,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z1S2_9STRA2.360e-4688.661,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z4B5_9STRA5.960e-4687.631,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A8J2T241_9STRA1.370e-3774.231,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]
A0A7S2UV62_9STRA1.200e-3671.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YA81_AURAN1.650e-3672.161,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
A0A7S3H8Z7_9STRA1.100e-3364.95Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2QVX6_9STRA2.840e-3364.951,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A7S0GHQ8_9STRA6.810e-3361.86Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15311contigL-elsbetiae_contig15311:228..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.3e-46
Seed eggNOG ortholog2880.D7FR93
KEGG koko:K11000
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-08_004910.1
Exons1
Model size291
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.980953-CDS-L-elsbetiae_contig15311:227..5151622815623.980953-CDS-L-elsbetiae_contig15311:227..515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15311 228..515 -
1691682997.9768803-CDS-L-elsbetiae_contig15311:227..5151691682997.9768803-CDS-L-elsbetiae_contig15311:227..515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15311 228..515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.9994118-UTR-L-elsbetiae_contig15311:515..5181622815623.9994118-UTR-L-elsbetiae_contig15311:515..518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15311 516..518 -
1691682998.0031793-UTR-L-elsbetiae_contig15311:515..5181691682998.0031793-UTR-L-elsbetiae_contig15311:515..518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15311 516..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15311.3769.1prot_L-elsbetiae_contig15311.3769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15311 228..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15311.3769.1

>prot_L-elsbetiae_contig15311.3769.1 ID=prot_L-elsbetiae_contig15311.3769.1|Name=mRNA_L-elsbetiae_contig15311.3769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTR
AHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE
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mRNA from alignment at L-elsbetiae_contig15311:228..518-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15311.3769.1 ID=mRNA_L-elsbetiae_contig15311.3769.1|Name=mRNA_L-elsbetiae_contig15311.3769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig15311:228..518- (Laminarionema elsbetiae ELsaHSoW15)
CAGATGATGCTCGCGGGCATGGGCCTCCTCAACACGATGCCCATGCTGGC
CACGCTGACCGTAGAGAAGGGGCTCCTCGTGGCGCTCGGAGAGGTCCTCC
AGGTCTTCCTCAGCGGCGGCCCGATGTACTTCATGTTCCACATCCAGACG
CGCGCGCACTACTTCTACCAGACGCTGCTGGCGGGCGGGGCCCAGTACCG
CGCCACGGGCAGGGGCTTCGTGACTCACCACTCCTGCTTCGACGACCTGT
ACCGCTTCTTCGCGAACTCGCACTTCTACCTCGGCTTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15311:228..518-

>mRNA_L-elsbetiae_contig15311.3769.1 ID=mRNA_L-elsbetiae_contig15311.3769.1|Name=mRNA_L-elsbetiae_contig15311.3769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig15311:228..518- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCTCGCGGGCATGGGCCTCCTCAACACGATGCCCATGCTGGCCAC
GCTGACCGTAGAGAAGGGGCTCCTCGTGGCGCTCGGAGAGGTCCTCCAGG
TCTTCCTCAGCGGCGGCCCGATGTACTTCATGTTCCACATCCAGACGCGC
GCGCACTACTTCTACCAGACGCTGCTGGCGGGCGGGGCCCAGTACCGCGC
CACGGGCAGGGGCTTCGTGACTCACCACTCCTGCTTCGACGACCTGTACC
GCTTCTTCGCGAACTCGCACTTCTACCTCGGCTTCGAGATGATGCTCGCG
GGCATGGGCCTCCTCAACACGATGCCCATGCTGGCCACGCTGACCGTAGA
GAAGGGGCTCCTCGTGGCGCTCGGAGAGGTCCTCCAGGTCTTCCTCAGCG
GCGGCCCGATGTACTTCATGTTCCACATCCAGACGCGCGCGCACTACTTC
TACCAGACGCTGCTGGCGGGCGGGGCCCAGTACCGCGCCACGGGCAGGGG
CTTCGTGACTCACCACTCCTGCTTCGACGACCTGTACCGCTTCTTCGCGA
ACTCGCACTTCTACCTCGGCTTCGAG
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