mRNA_L-elsbetiae_contig1531.3763.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1531.3763.1
Unique NamemRNA_L-elsbetiae_contig1531.3763.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1531.3763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1531contigL-elsbetiae_contig1531:12412..13478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1069
Cds size1059
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.6382694-UTR-L-elsbetiae_contig1531:12411..124191622815623.6382694-UTR-L-elsbetiae_contig1531:12411..12419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1531 12412..12419 +
1691682997.822416-UTR-L-elsbetiae_contig1531:12411..124191691682997.822416-UTR-L-elsbetiae_contig1531:12411..12419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1531 12412..12419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.6492248-CDS-L-elsbetiae_contig1531:12419..134781622815623.6492248-CDS-L-elsbetiae_contig1531:12419..13478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 12420..13478 +
1691682997.8330567-CDS-L-elsbetiae_contig1531:12419..134781691682997.8330567-CDS-L-elsbetiae_contig1531:12419..13478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 12420..13478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1531.3763.1prot_L-elsbetiae_contig1531.3763.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1531 12420..13478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1531.3763.1

>prot_L-elsbetiae_contig1531.3763.1 ID=prot_L-elsbetiae_contig1531.3763.1|Name=mRNA_L-elsbetiae_contig1531.3763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=353bp
MVKVFETLNFNAADLIIRGMHQIKQGTEHNDRQIDRQAASFARAGNVDGF
SLSFDVWNARRKWHAKDNIKIQVVKSILQSYAPLVLEAPFMESTYVELLL
RVLITDHGMGLLASAALPDVNKGADIPGIEPDLLDIVSQTLTKKNMKKLD
KTKTGADLVGAFHTFEGLKEEARKAEGNGNELTFEWIAAIAVQLAILRLL
RFWSLRYKYRGHVADICAFIYILLTLNINLINPFAFVVHMWSKYLKYPAK
EDAIVEVGVLRESRRNKTVQVTETTTRANANNSPHNRAALTTKRNQHDVI
KAQIQAKLVRIDQRLRHLRHFHPVALDTAKAHFDADNAEYERQIQRRNGG
GVG
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mRNA from alignment at L-elsbetiae_contig1531:12412..13478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1531.3763.1 ID=mRNA_L-elsbetiae_contig1531.3763.1|Name=mRNA_L-elsbetiae_contig1531.3763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1067bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:12412..13478+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACGAAATGGTGAAAGTATTTGAAACATTAAATTTTAATGCTGCAGAT
CTGATAATTAGAGGCATGCATCAGATAAAACAAGGTACGGAGCATAACGA
CAGACAGATAGATCGACAAGCAGCGTCCTTTGCTAGAGCTGGTAATGTCG
ATGGGTTTAGTCTGTCGTTCGACGTCTGGAATGCGAGAAGAAAGTGGCAT
GCAAAAGATAACATCAAAATTCAGGTTGTTAAAAGCATTTTGCAGAGCTA
CGCACCGTTAGTACTCGAAGCCCCTTTCATGGAATCAACCTACGTGGAAT
TGTTGCTTCGGGTCTTAATAACAGACCACGGGATGGGCCTATTGGCATCG
GCAGCCTTGCCCGACGTCAACAAAGGAGCTGATATCCCGGGAATCGAGCC
TGATTTGTTGGACATCGTGAGTCAGACCTTGACGAAGAAAAATATGAAGA
AACTGGACAAAACCAAAACAGGGGCCGATCTTGTCGGGGCGTTCCACACC
TTTGAGGGACTAAAGGAAGAAGCCAGGAAAGCGGAGGGCAACGGCAACGA
GTTAACGTTCGAGTGGATAGCCGCTATAGCTGTACAATTGGCTATTCTTC
GGCTCCTGAGGTTCTGGTCGCTCAGGTACAAATACCGAGGTCATGTGGCT
GACATATGTGCGTTCATCTACATATTACTCACTCTGAATATTAATTTGAT
CAACCCCTTTGCTTTCGTCGTCCACATGTGGAGTAAGTATTTGAAGTACC
CAGCAAAGGAGGACGCCATAGTGGAGGTGGGAGTGTTGAGAGAGTCACGA
CGTAACAAAACCGTTCAGGTTACAGAGACTACAACTAGGGCGAATGCGAA
CAACTCCCCTCACAATCGTGCTGCGCTTACGACAAAGAGAAACCAACACG
ACGTCATCAAGGCACAAATACAAGCAAAGCTTGTTAGGATAGATCAACGC
CTGCGCCACCTCAGACATTTCCATCCCGTTGCGCTAGACACCGCGAAAGC
ACATTTTGACGCAGACAACGCCGAGTATGAACGACAAATACAGCGGAGAA
ACGGGGGGGGCGTCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1531:12412..13478+

>mRNA_L-elsbetiae_contig1531.3763.1 ID=mRNA_L-elsbetiae_contig1531.3763.1|Name=mRNA_L-elsbetiae_contig1531.3763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2118bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:12412..13478+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAAAGTATTTGAAACATTAAATTTTAATGCTGCAGATCTGATAAT
TAGAGGCATGCATCAGATAAAACAAGGTACGGAGCATAACGACAGACAGA
TAGATCGACAAGCAGCGTCCTTTGCTAGAGCTGGTAATGTCGATGGGTTT
AGTCTGTCGTTCGACGTCTGGAATGCGAGAAGAAAGTGGCATGCAAAAGA
TAACATCAAAATTCAGGTTGTTAAAAGCATTTTGCAGAGCTACGCACCGT
TAGTACTCGAAGCCCCTTTCATGGAATCAACCTACGTGGAATTGTTGCTT
CGGGTCTTAATAACAGACCACGGGATGGGCCTATTGGCATCGGCAGCCTT
GCCCGACGTCAACAAAGGAGCTGATATCCCGGGAATCGAGCCTGATTTGT
TGGACATCGTGAGTCAGACCTTGACGAAGAAAAATATGAAGAAACTGGAC
AAAACCAAAACAGGGGCCGATCTTGTCGGGGCGTTCCACACCTTTGAGGG
ACTAAAGGAAGAAGCCAGGAAAGCGGAGGGCAACGGCAACGAGTTAACGT
TCGAGTGGATAGCCGCTATAGCTGTACAATTGGCTATTCTTCGGCTCCTG
AGGTTCTGGTCGCTCAGGTACAAATACCGAGGTCATGTGGCTGACATATG
TGCGTTCATCTACATATTACTCACTCTGAATATTAATTTGATCAACCCCT
TTGCTTTCGTCGTCCACATGTGGAGTAAGTATTTGAAGTACCCAGCAAAG
GAGGACGCCATAGTGGAGGTGGGAGTGTTGAGAGAGTCACGACGTAACAA
AACCGTTCAGGTTACAGAGACTACAACTAGGGCGAATGCGAACAACTCCC
CTCACAATCGTGCTGCGCTTACGACAAAGAGAAACCAACACGACGTCATC
AAGGCACAAATACAAGCAAAGCTTGTTAGGATAGATCAACGCCTGCGCCA
CCTCAGACATTTCCATCCCGTTGCGCTAGACACCGCGAAAGCACATTTTG
ACGCAGACAACGCCGAGTATGAACGACAAATACAGCGGAGAAACGGGGGG
GGCGTCGGTATGGTGAAAGTATTTGAAACATTAAATTTTAATGCTGCAGA
TCTGATAATTAGAGGCATGCATCAGATAAAACAAGGTACGGAGCATAACG
ACAGACAGATAGATCGACAAGCAGCGTCCTTTGCTAGAGCTGGTAATGTC
GATGGGTTTAGTCTGTCGTTCGACGTCTGGAATGCGAGAAGAAAGTGGCA
TGCAAAAGATAACATCAAAATTCAGGTTGTTAAAAGCATTTTGCAGAGCT
ACGCACCGTTAGTACTCGAAGCCCCTTTCATGGAATCAACCTACGTGGAA
TTGTTGCTTCGGGTCTTAATAACAGACCACGGGATGGGCCTATTGGCATC
GGCAGCCTTGCCCGACGTCAACAAAGGAGCTGATATCCCGGGAATCGAGC
CTGATTTGTTGGACATCGTGAGTCAGACCTTGACGAAGAAAAATATGAAG
AAACTGGACAAAACCAAAACAGGGGCCGATCTTGTCGGGGCGTTCCACAC
CTTTGAGGGACTAAAGGAAGAAGCCAGGAAAGCGGAGGGCAACGGCAACG
AGTTAACGTTCGAGTGGATAGCCGCTATAGCTGTACAATTGGCTATTCTT
CGGCTCCTGAGGTTCTGGTCGCTCAGGTACAAATACCGAGGTCATGTGGC
TGACATATGTGCGTTCATCTACATATTACTCACTCTGAATATTAATTTGA
TCAACCCCTTTGCTTTCGTCGTCCACATGTGGAGTAAGTATTTGAAGTAC
CCAGCAAAGGAGGACGCCATAGTGGAGGTGGGAGTGTTGAGAGAGTCACG
ACGTAACAAAACCGTTCAGGTTACAGAGACTACAACTAGGGCGAATGCGA
ACAACTCCCCTCACAATCGTGCTGCGCTTACGACAAAGAGAAACCAACAC
GACGTCATCAAGGCACAAATACAAGCAAAGCTTGTTAGGATAGATCAACG
CCTGCGCCACCTCAGACATTTCCATCCCGTTGCGCTAGACACCGCGAAAG
CACATTTTGACGCAGACAACGCCGAGTATGAACGACAAATACAGCGGAGA
AACGGGGGGGGCGTCGGT
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