mRNA_L-elsbetiae_contig15298.3756.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15298.3756.1
Unique NamemRNA_L-elsbetiae_contig15298.3756.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: D7G5Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y2_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.940e-52
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 2
Query:    2 AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRGA 265
            AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVD +RPQDRG+
Sbjct:  332 AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDESRPQDRGS 419          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A6H5KJZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.100e-51
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 2
Query:    2 AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRGA 265
            AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVD +RPQDRG+
Sbjct:  472 AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDQSRPQDRGS 559          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A7S3UTI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTI6_HETAK)

HSP 1 Score: 157 bits (396), Expect = 1.530e-44
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 2
Query:    8 VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANR 247
            VYTFGFVLMTPQLYINY+LKSVAHLPWRFLCYR +NT IDDLFAF+I+MPTMHR+SCFRDDVVF++Y+YQRWIYPVD+ R
Sbjct:  106 VYTFGFVLMTPQLYINYRLKSVAHLPWRFLCYRFVNTFIDDLFAFIIKMPTMHRVSCFRDDVVFLIYIYQRWIYPVDSKR 185          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A7S1GE21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE21_9STRA)

HSP 1 Score: 149 bits (377), Expect = 7.530e-43
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 2
Query:    8 VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRG 262
            VY FGF LMTPQL+INYK+KSVAHLP R + YRS+NT IDDLFAF+IRMP MHR+SCFRDD+VFV+Y+YQRWIYPVD+NRP + G
Sbjct:    8 VYAFGFALMTPQLFINYKMKSVAHLPLRVMLYRSINTFIDDLFAFIIRMPIMHRISCFRDDLVFVIYMYQRWIYPVDSNRPSEGG 92          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A7S4FEL9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FEL9_9EUGL)

HSP 1 Score: 148 bits (374), Expect = 8.830e-42
Identity = 63/85 (74.12%), Postives = 76/85 (89.41%), Query Frame = 2
Query:    8 VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRG 262
            +YTFGF++MTPQL+INYKLKSVAHLPWR   Y++LNT IDDLFAF+I+MPT+HRLSCFRDD++F+VYLYQRWIYPVD  R  + G
Sbjct:   40 IYTFGFIMMTPQLFINYKLKSVAHLPWRTFVYKALNTFIDDLFAFIIKMPTLHRLSCFRDDLIFLVYLYQRWIYPVDTTRVNEFG 124          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A662YE96_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YE96_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.980e-41
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 2
Query:    8 VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQD 256
            VY  GFV M PQL INY+LKSVAHL WR L YR+LNT IDDLFAFVI+MPT+HR+SCFRDDVVFVVYLYQRWIYPVDA RP D
Sbjct:   37 VYALGFVFMLPQLVINYRLKSVAHLQWRLLVYRALNTFIDDLFAFVIQMPTLHRISCFRDDVVFVVYLYQRWIYPVDAQRPSD 119          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A7S0W2U2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W2U2_9CRYP)

HSP 1 Score: 145 bits (366), Expect = 4.030e-41
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 2
Query:    8 VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRG 262
            VYTFGF++MTPQL+INYKLKSVAHLPWR + Y+ LNT+IDDLFAFVI+MPT+HRLSCFRDDV+F++Y+YQRW Y VD  R  + G
Sbjct:   16 VYTFGFIMMTPQLFINYKLKSVAHLPWRAMVYKFLNTIIDDLFAFVIKMPTLHRLSCFRDDVIFLIYIYQRWAYSVDRTRVNEYG 100          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: X6M4L5_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M4L5_RETFI)

HSP 1 Score: 145 bits (365), Expect = 8.500e-41
Identity = 60/87 (68.97%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    2 AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRG 262
            +F+Y FGF+++ PQLY+NYKLKSVAHLPWR L Y+ LNT+IDDLFAF+I MP MHRLSCFRDDV+F++YLYQ+WIYP+D +R  + G
Sbjct:   15 SFIYMFGFIMLCPQLYLNYKLKSVAHLPWRMLTYKFLNTIIDDLFAFLITMPWMHRLSCFRDDVIFLIYLYQKWIYPIDYSRTNEYG 101          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A662Y206_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y206_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.160e-40
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    2 AFVYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRG 262
            +FVY FGF++MTPQLYINYKLKSVAHLPWR + Y+SLNT IDDLFAFVI+MP MHRLSCFRDD++F +Y+YQRW YPVDA R  + G
Sbjct:  159 SFVYAFGFIMMTPQLYINYKLKSVAHLPWRAMVYKSLNTFIDDLFAFVIKMPWMHRLSCFRDDLIFFIYIYQRWKYPVDAKRTNEFG 245          
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Match: A0A1E7FBT5_9STRA (Cleft lip and palate transmembrane 1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBT5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 6.750e-40
Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 2
Query:    8 VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDANRPQDRG 262
            VY FGFVLMTPQL++NYK+KSVAHLPWR L Y+SLNT IDDLF+F+IRMPTM R+SCFRDD+VF +YLYQRW+YPVD +RP + G
Sbjct:  231 VYAFGFVLMTPQLFLNYKMKSVAHLPWRVLVYKSLNTFIDDLFSFIIRMPTMARISCFRDDIVFFIYLYQRWLYPVDTSRPVEGG 315          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15298.3756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y2_ECTSI1.940e-5296.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJZ5_9PHAE3.100e-5196.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UTI6_HETAK1.530e-4485.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1GE21_9STRA7.530e-4376.47Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4FEL9_9EUGL8.830e-4274.12Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A662YE96_9STRA1.980e-4180.72Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S0W2U2_9CRYP4.030e-4172.94Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
X6M4L5_RETFI8.500e-4168.97Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A662Y206_9STRA4.160e-4074.71Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1E7FBT5_9STRA6.750e-4075.29Cleft lip and palate transmembrane 1 (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15298contigL-elsbetiae_contig15298:1787..3201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue5.4e-39
Seed eggNOG ortholog2880.D7G5Y2
Preferred nameCLPTM1L
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425
EggNOG free text desc.apoptotic process
EggNOG OGsKOG2489@1,KOG2489@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size708
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15298.3756.1prot_L-elsbetiae_contig15298.3756.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15298 2227..3170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.9808438-UTR-L-elsbetiae_contig15298:1786..22261622815622.9808438-UTR-L-elsbetiae_contig15298:1786..2226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15298 1787..2226 -
1691682997.423846-UTR-L-elsbetiae_contig15298:1786..22261691682997.423846-UTR-L-elsbetiae_contig15298:1786..2226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15298 1787..2226 -
1622815623.024678-UTR-L-elsbetiae_contig15298:3170..32011622815623.024678-UTR-L-elsbetiae_contig15298:3170..3201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15298 3171..3201 -
1691682997.45497-UTR-L-elsbetiae_contig15298:3170..32011691682997.45497-UTR-L-elsbetiae_contig15298:3170..3201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15298 3171..3201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.9969373-CDS-L-elsbetiae_contig15298:2226..23221622815622.9969373-CDS-L-elsbetiae_contig15298:2226..2322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15298 2227..2322 -
1691682997.43409-CDS-L-elsbetiae_contig15298:2226..23221691682997.43409-CDS-L-elsbetiae_contig15298:2226..2322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15298 2227..2322 -
1622815623.010453-CDS-L-elsbetiae_contig15298:3029..31701622815623.010453-CDS-L-elsbetiae_contig15298:3029..3170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15298 3030..3170 -
1691682997.4449723-CDS-L-elsbetiae_contig15298:3029..31701691682997.4449723-CDS-L-elsbetiae_contig15298:3029..3170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15298 3030..3170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15298.3756.1

>prot_L-elsbetiae_contig15298.3756.1 ID=prot_L-elsbetiae_contig15298.3756.1|Name=mRNA_L-elsbetiae_contig15298.3756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCF
RDDVVFVVYLYQRWIYPVDANRPQDRGA*
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mRNA from alignment at L-elsbetiae_contig15298:1787..3201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15298.3756.1 ID=mRNA_L-elsbetiae_contig15298.3756.1|Name=mRNA_L-elsbetiae_contig15298.3756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1415bp|location=Sequence derived from alignment at L-elsbetiae_contig15298:1787..3201- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTTCGTGTACACGTTTGGCTTCGTCTTGATGACGCCGCAGCTCTACA TCAACTACAAGCTAAAGAGCGTGGCGCATCTGCCGTGGCGGTTCCTGTGC TACCGCAGCCTCAACACAGTGATCGACGACCTCTTTGCGTTCGTGATTCG CATGCCAACTATGCACCGCCTGGTGAGATGGGTGAAGGGGACGGTGGAAT GGAGAAGAGACGAGAAAGCATGGACCAAGCCGGAGATATATAGTATACGT GGGCAAACAAACATTCAAAGGGAAATTCGAGCAAATAGAGTAGCTTCCTG TCTTTTTTGCAAGGCATACCTATCGATTATGTATGAAGCTATTTTCGTTA GTTGCTGCGACTGCGTGACTTTCTTCTATCATTGGCGTGTACCCCCCCCC ACGTTTCGCTTGAAACCCAAATTTGCGTGACACGTCCGCACATCTTTAGG AGCATCCAGAGCAGCACCTCTATGTACTTCCAACACCAGCCAGGCAAAAC CTTGGAAGACATATCAACCACGGTGTTGTTTCACGCTCGATATTTTTTTG CATGTGTGGGTCGCGTTGCAGTGTCGCGTGGCATGCGCTTACTGTGCAAT GACTTCGCCCGGCCGCTTTGGAAGTTTGTGTTTGAATCGATCACGGCTTA GATGCTCTCAGTCCGTAAGTTAAGTAAGTCGTTACCGTACATACCATCCT AATATACATGTCTCGTTGTTTACACGCCCCCCCCCCCCCGCCGCCCCGCC CTCCTCCGCGCCTGTCGGTATCTGCTCGTGTTTGTGATAAATACGGACGG CGGTTGCTTCTACTACGTCGCCGCTGCTTCCGCGCGCGGACCTTCGACGG CCGCTACTGCTGCTGTGTCTCTTGTGCAGTCATGCTTCCGCGACGATGTG GTCTTCGTAGTTTATCTGTACCAGCGGTGGATATACCCAGTCGATGCCAA TCGCCCGCAGGACAGGGGTGCTTAGAGCAGGCTAGGCTAGGCTAGGCTAG GCTAGGCTAGGCTATTGGTGCGAAAGGCTCGTCAGTCTTGTTGAGAGTTC TGTCGTCCGTCGCAGGTGGGATCAGCCCACAGCTGCTACATAGGCACTTT TCGGAACGAGGTGGTAAAGAGGTCGTTCGTTGTGTCCCGAATGCATTTGT TTGTGAGAGGAGACGGCGCCTACCTTGTGATTGTCCTTCTTGATACGCGC AGGCAAGAGAGAGGGCGTCACTTCTCAACGTACATTCGCCTGCGAGAAAG TCAAGGTTTATTGTCCCACATGCGTTCCCGCCCTTAGCATGCGGTCGCTG CATTGTCTTCGCTTTTGGGCCGGCCTCAATGTTTCTTCGACGTGCTACAC CAGAGTGAGCCCGGACTACAAGCTCCTTGCTCGAGCGCCTTGCGATGACA AAGGCAACGGATGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15298:1787..3201-

>mRNA_L-elsbetiae_contig15298.3756.1 ID=mRNA_L-elsbetiae_contig15298.3756.1|Name=mRNA_L-elsbetiae_contig15298.3756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig15298:1787..3201- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCCGCAGCTCTACATCAACTACAAGCTAAAGAGCGTGGCGCATCT
GCCGTGGCGGTTCCTGTGCTACCGCAGCCTCAACACAGTGATCGACGACC
TCTTTGCGTTCGTGATTCGCATGCCAACTATGCACCGCCTGATGACGCCG
CAGCTCTACATCAACTACAAGCTAAAGAGCGTGGCGCATCTGCCGTGGCG
GTTCCTGTGCTACCGCAGCCTCAACACAGTGATCGACGACCTCTTTGCGT
TCGTGATTCGCATGCCAACTATGCACCGCCTGTCATGCTTCCGCGACGAT
GTGGTCTTCGTAGTTTATCTGTACCAGCGGTGGATATACCCAGTCGATGC
CAATCGCCCGCAGGACAGGGGTGCTTAGTCATGCTTCCGCGACGATGTGG
TCTTCGTAGTTTATCTGTACCAGCGGTGGATATACCCAGTCGATGCCAAT
CGCCCGCAGGACAGGGGTGCTTAG
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