mRNA_L-elsbetiae_contig15285.3750.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15285.3750.1
Unique NamemRNA_L-elsbetiae_contig15285.3750.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15285.3750.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 9.410e-53
Identity = 102/208 (49.04%), Postives = 135/208 (64.90%), Query Frame = -2 
Query:    2 GFLVATVNRLVLANEMGIDFRAKRGREPALEHVWELTNEPVEVGVAAVEDLCTVLQTGVSFDPEP--PANTFIGEGFVERSNRTRKYRRVLTSWRASGLQGWFYDRRSRLSNVNADSLPVFSAGLAVSSDGFNFLSMTGKKYSVNASFVGLGCLSPALLRRLRSWTLASLAAPGAARELDIAPLMKIIAKLQAGARADIATGDKQTMS 619
            G LV  +NRL+   E+G  F  KR RE   E +WELTN+P+E+ V A+   C+VL  G + +P        + GEGFVE+  RT + R  +  W   G  G F+D+R+   + N   LPV SAG+A SSD FN+ S++G+KYSVNA+FVG GC+SP LLRR R W LA+L  PGAA ELDI PLMKII +LQ G +A+I+ G K T++
Sbjct:  397 GHLVVRINRLLSRREVGHSFATKRRREEKYEQLWELTNDPLEIRVGAMSGRCSVLVPGDTSEPSDGDAVPAYDGEGFVEQIPRTNELRLAMAPWTKQGYHGRFFDQRASGVHKNLAGLPVISAGIACSSDDFNYFSLSGRKYSVNATFVGCGCMSPTLLRRPRPWYLATLGLPGAAWELDILPLMKIIRRLQNGCKAEISVGTKLTVT 604
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BLAST of mRNA_L-elsbetiae_contig15285.3750.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 5.610e-40
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = -2 
Query:    2 LTSWRASGLQGWFYDRRSRLSNVNADSLPVFSAGLAVSSDGFNFLSMTGKKYSVNASFVGLGCLSPALLRRLRSWTLASLAAPGAARELDIAPLMKIIAKLQAGARADIATGDKQTMS 355
            +T WR  G  GWF+DRR+   + N   LPVFS GLA SSD FN+ S++GK+YSVNA+FVGLGCLSPALLRRLRSW LA+L  PGAA ELD+ PLMKII  LQ G +A+IA GDKQT++
Sbjct:    1 MTPWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTIT 118
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BLAST of mRNA_L-elsbetiae_contig15285.3750.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.870e-24
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = -2 
Query:    2 SSDGFNFLSMTGKKYSVNASFVGLGCLSPALLRRLRSWTLASLAAPGAARELDIAPLMKIIAKLQAGARADIATGDKQTMS 244
            SSD FN+ S++G+K+SV+A+FVGLGCLSP LLRRLRSW LA+L  PGAA ELDI PLM+II  LQ G + +I+ GDKQT++
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15285.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LGI1_9PHAE9.410e-5349.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI4_ECTSI5.610e-4065.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE4.870e-2465.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15285contigL-elsbetiae_contig15285:2815..3761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size948
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.4772604-UTR-L-elsbetiae_contig15285:2814..32211622815622.4772604-UTR-L-elsbetiae_contig15285:2814..3221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15285 2815..3221 +
1691682997.1757417-UTR-L-elsbetiae_contig15285:2814..32211691682997.1757417-UTR-L-elsbetiae_contig15285:2814..3221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15285 2815..3221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.4899597-CDS-L-elsbetiae_contig15285:3221..37611622815622.4899597-CDS-L-elsbetiae_contig15285:3221..3761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15285 3222..3761 +
1691682997.1853867-CDS-L-elsbetiae_contig15285:3221..37611691682997.1853867-CDS-L-elsbetiae_contig15285:3221..3761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15285 3222..3761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15285.3750.1prot_L-elsbetiae_contig15285.3750.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15285 3222..3761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15285.3750.1

>prot_L-elsbetiae_contig15285.3750.1 ID=prot_L-elsbetiae_contig15285.3750.1|Name=mRNA_L-elsbetiae_contig15285.3750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MKVFAGGSGSKETPVCKTVHKSSTAATPTSTGSLVNSHTCSNAGSRPRFA
LKSIPISLARTNRLTVATKNPPPHSPSWESSSLLLLLRRRPPPPPPPPRP
PPPPSPLASVLEDACDAFRTLAAREAAMTSAYRAPFSVAFARRSLVRLTS
PAPSSSLPILPSSLFSWSSPLPLLPLPPPS
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mRNA from alignment at L-elsbetiae_contig15285:2815..3761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15285.3750.1 ID=mRNA_L-elsbetiae_contig15285.3750.1|Name=mRNA_L-elsbetiae_contig15285.3750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=947bp|location=Sequence derived from alignment at L-elsbetiae_contig15285:2815..3761+ (Laminarionema elsbetiae ELsaHSoW15)
CCGACATTGTCTGCTTATCCCCGGTAGCGATGTCTGCTCGGGCTCCGGCC
TGAAGCTTAGCAATGATCTTCATCAACGGGGCAATGTCGAGTTCCCTCGC
AGCTCCTGGCGCGGCTAGCGAAGCGAGCGTCCACGAGCGGAGACGGCGAA
GAAGCGCAGGAGAAAGGCATCCGAGTCCGACGAATGATGCATTGACACTG
TACTTTTTGCCCGTCATCGAAAGGAAGTTGAAGCCGTCGGAACTGACCGC
GAGCCCGGCAGAGAAAACAGGCAGACTGTCCGCGTTGACGTTACTCAGCC
TAGATCGTCGATCATAAAACCACCCCTGGAGTCCGGAGGCCCTCCACGAT
GTCAGCACACGCCGATATTTCCTTGTTCTATTTGATCTTTCCACAAACCC
TTCTCCGATGAAAGTGTTCGCGGGTGGCTCCGGGTCGAAAGAGACGCCAG
TCTGTAAAACGGTGCATAAATCCTCCACCGCCGCGACCCCTACTTCAACT
GGCTCATTAGTCAATTCCCACACATGCTCCAACGCCGGTTCTCGTCCGCG
TTTTGCCCTGAAATCAATTCCCATTTCGTTGGCGAGAACCAACCGATTAA
CAGTCGCCACCAAAAACCCTCCACCGCATTCTCCCAGCTGGGAATCGTCG
TCACTGCTGCTGCTGCTACGGAGGCGGCCACCGCCGCCGCCGCCACCGCC
ACGACCGCCGCCGCCACCATCGCCACTTGCCTCAGTTCTGGAGGATGCCT
GCGACGCTTTCCGGACCTTGGCAGCTCGAGAGGCGGCCATGACTTCAGCG
TATCGCGCCCCCTTTTCGGTAGCCTTCGCCCGTCGCTCGCTTGTTCGCCT
TACATCACCCGCACCGTCGTCATCACTGCCGATTTTACCGTCATCGTTGT
TCTCCTGGTCATCACCCCTGCCGCTTCTCCCGCTTCCACCACCGTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15285:2815..3761+

>mRNA_L-elsbetiae_contig15285.3750.1 ID=mRNA_L-elsbetiae_contig15285.3750.1|Name=mRNA_L-elsbetiae_contig15285.3750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig15285:2815..3761+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGTGTTCGCGGGTGGCTCCGGGTCGAAAGAGACGCCAGTCTGTAA
AACGGTGCATAAATCCTCCACCGCCGCGACCCCTACTTCAACTGGCTCAT
TAGTCAATTCCCACACATGCTCCAACGCCGGTTCTCGTCCGCGTTTTGCC
CTGAAATCAATTCCCATTTCGTTGGCGAGAACCAACCGATTAACAGTCGC
CACCAAAAACCCTCCACCGCATTCTCCCAGCTGGGAATCGTCGTCACTGC
TGCTGCTGCTACGGAGGCGGCCACCGCCGCCGCCGCCACCGCCACGACCG
CCGCCGCCACCATCGCCACTTGCCTCAGTTCTGGAGGATGCCTGCGACGC
TTTCCGGACCTTGGCAGCTCGAGAGGCGGCCATGACTTCAGCGTATCGCG
CCCCCTTTTCGGTAGCCTTCGCCCGTCGCTCGCTTGTTCGCCTTACATCA
CCCGCACCGTCGTCATCACTGCCGATTTTACCGTCATCGTTGTTCTCCTG
GTCATCACCCCTGCCGCTTCTCCCGCTTCCACCACCGTCAATGAAAGTGT
TCGCGGGTGGCTCCGGGTCGAAAGAGACGCCAGTCTGTAAAACGGTGCAT
AAATCCTCCACCGCCGCGACCCCTACTTCAACTGGCTCATTAGTCAATTC
CCACACATGCTCCAACGCCGGTTCTCGTCCGCGTTTTGCCCTGAAATCAA
TTCCCATTTCGTTGGCGAGAACCAACCGATTAACAGTCGCCACCAAAAAC
CCTCCACCGCATTCTCCCAGCTGGGAATCGTCGTCACTGCTGCTGCTGCT
ACGGAGGCGGCCACCGCCGCCGCCGCCACCGCCACGACCGCCGCCGCCAC
CATCGCCACTTGCCTCAGTTCTGGAGGATGCCTGCGACGCTTTCCGGACC
TTGGCAGCTCGAGAGGCGGCCATGACTTCAGCGTATCGCGCCCCCTTTTC
GGTAGCCTTCGCCCGTCGCTCGCTTGTTCGCCTTACATCACCCGCACCGT
CGTCATCACTGCCGATTTTACCGTCATCGTTGTTCTCCTGGTCATCACCC
CTGCCGCTTCTCCCGCTTCCACCACCGTCA
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