mRNA_L-elsbetiae_contig15285.3748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15285.3748.1
Unique NamemRNA_L-elsbetiae_contig15285.3748.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15285.3748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15285contigL-elsbetiae_contig15285:2..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size625
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15285.3748.1prot_L-elsbetiae_contig15285.3748.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15285 204..524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.4165342-UTR-L-elsbetiae_contig15285:1..2031622815622.4165342-UTR-L-elsbetiae_contig15285:1..203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15285 2..203 +
1691682997.1408148-UTR-L-elsbetiae_contig15285:1..2031691682997.1408148-UTR-L-elsbetiae_contig15285:1..203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15285 2..203 +
1622815622.4417634-UTR-L-elsbetiae_contig15285:524..6261622815622.4417634-UTR-L-elsbetiae_contig15285:524..626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15285 525..626 +
1691682997.1652954-UTR-L-elsbetiae_contig15285:524..6261691682997.1652954-UTR-L-elsbetiae_contig15285:524..626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15285 525..626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.4291446-CDS-L-elsbetiae_contig15285:203..5241622815622.4291446-CDS-L-elsbetiae_contig15285:203..524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15285 204..524 +
1691682997.15484-CDS-L-elsbetiae_contig15285:203..5241691682997.15484-CDS-L-elsbetiae_contig15285:203..524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15285 204..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15285.3748.1

>prot_L-elsbetiae_contig15285.3748.1 ID=prot_L-elsbetiae_contig15285.3748.1|Name=mRNA_L-elsbetiae_contig15285.3748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MRSKQAPAGEALPLYFQGVWRKTFQQSARLPATFPLMVLMERRYCACYRV
YESSDAQTPTFGVHIVTREMRVFGAIPSTSHTLPASNGRCSVYRADKTAF
NYDLAI*
back to top

mRNA from alignment at L-elsbetiae_contig15285:2..626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15285.3748.1 ID=mRNA_L-elsbetiae_contig15285.3748.1|Name=mRNA_L-elsbetiae_contig15285.3748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=625bp|location=Sequence derived from alignment at L-elsbetiae_contig15285:2..626+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGTAGAGGTGTACACGCCCCCGGGTAATAGAGTACAGACGCAAAGGAA
GGCGCGCCTGTCAGACGACGTCTTCACCAACGAATAATGTTCCGCTTGCA
ACTCAGCCCCAGGCGAGACAGACGGTGTGCGGTGTATCGTGCGAGCCTTC
ACGGGTGAAGGTTGAAGTCTGGTGGGGAGGAAAATATTCCACACAGTAGT
CGATGCGCAGCAAACAAGCACCTGCAGGGGAAGCGCTGCCGCTATACTTC
CAAGGGGTCTGGCGCAAAACGTTTCAGCAGTCAGCTCGTCTTCCTGCTAC
TTTTCCGCTTATGGTACTGATGGAAAGAAGGTATTGTGCGTGTTATCGTG
TGTATGAGAGCAGTGATGCGCAAACGCCTACGTTTGGAGTACACATCGTT
ACGCGGGAAATGCGGGTGTTTGGCGCCATACCTTCGACTTCCCACACATT
GCCTGCTTCCAACGGCAGGTGCTCTGTCTATCGTGCCGATAAAACGGCCT
TTAATTACGATCTCGCGATATAAGAATAAGAACTCGACTCACCGTTCACC
ACTACGTTCTCACTGATGTGCAGGCCTTCGTGAAACGTTCCCAACTGTAC
ACCCATGACCAGCGATGCCTGTTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15285:2..626+

>mRNA_L-elsbetiae_contig15285.3748.1 ID=mRNA_L-elsbetiae_contig15285.3748.1|Name=mRNA_L-elsbetiae_contig15285.3748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig15285:2..626+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCAGCAAACAAGCACCTGCAGGGGAAGCGCTGCCGCTATACTTCCA
AGGGGTCTGGCGCAAAACGTTTCAGCAGTCAGCTCGTCTTCCTGCTACTT
TTCCGCTTATGGTACTGATGGAAAGAAGGTATTGTGCGTGTTATCGTGTG
TATGAGAGCAGTGATGCGCAAACGCCTACGTTTGGAGTACACATCGTTAC
GCGGGAAATGCGGGTGTTTGGCGCCATACCTTCGACTTCCCACACATTGC
CTGCTTCCAACGGCAGGTGCTCTGTCTATCGTGCCGATAAAACGGCCTTT
AATTACGATCTCGCGATATAAATGCGCAGCAAACAAGCACCTGCAGGGGA
AGCGCTGCCGCTATACTTCCAAGGGGTCTGGCGCAAAACGTTTCAGCAGT
CAGCTCGTCTTCCTGCTACTTTTCCGCTTATGGTACTGATGGAAAGAAGG
TATTGTGCGTGTTATCGTGTGTATGAGAGCAGTGATGCGCAAACGCCTAC
GTTTGGAGTACACATCGTTACGCGGGAAATGCGGGTGTTTGGCGCCATAC
CTTCGACTTCCCACACATTGCCTGCTTCCAACGGCAGGTGCTCTGTCTAT
CGTGCCGATAAAACGGCCTTTAATTACGATCTCGCGATATAA
back to top