mRNA_L-elsbetiae_contig15283.3747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15283.3747.1
Unique NamemRNA_L-elsbetiae_contig15283.3747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: UPI00146A6B1F (hypothetical protein n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146A6B1F)

HSP 1 Score: 175 bits (444), Expect = 3.130e-48
Identity = 117/263 (44.49%), Postives = 159/263 (60.46%), Query Frame = 1
Query:    1 FNDASDVENFASTFTLDAPVEDSDQDLGDATITVTAQDKTDPTVKSEASETAPVVVDAVLDEAGSAKQEETVTEDESDQPQEIGLGLTLDFVDAGFDGSLDGESDTDGSEEITDVTVT-----IDAGT-LELGANAPAGAELRENPDGSFTLEVEDPADYGAAIAALQVEVEAGFDGEVNGTISVTTQETVPNSDGETDTSDNSHTTENGFTVTVDPVAGDPSTEFTTVDADGNL--VLKEDATDTEVGFKAEVGDATDELTS 765
            FND++D+E+F+S+FTLDAPVEDSD DL  ATIT  A+DKTD T   +  ET  +VVDAVLD     +     +  ESD  Q + LGL + F  +GF  +     DTDGSE  T +TVT     + AG  L LGA AP+ A L E PDG++TL V DPAD   A+  ++  V AG++G +NG+IS  ++ET+PN+D E   +DN       F++T++     P+  F     DG    ++KED+ D  + F A  GD+TDELTS
Sbjct:  208 FNDSADLESFSSSFTLDAPVEDSDADLS-ATITAYAKDKTDATETGDGGETKTIVVDAVLDRFADVEGGAAASGTESDTVQNLNLGLGMQFAASGFTPTDSTPDDTDGSETFT-ITVTLHGTAVTAGVGLVLGAGAPSDATLTEGPDGTWTLNVSDPADLEVAVGLIEAVVPAGYEGTINGSISSVSEETLPNNDEEDTLADNRKEDSADFSLTIEGGEVVPTAAF----GDGEFAGIIKEDSVDNTINFSAASGDSTDELTS 464          
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: UPI0018733476 (FecR domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018733476)

HSP 1 Score: 173 bits (439), Expect = 1.210e-45
Identity = 124/262 (47.33%), Postives = 153/262 (58.40%), Query Frame = 1
Query:    1 FNDASDVENFASTFTLDAPVEDSDQDLGDATITVTAQDKTDPTVKSEASETAPVVVDAVLDEAGSAKQEETVTEDESDQPQEIGLGLTLDFVDAGFDGSLDGESDTDGSEEITDVTVTIDAGTLELGANAPAGAELRENPDGSFTLEVEDPADYGAAIAALQVEVEAGFDGEVNGTISVTTQETVPNSDGETDTSDNSHTTENGFTVTVDPVAGDPSTEF------TTVDADGNLV-LKEDATDTEVGFKAEVGDATDELTS 765
            F+   D++ FAS+FTLDAP + SD DL    IT TAQD  DPT    AS +  +V+DAVLDEA    Q  + T  E+   Q+I L L+L  +  GFD S     D DGSE IT+VTV + AG+L LGA APAG+ +  N  GSFTL V +PADY  A+AALQVEV AG DGEV GTI VTT E  P S  E  ++DNS T +  F+V V      PS  F        + A   +  + ED+ D  +GF    GD TDEL S
Sbjct:  501 FDITQDIQVFASSFTLDAPEDGSDVDLPGIKITATAQDLLDPTKMGSASASGTLVLDAVLDEAALPSQGASATVSEAAAAQDIPLDLSLSIIPTGFDSS---GPDGDGSEAITNVTVVLSAGSLVLGAGAPAGSSIISNGGGSFTLLVANPADYADAVAALQVEVPAGLDGEVTGTIYVTTAEFSP-SGAEAQSADNSLTLDADFSVMVTAGEVAPSASFGFPEGVVLLGAPAAITTILEDSEDNVIGFSVAAGDPTDELVS 758          
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: UPI00146D5A6D (hypothetical protein n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146D5A6D)

HSP 1 Score: 164 bits (415), Expect = 1.470e-43
Identity = 115/268 (42.91%), Postives = 157/268 (58.58%), Query Frame = 1
Query:    1 FNDASDVENFASTFTLDAPVEDSDQDLGDATITVTAQDKTDPTVKSEASETAPVVVDAVLDEAGSAKQEETVTEDESDQPQEIGLGLTLDFVDAGFDGSLDGESDT-----DGSEEITDVTVTID-----AGT-LELGANAPAGAELRENPDGSFTLEVEDPADYGAAIAALQVEVEAGFDGEVNGTISVTTQETVPNSDGETDTSDNSHTTENGFTVTVDPVAGDPSTEFTTVDADGNL--VLKEDATDTEVGFKAEVGDATDELTS 765
            FND++D+E+F+S+FTLDAPVEDSD DL  ATIT  A+DKTD T   +  ET  +VVDAVLD       +E     ES   Q + LGL+++F   G+    D  +DT     DGSE  T +TVT+D     AG  L LG +AP+ A L E P G++TL    PAD  AA+  ++  + AG++G +NGTIS  +++T P    ETD SDN       F++T++     P+  F     DG    ++KED+ D  + F A  GD+TDELTS
Sbjct:  254 FNDSADLESFSSSFTLDAPVEDSDADLS-ATITAYAKDKTDATATGDGGETKTIVVDAVLDRYAEVSADELAPGTESAADQNVNLGLSMEFEVTGYGAPSDQPADTTSDDTDGSETFT-ITVTLDGTAVTAGVGLVLGDDAPSDATLTEGPGGTWTLTANTPADLAAAVNDIEAVIPAGYEGTINGTISSVSEDTAPGG-VETDLSDNKEEDSADFSLTIEGGEVVPTAAF----GDGEFAGIIKEDSVDNTINFSAASGDSTDELTS 514          
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: UPI00146D57BF (type I secretion C-terminal target domain-containing protein n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146D57BF)

HSP 1 Score: 98.6 bits (244), Expect = 1.120e-19
Identity = 86/220 (39.09%), Postives = 127/220 (57.73%), Query Frame = 1
Query:    1 FNDASDVENFASTFTLDAPVEDSDQDLGDATITVTAQDKTDPTVKSEASETAPVVVDAVLDEAGSAKQEETVTEDESDQ-PQEIG-LGLTLD---FVDAGFDGSLDGESDTDGSEEITDVTVTIDAGTLELGANAPAGAELRENPDGSFTLEVEDPADYGAAIAALQVEVEAGFDGEVNGTISVTTQE------TVPNSDGETDTSDNSHTTENGFTVTV 627
            FN+++D+E+F+S+FTLDAPVEDSD DL  ATIT  A+DKTD T      ET  +VVDAVLD A +   +  ++  +++  P +IG L   L+   F ++  +G+  G +D DGSE +T + V ++ G   LG   PAG  +      +FT   ED A + + + +  V    GF+G+V  +I  TT+E      TV  S  E D +DN+ + EN  TVT+
Sbjct:   64 FNNSADLESFSSSFTLDAPVEDSDADLS-ATITAYAKDKTDATETGNGGETKTIVVDAVLDYAVNVGGDAAISVVQANNDPIDIGDLSAVLNPAGFANSTTNGTDFGGADGDGSELVT-MVVEVNQGA-SLGWTLPAGISVSGTGPWTFTGTTEDIAGWNSLVDSFNVTTTPGFNGDVTVSIKTTTEEANTPDGTVVGSGVEDDIADNT-SEENVHTVTI 279          
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: UPI001872F083 (type I secretion C-terminal target domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872F083)

HSP 1 Score: 76.6 bits (187), Expect = 3.670e-12
Identity = 86/257 (33.46%), Postives = 118/257 (45.91%), Query Frame = 1
Query:   37 TFTLDAPVEDSDQDL-----GDATITVTAQDKTDPTVKSEASETAPVVVDAVLDEAGSAKQEETVTEDESDQPQEIGLGLTLDFVDAGFDGSLDGESDTDGSEEITDVTVTIDAGTLELGANAPAGAELRENPDGSFTLEV--EDPADYGAAIAALQVEVEAGFDGEVNGTISVTTQETV----PN--SDGETDTSDNSHTTENGFTVTVDPVAGDPSTEFTTVDADGN-LVLKEDAT-DTEVGFKAEVGDATDELT 762
            T TL  P  DSD D+      D +++ T  D       S    T  V VDAV+D  GS   +        D   ++ L + L        G   G +DTDGSE +T+V VT+  G L        GA + ENP G++T +   E  AD  + + +L V   AGFDG V+ T+  TT E      PN  S  E D  DN       F VTVDP    P+ +   VD +GN   +KED + + +V   ++  D  DE+T
Sbjct: 1894 TVTLTPPA-DSDADVFNELAADLSVSATVADPDSGDTASSGPVTIDVNVDAVVD--GSEVTQTAAASGNEDTEIDLNLAIALGGDSTTGPGESQGGTDTDGSESVTEVVVTLSTGELGWTLAGTIGAPV-ENPAGTWTFDTAGESLADVQSLVDSLTVTPPAGFDGTVDVTVVTTTAEAATEAGPNGGSGVECDDDDNVDVDTYTFEVTVDPTVTPPTVD---VDLEGNEACIKEDGSVEFDVTVTSQDDDVIDEVT 2143          
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: A0A812R6R9_SYMMI (FrpA protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812R6R9_SYMMI)

HSP 1 Score: 69.3 bits (168), Expect = 1.110e-9
Identity = 82/251 (32.67%), Postives = 108/251 (43.03%), Query Frame = 1
Query:   22 ENFASTFTLDAPVE---DSDQDLGDATITVTAQDKTDPTVKSEASETAPVVVDAVLDEAGSAKQEETVTEDESDQPQEIGLGLTLDFVD-----AGFDGSLD-----GESDTDGSEEITDVTVTIDAGTLELGANAPAGAELRE---NPDGSFTLEVEDPA--DYGAAIAALQVEVEAGFDGEVNGTISVTTQETV------PNSDGETDTSDNSHTTENGFTVTVDPVAGDPSTEFTTVDADGNLVLKED 702
            +N   T TL  P     D   +LGD  ++V+A  K    V + A    PV +D  +D      +         D+   I L L +D        AG D   D     G +DTDGSE IT V VT+  G  ELG   P   ++      P G++T +       +  A + +L V   AGFDGE+  T+  TT E        P SD E D SDN       FTVTV+P    P T   T+  +G   LKED
Sbjct: 1709 QNVVFTVTLTPPANSDVDVRSELGDD-LSVSATAKDGVLVSAPAG---PVTIDVDVDAVVDGSEVTQTGPASGDEDTTIALELAIDLGGDSTSLAGADPDTDQPATQGGTDTDGSESITQVVVTLSEG--ELGWTLPVSGDIAAPVVGPAGTWTFDTSGAPLEEVQALVKSLSVTPPAGFDGEIAVTVETTTAEAATEGGPNPGSDKECDESDNVDVDVYPFTVTVNPTTEPPET---TLGVEGGGCLKED 1950          
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Match: A0A0M2R567_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Kiloniella litopenaei TaxID=1549748 RepID=A0A0M2R567_9PROT)

HSP 1 Score: 62.4 bits (150), Expect = 1.410e-7
Identity = 52/151 (34.44%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  157 PVVVDAVLDEA----GSAKQEETVTEDESDQPQEIGLGLTLDFVDAGFDGS----------LDGESDTDGSEEITDVTVTIDAGTLELGANAPAGAELRENPDGS-FTLEVEDPADYGAAIAALQVEVEAGFDGEVNGTISVTTQETVPNS 564
            P+ VDAV+D +    GSA   +            I L LTL        G+          + G +DTDGSE +T + VT+D+GTL   AN+   A   + P G+ +T    D A   A +A  +V   +GFDG +NGTI+ TT +  P S
Sbjct:  246 PITVDAVVDGSEVTQGSASGSDNAA---------IDLDLTLSLGGDSTTGTSVPVDPDQADVQGGTDTDGSENVTKIVVTLDSGTL---ANSAGVAYAPDTPGGTTWTFSPADQAAAEALVAGFKVNPVSGFDGTINGTITTTTVDGTPGS 384          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15283.3747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00146A6B1F3.130e-4844.49hypothetical protein n=1 Tax=Sneathiella chinensis... [more]
UPI00187334761.210e-4547.33FecR domain-containing protein n=1 Tax=Pelagibius ... [more]
UPI00146D5A6D1.470e-4342.91hypothetical protein n=1 Tax=Sneathiella chinensis... [more]
UPI00146D57BF1.120e-1939.09type I secretion C-terminal target domain-containi... [more]
UPI001872F0833.670e-1233.46type I secretion C-terminal target domain-containi... [more]
A0A812R6R9_SYMMI1.110e-932.67FrpA protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A0M2R567_9PROT1.410e-734.44Uncharacterized protein (Fragment) n=1 Tax=Kilonie... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15283contigL-elsbetiae_contig15283:3467..4231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.3805146-CDS-L-elsbetiae_contig15283:3466..42311622815622.3805146-CDS-L-elsbetiae_contig15283:3466..4231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15283 3467..4231 +
1691682997.1290507-CDS-L-elsbetiae_contig15283:3466..42311691682997.1290507-CDS-L-elsbetiae_contig15283:3466..4231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15283 3467..4231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15283.3747.1prot_L-elsbetiae_contig15283.3747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15283 3467..4231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15283.3747.1

>prot_L-elsbetiae_contig15283.3747.1 ID=prot_L-elsbetiae_contig15283.3747.1|Name=mRNA_L-elsbetiae_contig15283.3747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
FNDASDVENFASTFTLDAPVEDSDQDLGDATITVTAQDKTDPTVKSEASE
TAPVVVDAVLDEAGSAKQEETVTEDESDQPQEIGLGLTLDFVDAGFDGSL
DGESDTDGSEEITDVTVTIDAGTLELGANAPAGAELRENPDGSFTLEVED
PADYGAAIAALQVEVEAGFDGEVNGTISVTTQETVPNSDGETDTSDNSHT
TENGFTVTVDPVAGDPSTEFTTVDADGNLVLKEDATDTEVGFKAEVGDAT
DELTS
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mRNA from alignment at L-elsbetiae_contig15283:3467..4231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15283.3747.1 ID=mRNA_L-elsbetiae_contig15283.3747.1|Name=mRNA_L-elsbetiae_contig15283.3747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=765bp|location=Sequence derived from alignment at L-elsbetiae_contig15283:3467..4231+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAACGACGCGTCGGACGTCGAGAACTTCGCCAGCACCTTCACGCTGGA CGCGCCGGTCGAGGACAGCGACCAGGATCTCGGGGACGCGACGATCACGG TCACCGCCCAGGACAAGACCGATCCGACTGTGAAGAGCGAGGCCAGCGAG ACGGCGCCGGTTGTGGTCGACGCGGTGCTGGACGAGGCAGGCTCGGCGAA GCAGGAAGAGACGGTGACGGAGGACGAGTCCGACCAACCGCAGGAGATCG GCCTGGGCCTCACGCTGGATTTCGTGGATGCCGGCTTTGACGGCTCGCTC GACGGCGAGTCGGATACGGACGGCTCGGAAGAGATCACCGATGTGACGGT GACGATCGACGCCGGAACGCTGGAGCTTGGGGCGAATGCGCCGGCGGGCG CTGAGTTGAGGGAGAACCCGGACGGCAGCTTCACGCTGGAGGTCGAGGAC CCGGCGGACTACGGTGCCGCCATTGCGGCGCTGCAGGTCGAGGTCGAGGC GGGCTTTGACGGTGAGGTGAACGGGACGATCTCGGTCACTACCCAGGAGA CCGTGCCGAACAGCGACGGCGAGACCGATACCTCGGACAACAGTCATACG ACCGAGAACGGCTTCACCGTGACGGTGGATCCGGTGGCGGGGGACCCGTC GACTGAATTCACCACGGTGGATGCGGATGGCAACCTGGTCCTCAAGGAGG ACGCGACGGACACCGAGGTCGGTTTCAAGGCCGAGGTGGGCGATGCGACG GACGAGCTGACGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15283:3467..4231+

>mRNA_L-elsbetiae_contig15283.3747.1 ID=mRNA_L-elsbetiae_contig15283.3747.1|Name=mRNA_L-elsbetiae_contig15283.3747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig15283:3467..4231+ (Laminarionema elsbetiae ELsaHSoW15)
TTCAACGACGCGTCGGACGTCGAGAACTTCGCCAGCACCTTCACGCTGGA
CGCGCCGGTCGAGGACAGCGACCAGGATCTCGGGGACGCGACGATCACGG
TCACCGCCCAGGACAAGACCGATCCGACTGTGAAGAGCGAGGCCAGCGAG
ACGGCGCCGGTTGTGGTCGACGCGGTGCTGGACGAGGCAGGCTCGGCGAA
GCAGGAAGAGACGGTGACGGAGGACGAGTCCGACCAACCGCAGGAGATCG
GCCTGGGCCTCACGCTGGATTTCGTGGATGCCGGCTTTGACGGCTCGCTC
GACGGCGAGTCGGATACGGACGGCTCGGAAGAGATCACCGATGTGACGGT
GACGATCGACGCCGGAACGCTGGAGCTTGGGGCGAATGCGCCGGCGGGCG
CTGAGTTGAGGGAGAACCCGGACGGCAGCTTCACGCTGGAGGTCGAGGAC
CCGGCGGACTACGGTGCCGCCATTGCGGCGCTGCAGGTCGAGGTCGAGGC
GGGCTTTGACGGTGAGGTGAACGGGACGATCTCGGTCACTACCCAGGAGA
CCGTGCCGAACAGCGACGGCGAGACCGATACCTCGGACAACAGTCATACG
ACCGAGAACGGCTTCACCGTGACGGTGGATCCGGTGGCGGGGGACCCGTC
GACTGAATTCACCACGGTGGATGCGGATGGCAACCTGGTCCTCAAGGAGG
ACGCGACGGACACCGAGGTCGGTTTCAAGGCCGAGGTGGGCGATGCGACG
GACGAGCTGACGTCGTTCAACGACGCGTCGGACGTCGAGAACTTCGCCAG
CACCTTCACGCTGGACGCGCCGGTCGAGGACAGCGACCAGGATCTCGGGG
ACGCGACGATCACGGTCACCGCCCAGGACAAGACCGATCCGACTGTGAAG
AGCGAGGCCAGCGAGACGGCGCCGGTTGTGGTCGACGCGGTGCTGGACGA
GGCAGGCTCGGCGAAGCAGGAAGAGACGGTGACGGAGGACGAGTCCGACC
AACCGCAGGAGATCGGCCTGGGCCTCACGCTGGATTTCGTGGATGCCGGC
TTTGACGGCTCGCTCGACGGCGAGTCGGATACGGACGGCTCGGAAGAGAT
CACCGATGTGACGGTGACGATCGACGCCGGAACGCTGGAGCTTGGGGCGA
ATGCGCCGGCGGGCGCTGAGTTGAGGGAGAACCCGGACGGCAGCTTCACG
CTGGAGGTCGAGGACCCGGCGGACTACGGTGCCGCCATTGCGGCGCTGCA
GGTCGAGGTCGAGGCGGGCTTTGACGGTGAGGTGAACGGGACGATCTCGG
TCACTACCCAGGAGACCGTGCCGAACAGCGACGGCGAGACCGATACCTCG
GACAACAGTCATACGACCGAGAACGGCTTCACCGTGACGGTGGATCCGGT
GGCGGGGGACCCGTCGACTGAATTCACCACGGTGGATGCGGATGGCAACC
TGGTCCTCAAGGAGGACGCGACGGACACCGAGGTCGGTTTCAAGGCCGAG
GTGGGCGATGCGACGGACGAGCTGACGTCG
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