mRNA_L-elsbetiae_contig15279.3744.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15279.3744.1
Unique NamemRNA_L-elsbetiae_contig15279.3744.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15279.3744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15279contigL-elsbetiae_contig15279:2260..2828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size569
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15279.3744.1prot_L-elsbetiae_contig15279.3744.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15279 2270..2782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.943123-UTR-L-elsbetiae_contig15279:2259..22691622815621.943123-UTR-L-elsbetiae_contig15279:2259..2269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 2260..2269 +
1691682996.8341067-UTR-L-elsbetiae_contig15279:2259..22691691682996.8341067-UTR-L-elsbetiae_contig15279:2259..2269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 2260..2269 +
1622815621.9722085-UTR-L-elsbetiae_contig15279:2782..28281622815621.9722085-UTR-L-elsbetiae_contig15279:2782..2828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 2783..2828 +
1691682996.855785-UTR-L-elsbetiae_contig15279:2782..28281691682996.855785-UTR-L-elsbetiae_contig15279:2782..2828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 2783..2828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.9593225-CDS-L-elsbetiae_contig15279:2269..27821622815621.9593225-CDS-L-elsbetiae_contig15279:2269..2782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15279 2270..2782 +
1691682996.8460865-CDS-L-elsbetiae_contig15279:2269..27821691682996.8460865-CDS-L-elsbetiae_contig15279:2269..2782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15279 2270..2782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15279.3744.1

>prot_L-elsbetiae_contig15279.3744.1 ID=prot_L-elsbetiae_contig15279.3744.1|Name=mRNA_L-elsbetiae_contig15279.3744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
MVNQAPAGPRVHQLSGTFRLVLCMYVCFVCDSLGRLAGDLESNARLAPLY
VSFGVFETAAAEEAVAKRQGTCGHPNVTTKYRRRRRHQQQHQHGRSLFLD
NTASDTTNVAAAAAATAIINNSMGTTAVEPLCVCSLASFFFNIANGTTKC
RRRRRCHHQQQQQQQQHGRD*
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mRNA from alignment at L-elsbetiae_contig15279:2260..2828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15279.3744.1 ID=mRNA_L-elsbetiae_contig15279.3744.1|Name=mRNA_L-elsbetiae_contig15279.3744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig15279:2260..2828+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTCGGATCATGGTAAACCAGGCACCCGCCGGACCTCGTGTCCACCAAC
TCTCAGGCACCTTCAGGCTCGTACTTTGCATGTATGTGTGTTTTGTGTGC
GATTCGCTCGGGCGGCTAGCCGGCGATCTGGAGAGCAACGCCAGACTCGC
TCCTCTGTATGTCTCCTTCGGGGTGTTTGAGACAGCAGCGGCCGAGGAAG
CCGTGGCCAAACGGCAGGGGACGTGCGGCCATCCAAACGTCACCACTAAA
TATCGCCGACGCCGCCGCCACCAGCAGCAACATCAGCATGGACGCAGCCT
TTTTCTGGATAACACTGCCAGTGACACTACTAATGTCGCCGCCGCCGCCG
CCGCCACCGCCATCATCAACAACAGCATGGGCACGACTGCTGTTGAGCCT
CTTTGTGTGTGCTCACTCGCCTCTTTCTTCTTTAACATCGCCAATGGCAC
TACTAAATGTCGCCGCCGCCGCCGCTGCCATCATCAACAACAACAACAAC
AACAACAGCACGGACGCGACTGACTAACTACGTTGTTGAGCCTCTCTGTG
TGTGCTCACCTCTTTCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15279:2260..2828+

>mRNA_L-elsbetiae_contig15279.3744.1 ID=mRNA_L-elsbetiae_contig15279.3744.1|Name=mRNA_L-elsbetiae_contig15279.3744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig15279:2260..2828+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAAACCAGGCACCCGCCGGACCTCGTGTCCACCAACTCTCAGGCAC
CTTCAGGCTCGTACTTTGCATGTATGTGTGTTTTGTGTGCGATTCGCTCG
GGCGGCTAGCCGGCGATCTGGAGAGCAACGCCAGACTCGCTCCTCTGTAT
GTCTCCTTCGGGGTGTTTGAGACAGCAGCGGCCGAGGAAGCCGTGGCCAA
ACGGCAGGGGACGTGCGGCCATCCAAACGTCACCACTAAATATCGCCGAC
GCCGCCGCCACCAGCAGCAACATCAGCATGGACGCAGCCTTTTTCTGGAT
AACACTGCCAGTGACACTACTAATGTCGCCGCCGCCGCCGCCGCCACCGC
CATCATCAACAACAGCATGGGCACGACTGCTGTTGAGCCTCTTTGTGTGT
GCTCACTCGCCTCTTTCTTCTTTAACATCGCCAATGGCACTACTAAATGT
CGCCGCCGCCGCCGCTGCCATCATCAACAACAACAACAACAACAACAGCA
CGGACGCGACTGAATGGTAAACCAGGCACCCGCCGGACCTCGTGTCCACC
AACTCTCAGGCACCTTCAGGCTCGTACTTTGCATGTATGTGTGTTTTGTG
TGCGATTCGCTCGGGCGGCTAGCCGGCGATCTGGAGAGCAACGCCAGACT
CGCTCCTCTGTATGTCTCCTTCGGGGTGTTTGAGACAGCAGCGGCCGAGG
AAGCCGTGGCCAAACGGCAGGGGACGTGCGGCCATCCAAACGTCACCACT
AAATATCGCCGACGCCGCCGCCACCAGCAGCAACATCAGCATGGACGCAG
CCTTTTTCTGGATAACACTGCCAGTGACACTACTAATGTCGCCGCCGCCG
CCGCCGCCACCGCCATCATCAACAACAGCATGGGCACGACTGCTGTTGAG
CCTCTTTGTGTGTGCTCACTCGCCTCTTTCTTCTTTAACATCGCCAATGG
CACTACTAAATGTCGCCGCCGCCGCCGCTGCCATCATCAACAACAACAAC
AACAACAACAGCACGGACGCGACTGA
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