mRNA_L-elsbetiae_contig15270.3740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15270.3740.1
Unique NamemRNA_L-elsbetiae_contig15270.3740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15270.3740.1 vs. uniprot
Match: D8LDF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.700e-28
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 3 
Query:    3 TASAAADTLMSLAKRPAAKLALASFLTLAVFAGEVALSSAMAGTGGSGSRGWRALVAP---AFAELEPLPLKSYSEEFSSGLAPVNTLRGLWRTRETRSDGSVLP 308
            T +  A+T+ SLA++  A +ALA+ LT AVF GEV +S  +AG GG         VAP   AFAELEPLPLKSYSEEFSSGLAPVNT+RGLWRTRETR+DGS LP
Sbjct:  108 TTTTTAETVASLARQALATVALAAVLTPAVFIGEVTVSPLLAGKGG---------VAPPTAAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGSALP 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15270.3740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF5_ECTSI7.700e-2863.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15270contigL-elsbetiae_contig15270:2783..3614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size308
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15270.3740.1prot_L-elsbetiae_contig15270.3740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15270 2812..3614 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.696454-UTR-L-elsbetiae_contig15270:2782..28111622815621.696454-UTR-L-elsbetiae_contig15270:2782..2811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15270 2783..2811 +
1691682996.688735-UTR-L-elsbetiae_contig15270:2782..28111691682996.688735-UTR-L-elsbetiae_contig15270:2782..2811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15270 2783..2811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.706986-CDS-L-elsbetiae_contig15270:2811..30431622815621.706986-CDS-L-elsbetiae_contig15270:2811..3043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15270 2812..3043 +
1691682996.702621-CDS-L-elsbetiae_contig15270:2811..30431691682996.702621-CDS-L-elsbetiae_contig15270:2811..3043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15270 2812..3043 +
1622815621.7180717-CDS-L-elsbetiae_contig15270:3567..36141622815621.7180717-CDS-L-elsbetiae_contig15270:3567..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15270 3568..3614 +
1691682996.7164078-CDS-L-elsbetiae_contig15270:3567..36141691682996.7164078-CDS-L-elsbetiae_contig15270:3567..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15270 3568..3614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15270.3740.1

>prot_L-elsbetiae_contig15270.3740.1 ID=prot_L-elsbetiae_contig15270.3740.1|Name=mRNA_L-elsbetiae_contig15270.3740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MSLAKRPAAKLALASFLTLAVFAGEVALSSAMAGTGGSGSRGWRALVAPA
FAELEPLPLKSYSEEFSSGLAPVNTLRGLWRTRETRSDGSVLP
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mRNA from alignment at L-elsbetiae_contig15270:2783..3614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15270.3740.1 ID=mRNA_L-elsbetiae_contig15270.3740.1|Name=mRNA_L-elsbetiae_contig15270.3740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=832bp|location=Sequence derived from alignment at L-elsbetiae_contig15270:2783..3614+ (Laminarionema elsbetiae ELsaHSoW15)
CCACTGCTTCTGCTGCCGCTGACACCTTGATGTCTCTGGCAAAGCGACCG
GCAGCGAAGCTAGCACTAGCATCGTTTCTCACTTTAGCGGTTTTTGCCGG
CGAGGTGGCGCTTTCGTCGGCGATGGCGGGCACCGGCGGGAGCGGGAGCA
GAGGGTGGAGAGCGCTCGTAGCGCCGGCGTTCGCCGAGCTGGAGCCGTTA
CCGTTGAAGTCGTACTCGGAAGAATTCTCCAGCGGGCTCGCACCCGTCAA
CACCCTGCGCGGTAAGCCATCTGGTACGCATCAGCCGGGCAGAACGGAGG
GAAAAGCTTCGGACTCTGTCTTCGCTCCCTCGCATGCTGACCCATCGCTG
TGTGCGTCGAGCAGCAGCTTTGCCTGCCGCACCTGATACATACCGCCGTC
GCTGCTCTGCCGCTGCCACCATTTCTTAGCACTCTCGTTTTACAAACTGC
AGTTCATCTAGTACCATTCTAATTCGATCTCTGTGTGTGTTGGCCGAGGC
CACGGCCCCGGTGTTGCTTGCATGAAATGTCCTTTCTTAGGCGTGTCATG
CGGGATGAGAAAAACCCTGGAGAATATGGTGCTCAGGACCAATATACCAG
CAGCATGTACCACTACCATACCACAGTAGCTCCCCGAATCGATTGCACCC
GTACATACGACGGTGTTTCTAATCGCAGTAGTATCGATGCTAGTTCCTTC
GTTGACCGCGGTTATGTACCGCGACGAGATTGACAGCTCAAACCACTGCT
ATACTGTTGCGGCGTAACTTGTACGTCACCCAAAGGTTTGTGGCGCACAC
GCGAGACACGGAGCGATGGCTCCGTGCTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15270:2783..3614+

>mRNA_L-elsbetiae_contig15270.3740.1 ID=mRNA_L-elsbetiae_contig15270.3740.1|Name=mRNA_L-elsbetiae_contig15270.3740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig15270:2783..3614+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTGGCAAAGCGACCGGCAGCGAAGCTAGCACTAGCATCGTTTCT
CACTTTAGCGGTTTTTGCCGGCGAGGTGGCGCTTTCGTCGGCGATGGCGG
GCACCGGCGGGAGCGGGAGCAGAGGGTGGAGAGCGCTCGTAGCGCCGGCG
TTCGCCGAGCTGGAGCCGTTACCGTTGAAGTCGTACTCGGAAGAATTCTC
CAGCGGGCTCGCACCCGTCAACACCCTGCGCGATGTCTCTGGCAAAGCGA
CCGGCAGCGAAGCTAGCACTAGCATCGTTTCTCACTTTAGCGGTTTTTGC
CGGCGAGGTGGCGCTTTCGTCGGCGATGGCGGGCACCGGCGGGAGCGGGA
GCAGAGGGTGGAGAGCGCTCGTAGCGCCGGCGTTCGCCGAGCTGGAGCCG
TTACCGTTGAAGTCGTACTCGGAAGAATTCTCCAGCGGGCTCGCACCCGT
CAACACCCTGCGCGGTTTGTGGCGCACACGCGAGACACGGAGCGATGGCT
CCGTGCTGCCGGTTTGTGGCGCACACGCGAGACACGGAGCGATGGCTCCG
TGCTGCCG
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