mRNA_L-elsbetiae_contig15255.3734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15255.3734.1
Unique NamemRNA_L-elsbetiae_contig15255.3734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15255.3734.1 vs. uniprot
Match: D8LH71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH71_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.370e-101
Identity = 165/208 (79.33%), Postives = 181/208 (87.02%), Query Frame = 1 
Query:    1 MLGELGEGESAAEGIPQELAHDLIHLMAHQKMVVETQHILSRCHTDDAMVVVGSDVKLRLDILAIDEALENALLIHDPNEPSKHFECLLERFDLLRKSLANVANKPIITEKWPEMRAALVRQAALSCLLAQQRSHAGPEAFDWGQVSTKPYIRVVNRLIPEVDTDLDALDDEGGLELMSASKERRNLTDVFLEKRRGVSSLKLRTLLK 624
            M+GELG+GESA +GIPQ+LAHDLIHLMAHQKMVVETQHILSRCH+DDA+VVVGSDVKLRLDILAIDE LENALL HD  +PSK FE LLERFD+L KSLAN  +  IITE+WP+MRAALVRQAALSC LAQQR+HA PE FDWG V TK YI+VV+RLIP+VD DLDALDDE   E MSASKERRNLTDVF EK   VSS+KLRTLLK
Sbjct:    1 MVGELGDGESATDGIPQQLAHDLIHLMAHQKMVVETQHILSRCHSDDAIVVVGSDVKLRLDILAIDEELENALLNHDQKDPSKPFERLLERFDILHKSLANT-DSAIITERWPQMRAALVRQAALSCFLAQQRNHARPEPFDWGSVCTKAYIKVVDRLIPQVDFDLDALDDE---EQMSASKERRNLTDVFKEKHCSVSSIKLRTLLK 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15255.3734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH71_ECTSI1.370e-10179.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15255contigL-elsbetiae_contig15255:479..2613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-24_000790.1
Exons3
Model size651
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15255.3734.1prot_L-elsbetiae_contig15255.3734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15255 479..2613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.9387534-CDS-L-elsbetiae_contig15255:478..7631622815620.9387534-CDS-L-elsbetiae_contig15255:478..763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15255 479..763 -
1691682996.1890724-CDS-L-elsbetiae_contig15255:478..7631691682996.1890724-CDS-L-elsbetiae_contig15255:478..763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15255 479..763 -
1622815620.9507487-CDS-L-elsbetiae_contig15255:1184..12651622815620.9507487-CDS-L-elsbetiae_contig15255:1184..1265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15255 1185..1265 -
1691682996.2083845-CDS-L-elsbetiae_contig15255:1184..12651691682996.2083845-CDS-L-elsbetiae_contig15255:1184..1265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15255 1185..1265 -
1622815620.9628985-CDS-L-elsbetiae_contig15255:2328..26131622815620.9628985-CDS-L-elsbetiae_contig15255:2328..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15255 2329..2613 -
1691682996.21943-CDS-L-elsbetiae_contig15255:2328..26131691682996.21943-CDS-L-elsbetiae_contig15255:2328..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15255 2329..2613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15255.3734.1

>prot_L-elsbetiae_contig15255.3734.1 ID=prot_L-elsbetiae_contig15255.3734.1|Name=mRNA_L-elsbetiae_contig15255.3734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MLGELGEGESAAEGIPQELAHDLIHLMAHQKMVVETQHILSRCHTDDAMV
VVGSDVKLRLDILAIDEALENALLIHDPNEPSKHFECLLERFDLLRKSLA
NVANKPIITEKWPEMRAALVRQAALSCLLAQQRSHAGPEAFDWGQVSTKP
YIRVVNRLIPEVDTDLDALDDEGGLELMSASKERRNLTDVFLEKRRGVSS
LKLRTLLKVSAEHHGG*
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mRNA from alignment at L-elsbetiae_contig15255:479..2613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15255.3734.1 ID=mRNA_L-elsbetiae_contig15255.3734.1|Name=mRNA_L-elsbetiae_contig15255.3734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2135bp|location=Sequence derived from alignment at L-elsbetiae_contig15255:479..2613- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGGGGAGCTCGGTGAAGGAGAATCAGCTGCAGAGGGTATTCCTCA
GGAGCTCGCCCATGATTTGATTCACCTTATGGCTCACCAAAAAATGGTAG
TGGAGACACAGCACATCCTCTCACGTTGCCATACCGACGATGCCATGGTC
GTTGTTGGGAGCGATGTGAAGCTAAGGTTGGACATCCTTGCCATTGACGA
AGCGCTCGAGAATGCCTTGCTCATCCACGACCCGAACGAGCCGTCAAAGC
ACTTTGAATGCCTTCTTGAGCGGTTTGACCTCCTGGTGAGAAGCTAAACA
GCGCATGTATGTGCCAAGAAGTTTACTTTTTGTTGTACTCCGGAGTAATT
TAGCCGACAAATGTACACAGAGCAGTCTACCCCCCGGGCTTCCTCTCCCG
TGTGTACCTTAGAAAACTGGTGTAGCGGTCTCATTGCGCAGGCGCAAGTC
ACTAAAACCGCGATGTATTCTTTGAGCGAATGGATGTACAGTTTTTTTTC
AACAGAAATTCGTACGAAATAGCTCCGAGAGCGAATAAACGGCCATCCTT
TCCAAAAAAGTAAACTGCTGCGCTGTGTTCCGACATATTTACCATATGTA
CCACTTTTTAATAGAGGGAAAGACATCGGATGATGAATGAACATGGCCCG
CTTGAAATTTGGGCCACACACGCTAAGCGTTTCCACAGACATGGACGAAA
GCGAGAGAAAAAGCTCACTTTGCAGAAAAACTAAAACTCGCTCCCGCCGG
GTTTCGAACCCGTGACCTGCCTGCTAAGGTGTTCGGGGATACCGACTACC
GTAGGTGACACAAGATACCACACCCCCTGGACCGACTTTTAGAGCTCCAT
TACTCCGTTACGAAGAGGGTGCCAGCACAAAACGGCACATTTTCGGACAG
CCCTGGACTGGGTTTTTCCAACGCCACCCCTCTCGGCACTGGCACTCTTC
CTGAGGAGGAATCGCGCTTTGAAAATCTGCCCAAGGGGTGTGGTATCTTG
TGTCACCTACGGTACACAGATCACCGGGGCGACCGGCTTGCATCGTTTGG
AACACGAAATATCTTGTACATAGTATTCTTCCTCCGGCTGATTTCTCAAG
TCAGCGAGTGGCCCCATTTCACATTCATCTACATCCGTAGATCGGCACAA
GGATTTCAAGCTTGAAGGTCAGGGAACAAAGCTTCATTAAGATGCTTGCT
TTAGCTCCATGCCCCATGAGCTTTCCGGATGCCGGACAGCATTACCTTTA
CCCCTCAAATATGTCTACCTGGCATCCTCTTATGTACGAGGGGCCATGAC
TCAGCTCTCTCTCTCTCTGCGTTCCGCAACTCGCACCTTGCTTCTCAGCG
CAAGAGCCTGGCAAACGTCGCCAACAAGCCCATCATCACGGAAAAATGGC
CGGAGATGAGGGCTGCTCTCGTTCGACAGGTAAAACAGACAGGCAGGATC
ACATGGTCAATACTCAAACTTATGCACATTACCTTTCTTTCGGGATTTGT
CGACGGGCCCTGCTCGGGAAAGTCGTCGCGTGACGTCGTCCATTCGGAAG
GGTGGTGTGCTGTTACTGCGTTTGCTATTTGGGCAAAGTGTTTTGATCTC
TTTCGGTAGACTAATGTCTTTCATTGTCTGCACGGCTGTTGTTTGATCGA
AAAACAAGCTTTCTGTCGAACTTGTCAATTTTTCCCCAATTTTTGTTTTA
GAGAGCGATATTCGGAAGCCAACCAGCAACCAGCCGTATAGCTTTGTTTG
CCTCTTGTTCTCGTATTTTCGCGCATGAGTCATCAGCAACGATATCCTCC
CTCAACCATGTCCACTGCTGTTGCTATCGTTCGTTCGCAATGGCGGCCAG
GCCGCACTCTCCTGTTTGCTAGCCCAACAGAGGAGCCACGCAGGGCCCGA
AGCCTTCGACTGGGGTCAAGTCTCTACGAAGCCGTACATCAGAGTGGTGA
ACAGACTCATCCCAGAAGTGGATACGGATCTGGATGCGCTTGATGACGAA
GGAGGATTAGAGCTGATGTCTGCATCGAAGGAGAGGCGGAATCTGACCGA
CGTATTCTTGGAGAAGCGTCGCGGCGTAAGTAGCCTCAAACTTCGCACAC
TGCTGAAGGTGAGTGCTGAACACCATGGGGGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15255:479..2613-

>mRNA_L-elsbetiae_contig15255.3734.1 ID=mRNA_L-elsbetiae_contig15255.3734.1|Name=mRNA_L-elsbetiae_contig15255.3734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig15255:479..2613- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGGGGAGCTCGGTGAAGGAGAATCAGCTGCAGAGGGTATTCCTCA
GGAGCTCGCCCATGATTTGATTCACCTTATGGCTCACCAAAAAATGGTAG
TGGAGACACAGCACATCCTCTCACGTTGCCATACCGACGATGCCATGGTC
GTTGTTGGGAGCGATGTGAAGCTAAGGTTGGACATCCTTGCCATTGACGA
AGCGCTCGAGAATGCCTTGCTCATCCACGACCCGAACGAGCCGTCAAAGC
ACTTTGAATGCCTTCTTGAGCGGTTTGACCTCCTGATGCTTGGGGAGCTC
GGTGAAGGAGAATCAGCTGCAGAGGGTATTCCTCAGGAGCTCGCCCATGA
TTTGATTCACCTTATGGCTCACCAAAAAATGGTAGTGGAGACACAGCACA
TCCTCTCACGTTGCCATACCGACGATGCCATGGTCGTTGTTGGGAGCGAT
GTGAAGCTAAGGTTGGACATCCTTGCCATTGACGAAGCGCTCGAGAATGC
CTTGCTCATCCACGACCCGAACGAGCCGTCAAAGCACTTTGAATGCCTTC
TTGAGCGGTTTGACCTCCTGCGCAAGAGCCTGGCAAACGTCGCCAACAAG
CCCATCATCACGGAAAAATGGCCGGAGATGAGGGCTGCTCTCGTTCGACA
GCGCAAGAGCCTGGCAAACGTCGCCAACAAGCCCATCATCACGGAAAAAT
GGCCGGAGATGAGGGCTGCTCTCGTTCGACAGGCCGCACTCTCCTGTTTG
CTAGCCCAACAGAGGAGCCACGCAGGGCCCGAAGCCTTCGACTGGGGTCA
AGTCTCTACGAAGCCGTACATCAGAGTGGTGAACAGACTCATCCCAGAAG
TGGATACGGATCTGGATGCGCTTGATGACGAAGGAGGATTAGAGCTGATG
TCTGCATCGAAGGAGAGGCGGAATCTGACCGACGTATTCTTGGAGAAGCG
TCGCGGCGTAAGTAGCCTCAAACTTCGCACACTGCTGAAGGTGAGTGCTG
AACACCATGGGGGTTGAGCCGCACTCTCCTGTTTGCTAGCCCAACAGAGG
AGCCACGCAGGGCCCGAAGCCTTCGACTGGGGTCAAGTCTCTACGAAGCC
GTACATCAGAGTGGTGAACAGACTCATCCCAGAAGTGGATACGGATCTGG
ATGCGCTTGATGACGAAGGAGGATTAGAGCTGATGTCTGCATCGAAGGAG
AGGCGGAATCTGACCGACGTATTCTTGGAGAAGCGTCGCGGCGTAAGTAG
CCTCAAACTTCGCACACTGCTGAAGGTGAGTGCTGAACACCATGGGGGTT
GA
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