mRNA_L-elsbetiae_contig15245.3730.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15245.3730.1
Unique NamemRNA_L-elsbetiae_contig15245.3730.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15245.3730.1 vs. uniprot
Match: A0A6H5JC04_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC04_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.990e-6
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 MYILSAKDSNNRIIHVSTVLADKENETNYREGKKAGARRNQFCIQYSSG 147
            MY+L   DSNN+IIHVSTVLADKEN TNY+   +   R        SSG
Sbjct:  263 MYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSG 311
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BLAST of mRNA_L-elsbetiae_contig15245.3730.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.380e-5
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 MYILSAKDSNNRIIHVSTVLADKENETNYR 90
            MYIL   DSNN+IIHVSTVLADKEN TNY+
Sbjct:    1 MYILCMHDSNNKIIHVSTVLADKENATNYK 30
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BLAST of mRNA_L-elsbetiae_contig15245.3730.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.890e-5
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    1 MYILSAKDSNNRIIHVSTVLADKENETNYREGKKAGARRNQFCIQYSSGPSIVPVE 168
            MY+L   DSNN+IIHV+TVLADKEN TNY+   +   R        SSG     ++
Sbjct:   95 MYVLCMHDSNNKIIHVTTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFVID 150
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BLAST of mRNA_L-elsbetiae_contig15245.3730.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-5
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 MYILSAKDSNNRIIHVSTVLADKENETNYREGKKAGARRNQFCIQYSSG 147
            MY+L   DSNN+IIHVSTVLADKEN TNY    +   R        SSG
Sbjct:  177 MYVLCMHDSNNKIIHVSTVLADKENATNYEFLLQQTCRNEHMQRLLSSG 225
[Close]
BLAST of mRNA_L-elsbetiae_contig15245.3730.1 vs. uniprot
Match: A0A6H5KQH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH4_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 4.320e-5
Identity = 26/49 (53.06%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 MYILSAKDSNNRIIHVSTVLADKENETNYREGKKAGARRNQFCIQYSSG 147
            MY L   +SNN+IIHVSTVLADKEN TNY+   +   R        SSG
Sbjct:   17 MYALCMHNSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMQRLLSSG 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15245.3730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JC04_9PHAE9.990e-655.10MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9J4_9PHAE1.380e-580.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L9F2_9PHAE1.890e-546.43MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6Q0_ECTSI1.900e-555.10MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KQH4_9PHAE4.320e-553.06MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15245contigL-elsbetiae_contig15245:2172..2367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.4814217-CDS-L-elsbetiae_contig15245:2171..22601622815620.4814217-CDS-L-elsbetiae_contig15245:2171..2260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15245 2172..2260 +
1691682995.8461378-CDS-L-elsbetiae_contig15245:2171..22601691682995.8461378-CDS-L-elsbetiae_contig15245:2171..2260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15245 2172..2260 +
1622815620.5020883-CDS-L-elsbetiae_contig15245:2285..23671622815620.5020883-CDS-L-elsbetiae_contig15245:2285..2367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15245 2286..2367 +
1691682995.8570735-CDS-L-elsbetiae_contig15245:2285..23671691682995.8570735-CDS-L-elsbetiae_contig15245:2285..2367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15245 2286..2367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15245.3730.1prot_L-elsbetiae_contig15245.3730.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15245 2172..2367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15245.3730.1

>prot_L-elsbetiae_contig15245.3730.1 ID=prot_L-elsbetiae_contig15245.3730.1|Name=mRNA_L-elsbetiae_contig15245.3730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MYILSAKDSNNRIIHVSTVLADKENETNYREGKKAGARRNQFCIQYSSGP
SIVPVE*
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mRNA from alignment at L-elsbetiae_contig15245:2172..2367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15245.3730.1 ID=mRNA_L-elsbetiae_contig15245.3730.1|Name=mRNA_L-elsbetiae_contig15245.3730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=196bp|location=Sequence derived from alignment at L-elsbetiae_contig15245:2172..2367+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATCCTCTCCGCGAAGGACAGCAACAACCGCATTATCCACGTCTC
CACTGTGCTCGCCGACAAGGAAAACGAGACCAACTACAGGTTCGGAAAAT
CAGAAATATACAAGAGAGGGAAAAAAAGCCGGGGCCAGAAGAAACCAGTT
TTGTATACAGTACAGTAGTGGGCCCTCAATAGTGCCGGTTGAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15245:2172..2367+

>mRNA_L-elsbetiae_contig15245.3730.1 ID=mRNA_L-elsbetiae_contig15245.3730.1|Name=mRNA_L-elsbetiae_contig15245.3730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig15245:2172..2367+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATCCTCTCCGCGAAGGACAGCAACAACCGCATTATCCACGTCTC
CACTGTGCTCGCCGACAAGGAAAACGAGACCAACTACAGATGTACATCCT
CTCCGCGAAGGACAGCAACAACCGCATTATCCACGTCTCCACTGTGCTCG
CCGACAAGGAAAACGAGACCAACTACAGAGAGGGAAAAAAAGCCGGGGCC
AGAAGAAACCAGTTTTGTATACAGTACAGTAGTGGGCCCTCAATAGTGCC
GGTTGAATAGAGAGGGAAAAAAAGCCGGGGCCAGAAGAAACCAGTTTTGT
ATACAGTACAGTAGTGGGCCCTCAATAGTGCCGGTTGAATAG
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