mRNA_L-elsbetiae_contig1523.3725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1523.3725.1
Unique NamemRNA_L-elsbetiae_contig1523.3725.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1523.3725.1 vs. uniprot
Match: A0A6H5JH57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH57_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.500e-5
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 3 
Query: 2010 GRATSSYHLAPSQREVECHLRSLAMLADEGRQIEEDYRPALAMQKDEAAAA 2162
             + T+  H AP Q + E HLR+ A+ ADE RQ+EEDYR ALAMQK EAAAA
Sbjct:   10 AQGTTDAHYAPFQPDAENHLRNFAVTADERRQMEEDYRLALAMQKGEAAAA 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1523.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH57_9PHAE4.500e-560.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1523contigL-elsbetiae_contig1523:1871..4670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2166
Cds size1395
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1523.3725.1prot_L-elsbetiae_contig1523.3725.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1523 1883..3911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.8942783-UTR-L-elsbetiae_contig1523:1870..18821622815619.8942783-UTR-L-elsbetiae_contig1523:1870..1882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1523 1871..1882 +
1691682995.4825242-UTR-L-elsbetiae_contig1523:1870..18821691682995.4825242-UTR-L-elsbetiae_contig1523:1870..1882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1523 1871..1882 +
1622815619.934336-UTR-L-elsbetiae_contig1523:3911..46701622815619.934336-UTR-L-elsbetiae_contig1523:3911..4670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1523 3912..4670 +
1691682995.516368-UTR-L-elsbetiae_contig1523:3911..46701691682995.516368-UTR-L-elsbetiae_contig1523:3911..4670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1523 3912..4670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.9085927-CDS-L-elsbetiae_contig1523:1882..32121622815619.9085927-CDS-L-elsbetiae_contig1523:1882..3212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1523 1883..3212 +
1691682995.493233-CDS-L-elsbetiae_contig1523:1882..32121691682995.493233-CDS-L-elsbetiae_contig1523:1882..3212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1523 1883..3212 +
1622815619.923442-CDS-L-elsbetiae_contig1523:3846..39111622815619.923442-CDS-L-elsbetiae_contig1523:3846..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1523 3847..3911 +
1691682995.5076513-CDS-L-elsbetiae_contig1523:3846..39111691682995.5076513-CDS-L-elsbetiae_contig1523:3846..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1523 3847..3911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1523.3725.1

>prot_L-elsbetiae_contig1523.3725.1 ID=prot_L-elsbetiae_contig1523.3725.1|Name=mRNA_L-elsbetiae_contig1523.3725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=465bp
MPRRCGHHCCTKEPSYSKAVGKAEYCRDHATDGMVDVRSKRCTHHGCTKK
PAYGKAGGKAEYCSGHAKDGMVDVISKRCTHGGCTKGASYSKAGGKAEYC
SDHSKDGMVDVISKKRCTHGGCTKGPSYGKAGGKAEYCSGHAKDGMVNVR
SKRCTHGGCTKRPSYGKAGGKAEYCSGHAKDGMVDVISKRCTHGGCTKGT
SYGKAGGKAEYCSGHAKDGMVDVMSKRCTHGGCTKQPSYGNAGGKAEYCS
DHSKDGMVNVKSKRCTHSGCAKKPAYGKAGGKAEYCSGHAKDGMVNVKSK
RCVFAGCTTSANYGIRKFCARHKEEGMVRVSGRSIGDSGSSGRIGDAGAV
GSGSTPSRVGSCGMQGSRVPVPSAAGASSGENKKTNKRSADSAGLHPVRV
KSETVDNRVSDDDNSPTVCPEADAVVKTEDIGLPCKVEPTQAAGRACVAR
TKRRNTTKGQARVS*
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mRNA from alignment at L-elsbetiae_contig1523:1871..4670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1523.3725.1 ID=mRNA_L-elsbetiae_contig1523.3725.1|Name=mRNA_L-elsbetiae_contig1523.3725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2800bp|location=Sequence derived from alignment at L-elsbetiae_contig1523:1871..4670+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGGGCAGGGATGCCTCGCAGATGTGGTCACCACTGTTGCACCAAGGA
GCCGTCATACAGCAAGGCTGTCGGCAAGGCGGAGTACTGCCGTGACCATG
CTACGGATGGGATGGTGGACGTGAGGAGCAAGAGATGCACCCACCATGGT
TGCACCAAGAAGCCGGCATACGGCAAGGCTGGTGGCAAGGCGGAGTACTG
CAGTGGGCATGCGAAGGATGGGATGGTGGACGTTATCAGCAAGAGATGCA
CACACGGCGGCTGCACCAAGGGGGCGTCATACAGCAAGGCTGGTGGCAAG
GCGGAGTACTGCAGTGACCATTCTAAGGATGGGATGGTGGACGTTATCAG
CAAGAAGAGATGCACCCACGGCGGCTGCACCAAGGGGCCGTCATACGGCA
AGGCTGGTGGCAAGGCGGAGTACTGCAGTGGACATGCTAAGGATGGGATG
GTGAACGTGAGGAGCAAGAGATGCACACACGGCGGCTGCACCAAGCGGCC
GTCATACGGCAAGGCTGGTGGCAAAGCGGAGTACTGCAGTGGACATGCTA
AGGATGGGATGGTGGACGTTATCAGCAAGAGATGCACCCACGGCGGTTGC
ACCAAGGGGACGTCATACGGCAAGGCTGGTGGCAAGGCGGAGTACTGCAG
TGGACATGCTAAGGATGGGATGGTGGACGTTATGAGCAAGAGATGCACAC
ACGGCGGTTGCACCAAGCAGCCGTCATACGGCAACGCTGGTGGCAAGGCG
GAGTACTGCAGTGACCATTCTAAGGATGGGATGGTGAATGTGAAGAGCAA
GCGATGCACACACAGCGGCTGCGCCAAGAAGCCGGCATACGGCAAGGCTG
GTGGCAAGGCGGAGTACTGCAGTGGACATGCTAAGGATGGGATGGTGAAC
GTGAAGAGCAAGAGATGCGTTTTTGCGGGCTGCACTACAAGTGCTAACTA
CGGCATCCGAAAGTTCTGCGCACGGCACAAAGAGGAAGGCATGGTCCGTG
TTTCTGGCCGGTCCATTGGGGACAGCGGATCAAGTGGTAGGATTGGTGAT
GCGGGAGCAGTGGGTAGTGGCAGCACTCCTAGCCGTGTTGGTTCCTGCGG
GATGCAAGGGAGCCGCGTTCCTGTGCCCTCCGCCGCAGGTGCCTCCTCCG
GCGAGAACAAGAAGACCAACAAGCGTTCTGCTGATAGCGCGGGCTTGCAC
CCAGTTCGGGTGAAGAGCGAGACGGTCGACAACAGGGTGTCCGACGACGA
TAATTCTCCGACGGTTTGTCCGGAGGCAGACGCTGTGGTGAAGACGGAGG
ATATCGGTTTGCCTTGCAAGGTGGAGCCGACACAAGCTGCAGGTGCATTG
AAAACAGGCTGTTGGTGTGTCGTAGTGCTGTTGAACTTTCAGGTTGGTGA
GGAAAAGAGGGGCGATGGTTGAAGGCAGACTCAGCTACAGTAGTAGTGCC
ACGCTCAACAACTGAAGAGGGATGTAGACACCGCAGCTGCAGGGATGAAC
GGCGATGAGGTTCAGAAACAGTGGCGAGACCGGCTTGGCAGTTTTACCTA
CCTCGATTTGCCGCCTGCGATGCATGCTTCGTAAGCGCTGGAGACCCACG
GGCTACAATATCGTGTGATCGTATGGTACAGAGGGGGGGCGTGTTGCACT
TGCCTCGTGATTCGTTTTTCGGCCGTCTACCCGTGTGCAAATTGAGCTGC
CTAGCTTGAGCTCTGACATTCAGTCTGTTCTTGTCTACCATTGGCGCGGT
TTTTTCTTTGTGTGCCGCGGAAACCACTTTTGCTCGTTCGCACCCCAAGT
TTTTCTGACACACACAGACCTTGTGGTTGTCACCTTACCTGCCAAATCAC
CATTTTGCATGACAGGTATCATACCACACACACCCCTGGCTTTGTTTTAT
ATCTACTGAGATCTCATCTCCATGCCTATCGTCCGGACGTGGCTCTTGTG
CGCCCGCCTCCCCTCAATCAATGCAGGCCGGGCATGCGTAGCGAGGACGA
AGCGGAGAAATACCACGAAGGGGCAAGCGCGAGTTTCCTGATGTTGCACC
AACGGCAGCAGCACCGCAGTGTACACGGCGGACCGTGACGAGATCGATTA
TCCACGAGCTCCTGTAAACCGCGAACCCACTGCTCCGCGTGTGATTGTAA
TATAACGGTGTGTAGTTGTTGAGCGGCGTCGGCTGTCGCACATACATACG
CGTTTTTTCTTTTCTTGTGGGCACGATACGTCGTACATACATACGAGTAG
ATGTCCTGTATCTGCCGTGAATATTCAGGGTGTATGTAGACTGCCATCTA
GTTCATGTGGCTTTGCTCGTGTCTCTTTTATTATAACTTTGCCTGATTCT
GGATCGCGTAATTTTCTTCGAATTGGTTGTCGGTGTCCTGATGTGGCCTG
GTTCAAAGGACTTCGCTTGTTTATCGCGGCCGACCCTTGGTAGAACGATA
TCTCTCCATGGTGGAGGTCCTGCTTGCGGCGCTAGATACCTTTGGCAGTT
GCAGCTGAGTTTCAAACCGCTACAGTATGCTTTTGGCCGTGGTGTGCCTC
TACAATGTTCTATAGATCCGGCACGGCAGTGGCGAATGCAGTTGTCATCA
TGTTGAACTCATGCTGAATTGCGAGTTTTGAGATTTGGTGGCGGGTCGTG
CAACCAGTAGTTACCATCTCGCCCCATCCCAGCGGGAGGTGGAGTGCCAC
CTAAGAAGCTTGGCGATGTTGGCCGACGAGGGGAGGCAGATAGAGGAGGA
CTATCGCCCGGCGCTCGCGATGCAGAAAGACGAGGCAGCTGCTGCGGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1523:1871..4670+

>mRNA_L-elsbetiae_contig1523.3725.1 ID=mRNA_L-elsbetiae_contig1523.3725.1|Name=mRNA_L-elsbetiae_contig1523.3725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2790bp|location=Sequence derived from alignment at L-elsbetiae_contig1523:1871..4670+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGCAGATGTGGTCACCACTGTTGCACCAAGGAGCCGTCATACAG
CAAGGCTGTCGGCAAGGCGGAGTACTGCCGTGACCATGCTACGGATGGGA
TGGTGGACGTGAGGAGCAAGAGATGCACCCACCATGGTTGCACCAAGAAG
CCGGCATACGGCAAGGCTGGTGGCAAGGCGGAGTACTGCAGTGGGCATGC
GAAGGATGGGATGGTGGACGTTATCAGCAAGAGATGCACACACGGCGGCT
GCACCAAGGGGGCGTCATACAGCAAGGCTGGTGGCAAGGCGGAGTACTGC
AGTGACCATTCTAAGGATGGGATGGTGGACGTTATCAGCAAGAAGAGATG
CACCCACGGCGGCTGCACCAAGGGGCCGTCATACGGCAAGGCTGGTGGCA
AGGCGGAGTACTGCAGTGGACATGCTAAGGATGGGATGGTGAACGTGAGG
AGCAAGAGATGCACACACGGCGGCTGCACCAAGCGGCCGTCATACGGCAA
GGCTGGTGGCAAAGCGGAGTACTGCAGTGGACATGCTAAGGATGGGATGG
TGGACGTTATCAGCAAGAGATGCACCCACGGCGGTTGCACCAAGGGGACG
TCATACGGCAAGGCTGGTGGCAAGGCGGAGTACTGCAGTGGACATGCTAA
GGATGGGATGGTGGACGTTATGAGCAAGAGATGCACACACGGCGGTTGCA
CCAAGCAGCCGTCATACGGCAACGCTGGTGGCAAGGCGGAGTACTGCAGT
GACCATTCTAAGGATGGGATGGTGAATGTGAAGAGCAAGCGATGCACACA
CAGCGGCTGCGCCAAGAAGCCGGCATACGGCAAGGCTGGTGGCAAGGCGG
AGTACTGCAGTGGACATGCTAAGGATGGGATGGTGAACGTGAAGAGCAAG
AGATGCGTTTTTGCGGGCTGCACTACAAGTGCTAACTACGGCATCCGAAA
GTTCTGCGCACGGCACAAAGAGGAAGGCATGGTCCGTGTTTCTGGCCGGT
CCATTGGGGACAGCGGATCAAGTGGTAGGATTGGTGATGCGGGAGCAGTG
GGTAGTGGCAGCACTCCTAGCCGTGTTGGTTCCTGCGGGATGCAAGGGAG
CCGCGTTCCTGTGCCCTCCGCCGCAGGTGCCTCCTCCGGCGAGAACAAGA
AGACCAACAAGCGTTCTGCTGATAGCGCGGGCTTGCACCCAGTTCGGGTG
AAGAGCGAGACGGTCGACAACAGGGTGTCCGACGACGATAATTCTCCGAC
GGTTTGTCCGGAGGCAGACGCTGTGGTGAAGACGGAGGATATCGGTTTGC
CTTGCAAGGTGGAGCCGACACAAGCTGCAGATGCCTCGCAGATGTGGTCA
CCACTGTTGCACCAAGGAGCCGTCATACAGCAAGGCTGTCGGCAAGGCGG
AGTACTGCCGTGACCATGCTACGGATGGGATGGTGGACGTGAGGAGCAAG
AGATGCACCCACCATGGTTGCACCAAGAAGCCGGCATACGGCAAGGCTGG
TGGCAAGGCGGAGTACTGCAGTGGGCATGCGAAGGATGGGATGGTGGACG
TTATCAGCAAGAGATGCACACACGGCGGCTGCACCAAGGGGGCGTCATAC
AGCAAGGCTGGTGGCAAGGCGGAGTACTGCAGTGACCATTCTAAGGATGG
GATGGTGGACGTTATCAGCAAGAAGAGATGCACCCACGGCGGCTGCACCA
AGGGGCCGTCATACGGCAAGGCTGGTGGCAAGGCGGAGTACTGCAGTGGA
CATGCTAAGGATGGGATGGTGAACGTGAGGAGCAAGAGATGCACACACGG
CGGCTGCACCAAGCGGCCGTCATACGGCAAGGCTGGTGGCAAAGCGGAGT
ACTGCAGTGGACATGCTAAGGATGGGATGGTGGACGTTATCAGCAAGAGA
TGCACCCACGGCGGTTGCACCAAGGGGACGTCATACGGCAAGGCTGGTGG
CAAGGCGGAGTACTGCAGTGGACATGCTAAGGATGGGATGGTGGACGTTA
TGAGCAAGAGATGCACACACGGCGGTTGCACCAAGCAGCCGTCATACGGC
AACGCTGGTGGCAAGGCGGAGTACTGCAGTGACCATTCTAAGGATGGGAT
GGTGAATGTGAAGAGCAAGCGATGCACACACAGCGGCTGCGCCAAGAAGC
CGGCATACGGCAAGGCTGGTGGCAAGGCGGAGTACTGCAGTGGACATGCT
AAGGATGGGATGGTGAACGTGAAGAGCAAGAGATGCGTTTTTGCGGGCTG
CACTACAAGTGCTAACTACGGCATCCGAAAGTTCTGCGCACGGCACAAAG
AGGAAGGCATGGTCCGTGTTTCTGGCCGGTCCATTGGGGACAGCGGATCA
AGTGGTAGGATTGGTGATGCGGGAGCAGTGGGTAGTGGCAGCACTCCTAG
CCGTGTTGGTTCCTGCGGGATGCAAGGGAGCCGCGTTCCTGTGCCCTCCG
CCGCAGGTGCCTCCTCCGGCGAGAACAAGAAGACCAACAAGCGTTCTGCT
GATAGCGCGGGCTTGCACCCAGTTCGGGTGAAGAGCGAGACGGTCGACAA
CAGGGTGTCCGACGACGATAATTCTCCGACGGTTTGTCCGGAGGCAGACG
CTGTGGTGAAGACGGAGGATATCGGTTTGCCTTGCAAGGTGGAGCCGACA
CAAGCTGCAGGCCGGGCATGCGTAGCGAGGACGAAGCGGAGAAATACCAC
GAAGGGGCAAGCGCGAGTTTCCTGAGCCGGGCATGCGTAGCGAGGACGAA
GCGGAGAAATACCACGAAGGGGCAAGCGCGAGTTTCCTGA
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