mRNA_L-elsbetiae_contig15207.3717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15207.3717.1
Unique NamemRNA_L-elsbetiae_contig15207.3717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A6H5K617_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K617_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 6.460e-70
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:   37 MLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            ML+IN TPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV
Sbjct:    1 MLVINHTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 110
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.160e-64
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:   34 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            +ML+INRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV
Sbjct:  754 EMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 864
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S2KWV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWV3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.380e-60
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 1 
Query:   25 LLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            +L  +L+INRTPNTL NLTVELSTMGD+++VERPQSHTIGPLD  NIRA+IKVSSTETGHIFGTIVYE++ST EK YIN+NDIHMDIMDYI+PA+C++E FRSMWAEFEWENKV
Sbjct:   50 ILLDILVINRTPNTLANLTVELSTMGDMKIVERPQSHTIGPLDQINIRASIKVSSTETGHIFGTIVYEDASTQEKGYINMNDIHMDIMDYIRPATCTDEVFRSMWAEFEWENKV 163
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.300e-58
Identity = 97/111 (87.39%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:   34 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            ++L+INRTP TLTNLTVEL+TMGDLRLVERPQ+HTIGPLD R IRANIKVSSTETGHIFGTIV+ENSSTAEK YINL+DIH+DIMDYI+PA+CSEEAFRSMWAEFEWENKV
Sbjct:  747 EILVINRTPQTLTNLTVELATMGDLRLVERPQAHTIGPLDQRTIRANIKVSSTETGHIFGTIVFENSSTAEKAYINLSDIHLDIMDYIRPATCSEEAFRSMWAEFEWENKV 857
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S2V1X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1X2_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.900e-58
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:   34 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPAS-CSEEAFRSMWAEFEWENKV 366
            ++L+INRTPNTLTNLTVEL+TMGDL+LVERPQS+TIGPLD R IRANIKVSSTETGH+FGTIVYENSSTA+K YINLNDIH+DIMDYI P+S C+++AFR MW EFEWENKV
Sbjct:  100 EILVINRTPNTLTNLTVELATMGDLKLVERPQSYTIGPLDQRTIRANIKVSSTETGHVFGTIVYENSSTAQKAYINLNDIHLDIMDYIYPSSNCTDDAFRRMWEEFEWENKV 211
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S1E5N2_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5N2_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.740e-57
Identity = 88/111 (79.28%), Postives = 103/111 (92.79%), Query Frame = 1 
Query:   34 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            ++L+INRTPNTL NLTVELSTMGD+++VERPQ  T+GPLD   IRA+IKVSSTETGHIFGTIVY+++ST EK YINLNDIHMDIMDYI+PA+C++EAFRSMWAEFEWENKV
Sbjct:   57 EILLINRTPNTLANLTVELSTMGDMKIVERPQPQTLGPLDQATIRASIKVSSTETGHIFGTIVYDDTSTMEKGYINLNDIHMDIMDYIRPATCTDEAFRSMWAEFEWENKV 167
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: F0YGU1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGU1_AURAN)

HSP 1 Score: 194 bits (492), Expect = 9.660e-56
Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:   34 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
             +LI+NRTP+TLTNLTVEL+TMGDL+L+ERPQS T+GPLD R+IRANIKVSSTETGHIFGTIVYE SSTAEKTYINLN+IH+DIMDYI+PASCS++AFR MWAEFEWENKV
Sbjct:  536 DILIVNRTPSTLTNLTVELATMGDLKLIERPQSLTMGPLDQRSIRANIKVSSTETGHIFGTIVYEKSSTAEKTYINLNNIHLDIMDYIRPASCSDQAFRHMWAEFEWENKV 646
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: B8C072_THAPS (Coatomer subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C072_THAPS)

HSP 1 Score: 192 bits (489), Expect = 6.210e-55
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 1 
Query:   25 LLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            +L ++L+INRTPNTL NLTVELSTMGD+++VERPQSHTIGPLD   IRA+IKVSSTETGHIFGTIVYE++ST EK YINLNDIHMDIMDYI+PA+C++E FRSMWAEFEWENKV
Sbjct:  636 ILLEILLINRTPNTLANLTVELSTMGDMKIVERPQSHTIGPLDQMTIRASIKVSSTETGHIFGTIVYEDASTQEKGYINLNDIHMDIMDYIRPATCTDEVFRSMWAEFEWENKV 749
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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S1UYW3_9STRA (Coatomer subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYW3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.650e-55
Identity = 92/111 (82.88%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:   34 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            ++L+INRTPNTL+NLTVELSTMGD+++VERPQ+HTIGPLD   IRA+IKVSSTETGHIFGTIVYE+SST EK YINLNDIHMDIMDYI+PA C++EAFRSMWAEFEWENKV
Sbjct:  706 EILVINRTPNTLSNLTVELSTMGDMKIVERPQAHTIGPLDQMTIRASIKVSSTETGHIFGTIVYEDSSTMEKGYINLNDIHMDIMDYIRPAFCTDEAFRSMWAEFEWENKV 816
[Close]
BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: F0YIR7_AURAN (Coatomer subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIR7_AURAN)

HSP 1 Score: 191 bits (486), Expect = 1.990e-54
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:   25 LLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 366
            +L ++LIINRTP+TLTNLTVEL+TMGDL+LVERPQS TIGPL  R+I ANIKVSSTETGHIFGTIVYENSSTAEKT++NLN+IH+DIMDYI+PA CS+E FRSMWAEFEWENKV
Sbjct:  761 ILLEILIINRTPSTLTNLTVELATMGDLKLVERPQSLTIGPLAQRSINANIKVSSTETGHIFGTIVYENSSTAEKTFVNLNNIHLDIMDYIRPALCSDEMFRSMWAEFEWENKV 874
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K617_9PHAE6.460e-7098.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7C5_ECTSI1.160e-6498.20Coatomer subunit beta n=1 Tax=Ectocarpus siliculos... [more]
A0A7S2KWV3_9STRA1.380e-6080.70Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A835Z7E2_9STRA7.300e-5887.39Coatomer subunit beta n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2V1X2_9STRA7.900e-5882.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1E5N2_9STRA4.740e-5779.28Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
F0YGU1_AURAN9.660e-5683.78Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
B8C072_THAPS6.210e-5580.70Coatomer subunit beta n=1 Tax=Thalassiosira pseudo... [more]
A0A7S1UYW3_9STRA6.650e-5582.88Coatomer subunit beta n=1 Tax=Grammatophora oceani... [more]
F0YIR7_AURAN1.990e-5482.46Coatomer subunit beta n=1 Tax=Aureococcus anophage... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15207contigL-elsbetiae_contig15207:943..1778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue4.4e-56
Seed eggNOG ortholog2880.D7G7C5
Preferred nameCOPB1
KEGG koko:K17301
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030667,GO:0030903,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034613,GO:0036230,GO:0042119,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048475,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060429,GO:0061053,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0101002,GO:0101003,GO:1905952
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1058@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.2343311-CDS-L-elsbetiae_contig15207:942..11281622815619.2343311-CDS-L-elsbetiae_contig15207:942..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15207 943..1128 -
1691682995.0824606-CDS-L-elsbetiae_contig15207:942..11281691682995.0824606-CDS-L-elsbetiae_contig15207:942..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15207 943..1128 -
1622815619.2474487-CDS-L-elsbetiae_contig15207:1598..17781622815619.2474487-CDS-L-elsbetiae_contig15207:1598..1778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15207 1599..1778 -
1691682995.0926821-CDS-L-elsbetiae_contig15207:1598..17781691682995.0926821-CDS-L-elsbetiae_contig15207:1598..1778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15207 1599..1778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15207.3717.1prot_L-elsbetiae_contig15207.3717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15207 943..1778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15207.3717.1

>prot_L-elsbetiae_contig15207.3717.1 ID=prot_L-elsbetiae_contig15207.3717.1|Name=mRNA_L-elsbetiae_contig15207.3717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
FCRLGFLSLLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPL
DSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIK
PASCSEEAFRSMWAEFEWENKV
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mRNA from alignment at L-elsbetiae_contig15207:943..1778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15207.3717.1 ID=mRNA_L-elsbetiae_contig15207.3717.1|Name=mRNA_L-elsbetiae_contig15207.3717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=836bp|location=Sequence derived from alignment at L-elsbetiae_contig15207:943..1778- (Laminarionema elsbetiae ELsaHSoW15)
TTTTGTCGCCTTGGGTTTCTCTCCTTGTTGTGGCAGATGTTGATCATCAA
CCGCACCCCCAACACGCTCACCAACCTGACGGTGGAGCTGTCGACCATGG
GAGACCTCCGCCTGGTGGAGCGGCCACAGTCGCACACCATCGGCCCCCTC
GACTCGCGCAACATCCGCGCCAACATCAAGGTAAAACGTTGTGCAGTTAC
GCCCTGCTTGGCCCCGTTTGTCTTTGGTCTGTGGTGCCGTATTTCGGCGA
AGAACCACCCACCCCTGTGCTGTCGGCGATCAGGGCATCATCGAGGCGGA
GATCGGCGCTCCTGGGAGACTATCGGTCGATCGATCAATCGAAAACCGTT
TTGTGGAGAGGCGAGAGGTCGTACCTGGAAGTTTGCAGTCAACTCTTGGG
TCTCTGCGCTGCCGCGTATCTGATCGCCGTGATTCTTACGTGAAATACCG
TCTCGCTTGTAGAGATGTATGGTAGTGGCCTTGATTTGGAGGGTTTGGGG
CCCGCGCCGAGTGCGACATCCCCGCTTGTGCCTCACCGCGCTTCCTCCCC
CCCCTCCCCTTCTCTCGTTGGTATCCCCTGTTATTTTCCCGTGTCATTGT
GCGTTGCCTTGCACGCACCCACGCGCGTGTACACGCGTGCGTATTGCCAG
GTGAGCAGCACCGAGACGGGGCACATCTTCGGCACGATCGTGTACGAGAA
CAGCTCCACCGCGGAGAAGACGTACATCAACCTGAACGACATCCACATGG
ACATCATGGACTACATCAAGCCCGCTTCGTGCAGCGAGGAGGCCTTCCGC
TCCATGTGGGCCGAGTTCGAGTGGGAGAACAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15207:943..1778-

>mRNA_L-elsbetiae_contig15207.3717.1 ID=mRNA_L-elsbetiae_contig15207.3717.1|Name=mRNA_L-elsbetiae_contig15207.3717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig15207:943..1778- (Laminarionema elsbetiae ELsaHSoW15)
TTTTGTCGCCTTGGGTTTCTCTCCTTGTTGTGGCAGATGTTGATCATCAA
CCGCACCCCCAACACGCTCACCAACCTGACGGTGGAGCTGTCGACCATGG
GAGACCTCCGCCTGGTGGAGCGGCCACAGTCGCACACCATCGGCCCCCTC
GACTCGCGCAACATCCGCGCCAACATCAAGTTTTGTCGCCTTGGGTTTCT
CTCCTTGTTGTGGCAGATGTTGATCATCAACCGCACCCCCAACACGCTCA
CCAACCTGACGGTGGAGCTGTCGACCATGGGAGACCTCCGCCTGGTGGAG
CGGCCACAGTCGCACACCATCGGCCCCCTCGACTCGCGCAACATCCGCGC
CAACATCAAGGTGAGCAGCACCGAGACGGGGCACATCTTCGGCACGATCG
TGTACGAGAACAGCTCCACCGCGGAGAAGACGTACATCAACCTGAACGAC
ATCCACATGGACATCATGGACTACATCAAGCCCGCTTCGTGCAGCGAGGA
GGCCTTCCGCTCCATGTGGGCCGAGTTCGAGTGGGAGAACAAGGTGGTGA
GCAGCACCGAGACGGGGCACATCTTCGGCACGATCGTGTACGAGAACAGC
TCCACCGCGGAGAAGACGTACATCAACCTGAACGACATCCACATGGACAT
CATGGACTACATCAAGCCCGCTTCGTGCAGCGAGGAGGCCTTCCGCTCCA
TGTGGGCCGAGTTCGAGTGGGAGAACAAGGTG
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