mRNA_L-elsbetiae_contig152.3707.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig152.3707.1
Unique NamemRNA_L-elsbetiae_contig152.3707.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig152.3707.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.720e-23
Identity = 134/332 (40.36%), Postives = 155/332 (46.69%), Query Frame = -2 
Query:   99 GHGNSGHFNS-VSSTIYEIDLEADESGGPTAAEAAXXXXXXXXXXXXXXVGRSKKRSARKNPGAEAXXXXXXXXXXXXXXXXXXXXESATSPPSLSRKSGRNMFAKPPGSTSHSRSGSS-----HG--TPSSPSARSTASSDKSGTN--LDAAAGGVGPFSVLTMAAAGAEAKVGVQSPLGRAVQAFANASNGGGSSXXXXXXXXXXXXXXXXXXAVSADEPASMPPLAAA------------TGTGPEATRAXXXXXXXXXXXXLSK-------GGGVSPPVSPRGAPP-ASFEGVVSGFGCMAPQLSP---------RAGSRLPQIDDMD 977
            G  +S +FN+  SS IYEIDLEADE+G        XXXXXXXXXX    +       A +   A                      +   S P  + K+GRNMFAK PGS+S SR G       HG  TP+SPS   +  +D+SG         G  G FSVL  AAA AE KVGV+SP GRAV+A A A  GGGSS                   VS   P  MP L AA            + T   A  A              K       GGG  P +SPRGAPP A F G++SGFGCMAPQLSP         RAGSRLP+IDD D
Sbjct:  369 GSSSSHNFNARASSPIYEIDLEADENGXXXXXXXXXXXXXXXXXXTGSGLANG---GASEGXXAADGSPTPRKGRAGSASFGTTGEDPDVSTPLRTHKAGRNMFAKAPGSSSRSRVGGXXXXXXHGATTPTSPSNNRSTCTDRSGCGGXXXXXEGVEGGFSVLATAAAFAEVKVGVESPTGRAVRALAAA--GGGSSDKSVVADRSGDS------VVSDGRPPGMPSLPAANHGETSGKPYGVSRTAAAAAVAAGAVAATKAYGIREKFDEEEDTGGGADPALSPRGAPPSAPFGGMLSGFGCMAPQLSPGKGGARLSPRAGSRLPEIDDDD 689
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BLAST of mRNA_L-elsbetiae_contig152.3707.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.290e-12
Identity = 112/329 (34.04%), Postives = 132/329 (40.12%), Query Frame = -2 
Query:  105 GHGNSGHFNS-VSSTIYEIDLEADESGGPTAAEAAXXXXXXXXXXXXXXVGRSKKRSARKNPGAEAXXXXXXXXXXXXXXXXXXXXESATSP-PSLSRKSGRNMFAKPPGSTSHSRSGSSHGTPSSPSARSTASSDKSGTNLDAAAGGVGP-------FSVLTMAAAGAEAKVGVQSPLGRAVQAFANASNGGGSSXXXXXXXXXXXXXXXXXXAVSADEPASMPPLAAA-----TGTGPEATRAXXXXXXXXXXXXLSK--------------GGGVSPPVSPRGAPP-ASFEGVVSGFGCMAPQLSP---------RAGSRLPQIDD 977
            G  +SG+ N+  SS IYEIDLEADE+GG       XXXXX          GR                                  E    P P  + K+GRNMFAK PGS+S SR G                                        FSVL  AAA AE +VGV+SP GRAV+A   A+ GGG S                   VS + P  MP L AA     +G   + +R              +K              G G    +SPRGAPP A F G++SGFGCMAPQLSP         RAGSRLP+IDD
Sbjct: 1146 GGSSSGNLNARASSPIYEIDLEADENGGAAXXXXXXXXXX---------XGRGLADGGXXXXXXXXDGSTTPRRGRAGSASFGTTGEDPDVPTPLRTHKAGRNMFAKAPGSSSKSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSVLATAAAFAEVRVGVESPTGRAVRAL--AAGGGGDSDKSVVADKSGDS------VVSDEGPPGMPSLPAANHGETSGKPYDVSRTAAAAAVAAGAVAAAKAYDIREKPDGEEDTGEGADLALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDD 1457
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig152.3707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE7_9PHAE2.720e-2340.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLC6_ECTSI9.290e-1234.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig152contigL-elsbetiae_contig152:13518..14498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size981
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig152.3707.1prot_L-elsbetiae_contig152.3707.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig152 13620..14450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.1636755-UTR-L-elsbetiae_contig152:13517..136191622815618.1636755-UTR-L-elsbetiae_contig152:13517..13619Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 13518..13619 +
1691682994.3942351-UTR-L-elsbetiae_contig152:13517..136191691682994.3942351-UTR-L-elsbetiae_contig152:13517..13619Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 13518..13619 +
1622815618.1945186-UTR-L-elsbetiae_contig152:14450..144981622815618.1945186-UTR-L-elsbetiae_contig152:14450..14498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 14451..14498 +
1691682994.4154727-UTR-L-elsbetiae_contig152:14450..144981691682994.4154727-UTR-L-elsbetiae_contig152:14450..14498Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 14451..14498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.1813395-CDS-L-elsbetiae_contig152:13619..144501622815618.1813395-CDS-L-elsbetiae_contig152:13619..14450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 13620..14450 +
1691682994.4066398-CDS-L-elsbetiae_contig152:13619..144501691682994.4066398-CDS-L-elsbetiae_contig152:13619..14450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 13620..14450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig152.3707.1

>prot_L-elsbetiae_contig152.3707.1 ID=prot_L-elsbetiae_contig152.3707.1|Name=mRNA_L-elsbetiae_contig152.3707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MSSICGSRLPALGESWGAMQPNPDTTPSNDAGGAPRGETGGETPPPFDNA
MAVAAAAATAAALVASGPVPVAAARGGMLAGSSAETAEPLEPPLTEPSTL
PSYPPLLPPPLLALANACTARPRGDCTPTLASAPAAAMVSTENGPTPPAA
ASRLVPDLSDDAVDLADGDEGVPWELPLLEWEVEPGGFANMLRPDLRERE
GGDVADSALEAPCEEPPAPSPPPPPALASAPGFFRADLFLDLPTASAAPA
MAAAAAASAASAAVGPPLSSASRSIS*
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mRNA from alignment at L-elsbetiae_contig152:13518..14498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig152.3707.1 ID=mRNA_L-elsbetiae_contig152.3707.1|Name=mRNA_L-elsbetiae_contig152.3707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=981bp|location=Sequence derived from alignment at L-elsbetiae_contig152:13518..14498+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGCGGCAGGGGCGAAAGAGAAGACCCAGGCGCACCCTTTTTCTCCTT
TCCGGCGGCGGCAGCCGCCTGGACGTCCCCGCCGTCGTCTTCGTCCAAGT
CCATGTCGTCGATTTGCGGAAGCCGGCTGCCAGCCCTGGGGGAAAGCTGG
GGCGCCATGCAACCAAACCCGGACACGACTCCTTCAAACGATGCGGGAGG
GGCCCCGCGAGGAGAGACGGGGGGGGAAACCCCCCCGCCCTTCGACAACG
CCATGGCGGTCGCGGCCGCAGCAGCAACGGCAGCCGCCCTTGTAGCCTCC
GGACCGGTCCCGGTGGCGGCGGCAAGGGGCGGCATGCTCGCCGGCTCATC
GGCGGAGACCGCAGAGCCGCTTGAGCCACCGCTCACGGAGCCCTCGACGC
TTCCGTCATACCCACCGCTGCTGCCGCCGCCGTTACTGGCGTTGGCGAAC
GCCTGCACCGCGCGGCCGAGGGGCGACTGCACCCCGACCTTGGCCTCCGC
CCCTGCCGCCGCCATGGTCAGCACCGAGAACGGCCCCACTCCGCCGGCGG
CGGCGTCGAGGTTGGTGCCAGACTTGTCGGATGACGCCGTGGACCTGGCG
GACGGGGACGAGGGGGTCCCGTGGGAGCTCCCGCTCCTCGAGTGGGAGGT
CGAGCCGGGGGGCTTCGCGAACATGTTGCGGCCGGACTTGCGCGAGAGGG
AAGGAGGGGACGTGGCCGATTCAGCGCTCGAGGCCCCCTGTGAAGAGCCC
CCCGCGCCGTCACCGCCGCCGCCACCTGCGCTCGCCTCGGCACCGGGGTT
CTTCCGCGCGGACCTCTTCTTGGACCTGCCGACAGCTTCGGCGGCACCGG
CGATGGCGGCGGCGGCGGCGGCCTCGGCGGCTTCGGCGGCGGTAGGCCCA
CCGCTTTCGTCGGCCTCCAGATCGATTTCGTAAATCGTGGAAGACACGCT
GTTGAAGTGACCGCTGTTGCCGTGTCCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig152:13518..14498+

>mRNA_L-elsbetiae_contig152.3707.1 ID=mRNA_L-elsbetiae_contig152.3707.1|Name=mRNA_L-elsbetiae_contig152.3707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig152:13518..14498+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCGATTTGCGGAAGCCGGCTGCCAGCCCTGGGGGAAAGCTGGGG
CGCCATGCAACCAAACCCGGACACGACTCCTTCAAACGATGCGGGAGGGG
CCCCGCGAGGAGAGACGGGGGGGGAAACCCCCCCGCCCTTCGACAACGCC
ATGGCGGTCGCGGCCGCAGCAGCAACGGCAGCCGCCCTTGTAGCCTCCGG
ACCGGTCCCGGTGGCGGCGGCAAGGGGCGGCATGCTCGCCGGCTCATCGG
CGGAGACCGCAGAGCCGCTTGAGCCACCGCTCACGGAGCCCTCGACGCTT
CCGTCATACCCACCGCTGCTGCCGCCGCCGTTACTGGCGTTGGCGAACGC
CTGCACCGCGCGGCCGAGGGGCGACTGCACCCCGACCTTGGCCTCCGCCC
CTGCCGCCGCCATGGTCAGCACCGAGAACGGCCCCACTCCGCCGGCGGCG
GCGTCGAGGTTGGTGCCAGACTTGTCGGATGACGCCGTGGACCTGGCGGA
CGGGGACGAGGGGGTCCCGTGGGAGCTCCCGCTCCTCGAGTGGGAGGTCG
AGCCGGGGGGCTTCGCGAACATGTTGCGGCCGGACTTGCGCGAGAGGGAA
GGAGGGGACGTGGCCGATTCAGCGCTCGAGGCCCCCTGTGAAGAGCCCCC
CGCGCCGTCACCGCCGCCGCCACCTGCGCTCGCCTCGGCACCGGGGTTCT
TCCGCGCGGACCTCTTCTTGGACCTGCCGACAGCTTCGGCGGCACCGGCG
ATGGCGGCGGCGGCGGCGGCCTCGGCGGCTTCGGCGGCGGTAGGCCCACC
GCTTTCGTCGGCCTCCAGATCGATTTCGTAAATGTCGTCGATTTGCGGAA
GCCGGCTGCCAGCCCTGGGGGAAAGCTGGGGCGCCATGCAACCAAACCCG
GACACGACTCCTTCAAACGATGCGGGAGGGGCCCCGCGAGGAGAGACGGG
GGGGGAAACCCCCCCGCCCTTCGACAACGCCATGGCGGTCGCGGCCGCAG
CAGCAACGGCAGCCGCCCTTGTAGCCTCCGGACCGGTCCCGGTGGCGGCG
GCAAGGGGCGGCATGCTCGCCGGCTCATCGGCGGAGACCGCAGAGCCGCT
TGAGCCACCGCTCACGGAGCCCTCGACGCTTCCGTCATACCCACCGCTGC
TGCCGCCGCCGTTACTGGCGTTGGCGAACGCCTGCACCGCGCGGCCGAGG
GGCGACTGCACCCCGACCTTGGCCTCCGCCCCTGCCGCCGCCATGGTCAG
CACCGAGAACGGCCCCACTCCGCCGGCGGCGGCGTCGAGGTTGGTGCCAG
ACTTGTCGGATGACGCCGTGGACCTGGCGGACGGGGACGAGGGGGTCCCG
TGGGAGCTCCCGCTCCTCGAGTGGGAGGTCGAGCCGGGGGGCTTCGCGAA
CATGTTGCGGCCGGACTTGCGCGAGAGGGAAGGAGGGGACGTGGCCGATT
CAGCGCTCGAGGCCCCCTGTGAAGAGCCCCCCGCGCCGTCACCGCCGCCG
CCACCTGCGCTCGCCTCGGCACCGGGGTTCTTCCGCGCGGACCTCTTCTT
GGACCTGCCGACAGCTTCGGCGGCACCGGCGATGGCGGCGGCGGCGGCGG
CCTCGGCGGCTTCGGCGGCGGTAGGCCCACCGCTTTCGTCGGCCTCCAGA
TCGATTTCGTAA
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