mRNA_L-elsbetiae_contig152.3706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig152.3706.1
Unique NamemRNA_L-elsbetiae_contig152.3706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig152.3706.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-15
Identity = 60/124 (48.39%), Postives = 71/124 (57.26%), Query Frame = -2 
Query:  600 VTLEEAIAKSRSRVITPDLTPIAELAEHEFFTDSETESEVSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAGQVAAIPPPSAGSPGQVGRPLAAVQEVPMEAVPLPGLSHPEPSD 971
            V+LE+A+A SRS  +TPDL PIAE+A+   FTDSE  S+VS                                    EKAGQVAAIPPPS+GS G   RPL++VQEVPME VPLPGL+ PE  D
Sbjct:  743 VSLEKALALSRSCTMTPDLKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAM----------EKAGQVAAIPPPSSGSHG---RPLSSVQEVPMEGVPLPGLATPESDD 853
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BLAST of mRNA_L-elsbetiae_contig152.3706.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.630e-15
Identity = 64/150 (42.67%), Postives = 78/150 (52.00%), Query Frame = -2 
Query:  522 VTLEEAIAKSRSRVITPDLTPIAELAEHEFFTDSETESEVSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAGQVAAIPPPSAGSPGQVGRPLAAVQEVPMEAVPLPGLSHPEPSDFSTPRHGVPGGFGGAGSAAAPKAVVE 971
            V+LE+A+  SRSR +TP+L PIAE+A+   FTDSE  S+VS                                    EKAGQVAAIPPPS+GS G   R L++VQEVPME VPLPGL+ PE  D    +       G AGS     +V E
Sbjct: 1514 VSLEKALDLSRSRTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAM----------EKAGQVAAIPPPSSGSHG---RSLSSVQEVPMEGVPLPGLATPEIDDECDLKASAASASGAAGSCQDESSVGE 1650
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig152.3706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE7_9PHAE1.050e-1548.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLC6_ECTSI6.630e-1542.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig152contigL-elsbetiae_contig152:12477..13480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1005
Cds size1002
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.1309936-CDS-L-elsbetiae_contig152:12476..134781622815618.1309936-CDS-L-elsbetiae_contig152:12476..13478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 12477..13478 +
1691682994.3819246-CDS-L-elsbetiae_contig152:12476..134781691682994.3819246-CDS-L-elsbetiae_contig152:12476..13478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 12477..13478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig152.3706.1prot_L-elsbetiae_contig152.3706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig152 12477..13478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig152.3706.1

>prot_L-elsbetiae_contig152.3706.1 ID=prot_L-elsbetiae_contig152.3706.1|Name=mRNA_L-elsbetiae_contig152.3706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=334bp
ALSLRPRKDASAPISENPGGLGASSASTGAPGTAAAGAAAARPRRAPPAA
GAAERLSSFGASPPSAAPPAFIIVFSFFFRSSVAFSQSSCSSCSSSASCL
LLAGEGSQRSPPPAWAGAAAAAAATPATAAAPVRRAFSASSSPEPCPSGR
CAGLGIGAATAAAAAAAAAAAVSISTTALGAAALPAPPNPPGTPWRGVEK
SLGSGWDRPGSGTASIGTSCTAASGLPTCPGLPADGGGMAATCPAFSIAA
ARSAAGSRGARRLPPPPLLALLTDDARELLLLPLTSLSVSESVKNSCSAS
SAIGVRSGVITRERDLAIASSRVTPGPGSAAAPS
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mRNA from alignment at L-elsbetiae_contig152:12477..13480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig152.3706.1 ID=mRNA_L-elsbetiae_contig152.3706.1|Name=mRNA_L-elsbetiae_contig152.3706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1004bp|location=Sequence derived from alignment at L-elsbetiae_contig152:12477..13480+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTTGTCGCTCCGTCCGAGGAAAGACGCCAGTGCCCCCATCAGCGAGAA
CCCGGGAGGCTTGGGGGCTTCCTCCGCTTCGACCGGTGCGCCCGGTACCG
CTGCCGCCGGCGCCGCTGCCGCTCGCCCAAGGAGAGCCCCCCCGGCGGCG
GGGGCGGCCGAAAGACTGTCCAGCTTCGGAGCGTCCCCTCCCTCCGCAGC
TCCTCCGGCCTTCATCATCGTCTTCTCCTTCTTCTTCCGCTCCTCCGTGG
CCTTCTCCCAGAGCTCGTGCTCTTCCTGCTCGTCTTCTGCCTCTTGCTTG
CTCCTGGCGGGGGAAGGGTCGCAGCGGAGCCCTCCCCCCGCGTGGGCAGG
AGCTGCAGCAGCAGCAGCAGCAACACCCGCCACCGCCGCCGCGCCCGTTC
GCCGCGCATTCTCCGCATCGTCCTCACCGGAACCTTGCCCGTCGGGACGC
TGTGCCGGCCTCGGGATCGGTGCCGCCACCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCTGCCGTCTCGATCTCCACCACCGCCTTGGGGGCTGCGGCGC
TCCCCGCGCCCCCGAACCCTCCGGGGACCCCGTGGCGGGGGGTCGAGAAG
TCGCTCGGCTCGGGGTGGGATAGACCGGGCAGCGGAACGGCTTCCATCGG
GACCTCTTGCACGGCGGCCAGCGGCCTCCCCACCTGCCCGGGGCTGCCGG
CCGACGGCGGCGGGATGGCCGCCACCTGCCCGGCCTTTTCCATCGCCGCC
GCGAGGAGCGCGGCAGGGTCCCGGGGAGCCCGGCGCCTGCCGCCACCACC
GCTCCTGGCGCTGCTCACGGACGACGCGCGCGAGCTGCTGCTGCTGCCGC
TGACCTCGCTCTCCGTCTCCGAGTCGGTGAAGAACTCGTGCTCGGCGAGC
TCGGCGATCGGCGTCAGGTCCGGGGTGATCACCCGCGAGCGGGACTTGGC
GATCGCCTCCTCGAGGGTCACCCCCGGCCCCGGATCCGCCGCCGCCCCCT
CGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig152:12477..13480+

>mRNA_L-elsbetiae_contig152.3706.1 ID=mRNA_L-elsbetiae_contig152.3706.1|Name=mRNA_L-elsbetiae_contig152.3706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2004bp|location=Sequence derived from alignment at L-elsbetiae_contig152:12477..13480+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTTGTCGCTCCGTCCGAGGAAAGACGCCAGTGCCCCCATCAGCGAGAA
CCCGGGAGGCTTGGGGGCTTCCTCCGCTTCGACCGGTGCGCCCGGTACCG
CTGCCGCCGGCGCCGCTGCCGCTCGCCCAAGGAGAGCCCCCCCGGCGGCG
GGGGCGGCCGAAAGACTGTCCAGCTTCGGAGCGTCCCCTCCCTCCGCAGC
TCCTCCGGCCTTCATCATCGTCTTCTCCTTCTTCTTCCGCTCCTCCGTGG
CCTTCTCCCAGAGCTCGTGCTCTTCCTGCTCGTCTTCTGCCTCTTGCTTG
CTCCTGGCGGGGGAAGGGTCGCAGCGGAGCCCTCCCCCCGCGTGGGCAGG
AGCTGCAGCAGCAGCAGCAGCAACACCCGCCACCGCCGCCGCGCCCGTTC
GCCGCGCATTCTCCGCATCGTCCTCACCGGAACCTTGCCCGTCGGGACGC
TGTGCCGGCCTCGGGATCGGTGCCGCCACCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCTGCCGTCTCGATCTCCACCACCGCCTTGGGGGCTGCGGCGC
TCCCCGCGCCCCCGAACCCTCCGGGGACCCCGTGGCGGGGGGTCGAGAAG
TCGCTCGGCTCGGGGTGGGATAGACCGGGCAGCGGAACGGCTTCCATCGG
GACCTCTTGCACGGCGGCCAGCGGCCTCCCCACCTGCCCGGGGCTGCCGG
CCGACGGCGGCGGGATGGCCGCCACCTGCCCGGCCTTTTCCATCGCCGCC
GCGAGGAGCGCGGCAGGGTCCCGGGGAGCCCGGCGCCTGCCGCCACCACC
GCTCCTGGCGCTGCTCACGGACGACGCGCGCGAGCTGCTGCTGCTGCCGC
TGACCTCGCTCTCCGTCTCCGAGTCGGTGAAGAACTCGTGCTCGGCGAGC
TCGGCGATCGGCGTCAGGTCCGGGGTGATCACCCGCGAGCGGGACTTGGC
GATCGCCTCCTCGAGGGTCACCCCCGGCCCCGGATCCGCCGCCGCCCCCT
CGGCGTTGTCGCTCCGTCCGAGGAAAGACGCCAGTGCCCCCATCAGCGAG
AACCCGGGAGGCTTGGGGGCTTCCTCCGCTTCGACCGGTGCGCCCGGTAC
CGCTGCCGCCGGCGCCGCTGCCGCTCGCCCAAGGAGAGCCCCCCCGGCGG
CGGGGGCGGCCGAAAGACTGTCCAGCTTCGGAGCGTCCCCTCCCTCCGCA
GCTCCTCCGGCCTTCATCATCGTCTTCTCCTTCTTCTTCCGCTCCTCCGT
GGCCTTCTCCCAGAGCTCGTGCTCTTCCTGCTCGTCTTCTGCCTCTTGCT
TGCTCCTGGCGGGGGAAGGGTCGCAGCGGAGCCCTCCCCCCGCGTGGGCA
GGAGCTGCAGCAGCAGCAGCAGCAACACCCGCCACCGCCGCCGCGCCCGT
TCGCCGCGCATTCTCCGCATCGTCCTCACCGGAACCTTGCCCGTCGGGAC
GCTGTGCCGGCCTCGGGATCGGTGCCGCCACCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCTGCCGTCTCGATCTCCACCACCGCCTTGGGGGCTGCGGC
GCTCCCCGCGCCCCCGAACCCTCCGGGGACCCCGTGGCGGGGGGTCGAGA
AGTCGCTCGGCTCGGGGTGGGATAGACCGGGCAGCGGAACGGCTTCCATC
GGGACCTCTTGCACGGCGGCCAGCGGCCTCCCCACCTGCCCGGGGCTGCC
GGCCGACGGCGGCGGGATGGCCGCCACCTGCCCGGCCTTTTCCATCGCCG
CCGCGAGGAGCGCGGCAGGGTCCCGGGGAGCCCGGCGCCTGCCGCCACCA
CCGCTCCTGGCGCTGCTCACGGACGACGCGCGCGAGCTGCTGCTGCTGCC
GCTGACCTCGCTCTCCGTCTCCGAGTCGGTGAAGAACTCGTGCTCGGCGA
GCTCGGCGATCGGCGTCAGGTCCGGGGTGATCACCCGCGAGCGGGACTTG
GCGATCGCCTCCTCGAGGGTCACCCCCGGCCCCGGATCCGCCGCCGCCCC
CTCG
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