mRNA_L-elsbetiae_contig15185.3702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15185.3702.1
Unique NamemRNA_L-elsbetiae_contig15185.3702.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15185.3702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15185contigL-elsbetiae_contig15185:1065..2159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_000350.1
Exons2
Model size469
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.9763885-CDS-L-elsbetiae_contig15185:1065..14241622815617.9763885-CDS-L-elsbetiae_contig15185:1065..1424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15185 1066..1424 -
1691682994.313838-CDS-L-elsbetiae_contig15185:1065..14241691682994.313838-CDS-L-elsbetiae_contig15185:1065..1424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15185 1066..1424 -
1622815617.9936182-CDS-L-elsbetiae_contig15185:2050..21591622815617.9936182-CDS-L-elsbetiae_contig15185:2050..2159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15185 2051..2159 -
1691682994.3242838-CDS-L-elsbetiae_contig15185:2050..21591691682994.3242838-CDS-L-elsbetiae_contig15185:2050..2159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15185 2051..2159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15185.3702.1prot_L-elsbetiae_contig15185.3702.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15185 1066..2159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15185.3702.1

>prot_L-elsbetiae_contig15185.3702.1 ID=prot_L-elsbetiae_contig15185.3702.1|Name=mRNA_L-elsbetiae_contig15185.3702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
RAVGDHAQGVDDYSSVRVMRFKRTTESMGATAADDEATSPAKSEADDRAA
QSGGGGKSGTGEDERNEPGSGPGGSGASASSPGVQVRGSGGGGSAAARAA
GEDSDDVGGGGGRGAGVAAGLADDEGRHVSGGKKEGGGEGRGERRRAATT
TGDREP
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mRNA from alignment at L-elsbetiae_contig15185:1065..2159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15185.3702.1 ID=mRNA_L-elsbetiae_contig15185.3702.1|Name=mRNA_L-elsbetiae_contig15185.3702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1095bp|location=Sequence derived from alignment at L-elsbetiae_contig15185:1065..2159- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAGTGGGCGACCACGCACAGGGGGTTGACGACTACAGTAGCGTCAG
GGTTATGAGGTTCAAGCGAACGACCGAAAGTATGGGCGCGACAGCGGCTG
ATGACGAAGGTGAATGTACAACCATGATTAGTACTCAATTATGGTTACTC
TGTGGGGTCTACTCTACACTCTACTGCTGTTTCGTTTTTTTCTGTATTGT
AGCAGCACTTGCCACGATTGGTGCGTGCTGCTCTTCACAGGATCGCATGA
TTCGGGTAGAGGACGCAAAAATATTACAGATTGATGGGGAAATGAGGAAA
TAATATAATGATAACTTCGCAGGGTGCAAACCAAAATGTTCTGTGTACAA
TATGAAGTTTTTCGATTCTCAATTATTCAACCATTTCCCATTTTTTCAAT
ATTTATTCTTTTTTTACACATAGACTATGTATGGGTGGTATGGGTACCGA
CCTACTGCTGTATTTATTTCATTTATTTTTATTTATTAGTTTGGGTTTGG
GAGAGGGATCATACACTCCCAACCAGAAATAAATGAAGTAATCATACCCC
ATTAAATATATAGACTATTCGTATCAATACCGCAGAGAAACGCAGGCGTT
TTTTCGAATCGGGATATTTCCTCGAACATCCCCGGATGGGATGGCACCGT
CGACATCACCGCAGACCACTTTTGGCATTACCCTCTTACCCCCCCCCTCC
CCCCCCGTGCTGTCACATCAATCGACCCCCGGCAGCGACATCCCCAGCGA
AGTCTGAGGCAGACGACCGTGCCGCCCAAAGCGGCGGCGGCGGCAAGTCA
GGCACCGGTGAGGACGAGAGGAACGAGCCCGGCTCGGGCCCGGGGGGGTC
CGGGGCATCGGCTTCGTCGCCGGGGGTGCAAGTGCGAGGGAGCGGCGGGG
GAGGTTCCGCCGCAGCAAGGGCTGCCGGTGAGGACAGCGACGACGTTGGT
GGTGGTGGTGGTCGTGGTGCCGGGGTTGCTGCAGGACTGGCAGATGACGA
AGGACGGCACGTTTCGGGAGGAAAGAAGGAAGGAGGAGGAGAGGGGAGAG
GGGAAAGGCGGCGGGCAGCGACAACGACAGGAGACAGAGAACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15185:1065..2159-

>mRNA_L-elsbetiae_contig15185.3702.1 ID=mRNA_L-elsbetiae_contig15185.3702.1|Name=mRNA_L-elsbetiae_contig15185.3702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig15185:1065..2159- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAGTGGGCGACCACGCACAGGGGGTTGACGACTACAGTAGCGTCAG
GGTTATGAGGTTCAAGCGAACGACCGAAAGTATGGGCGCGACAGCGGCTG
ATGACGAAGCGGGCAGTGGGCGACCACGCACAGGGGGTTGACGACTACAG
TAGCGTCAGGGTTATGAGGTTCAAGCGAACGACCGAAAGTATGGGCGCGA
CAGCGGCTGATGACGAAGCGACATCCCCAGCGAAGTCTGAGGCAGACGAC
CGTGCCGCCCAAAGCGGCGGCGGCGGCAAGTCAGGCACCGGTGAGGACGA
GAGGAACGAGCCCGGCTCGGGCCCGGGGGGGTCCGGGGCATCGGCTTCGT
CGCCGGGGGTGCAAGTGCGAGGGAGCGGCGGGGGAGGTTCCGCCGCAGCA
AGGGCTGCCGGTGAGGACAGCGACGACGTTGGTGGTGGTGGTGGTCGTGG
TGCCGGGGTTGCTGCAGGACTGGCAGATGACGAAGGACGGCACGTTTCGG
GAGGAAAGAAGGAAGGAGGAGGAGAGGGGAGAGGGGAAAGGCGGCGGGCA
GCGACAACGACAGGAGACAGAGAACCACGACATCCCCAGCGAAGTCTGAG
GCAGACGACCGTGCCGCCCAAAGCGGCGGCGGCGGCAAGTCAGGCACCGG
TGAGGACGAGAGGAACGAGCCCGGCTCGGGCCCGGGGGGGTCCGGGGCAT
CGGCTTCGTCGCCGGGGGTGCAAGTGCGAGGGAGCGGCGGGGGAGGTTCC
GCCGCAGCAAGGGCTGCCGGTGAGGACAGCGACGACGTTGGTGGTGGTGG
TGGTCGTGGTGCCGGGGTTGCTGCAGGACTGGCAGATGACGAAGGACGGC
ACGTTTCGGGAGGAAAGAAGGAAGGAGGAGGAGAGGGGAGAGGGGAAAGG
CGGCGGGCAGCGACAACGACAGGAGACAGAGAACCA
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